Wall clock time and date at job start Tue Mar 31 2020 22:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 110.41238 * 2 1 4 4 S 1.65605 * 120.00065 * 324.68956 * 3 2 1 5 5 O 1.42100 * 106.40052 * 181.13924 * 4 3 2 6 6 O 1.42097 * 106.40123 * 314.06289 * 4 3 2 7 7 C 1.76206 * 107.21524 * 67.60194 * 4 3 2 8 8 C 1.38233 * 119.99776 * 259.50838 * 7 4 3 9 9 C 1.38228 * 119.99996 * 179.76874 * 8 7 4 10 10 C 1.38238 * 120.00140 * 0.50662 * 9 8 7 11 11 C 1.50702 * 120.00490 * 179.72719 * 10 9 8 12 12 C 1.50697 * 109.46856 * 270.02270 * 11 10 9 13 13 H 1.08004 * 120.00075 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00073 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99539 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00346 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46958 * 60.00106 * 16 14 12 18 18 H 1.48495 * 109.47107 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47239 * 300.00225 * 16 14 12 20 20 C 1.38235 * 119.99256 * 359.74523 * 10 9 8 21 21 C 1.38231 * 120.00003 * 79.78424 * 7 4 3 22 22 C 1.54490 * 110.36866 * 122.29936 * 2 1 3 23 23 C 1.54572 * 102.33390 * 134.08111 * 22 2 1 24 24 O 1.46149 * 104.28457 * 333.40346 * 23 22 2 25 25 C 1.34062 * 110.03495 * 30.33018 * 24 23 22 26 26 O 1.20821 * 125.10186 * 159.27830 * 25 24 23 27 27 H 1.08999 * 109.46958 * 305.25961 * 1 2 3 28 28 H 1.08999 * 109.47300 * 65.26305 * 1 2 3 29 29 H 1.09001 * 109.46927 * 185.26872 * 1 2 3 30 30 H 0.96996 * 120.00166 * 144.69597 * 3 2 1 31 31 H 1.08004 * 120.00143 * 359.97438 * 8 7 4 32 32 H 1.08003 * 120.00281 * 180.23579 * 9 8 7 33 33 H 1.08998 * 109.46717 * 30.02103 * 11 10 9 34 34 H 1.08991 * 109.47185 * 150.02161 * 11 10 9 35 35 H 0.97006 * 119.99734 * 180.02562 * 15 14 12 36 36 H 1.08011 * 119.99418 * 179.97438 * 20 10 9 37 37 H 1.07998 * 120.00200 * 0.02562 * 21 7 4 38 38 H 1.09001 * 110.86535 * 252.34851 * 22 2 1 39 39 H 1.08998 * 110.86858 * 15.81072 * 22 2 1 40 40 H 1.08997 * 110.44160 * 91.99535 * 23 22 2 41 41 H 1.09006 * 110.43608 * 214.51350 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0410 1.3730 0.0000 4 16 1.2330 2.5572 -0.8290 5 8 1.9847 3.7509 -0.6580 6 8 0.9190 2.0121 -2.1031 7 6 -0.3034 2.8146 -0.0055 8 6 -1.4604 2.2499 -0.5089 9 6 -2.6650 2.4479 0.1397 10 6 -2.7143 3.2191 1.2859 11 6 -4.0284 3.4399 1.9897 12 6 -4.6947 4.6722 1.4343 13 1 -4.2148 5.2386 0.6498 14 6 -5.9175 5.0761 1.9268 15 7 -6.5022 4.3862 2.8817 16 14 -6.7432 6.6040 1.2388 17 1 -6.9838 6.4243 -0.2155 18 1 -8.0382 6.8216 1.9322 19 1 -5.8635 7.7811 1.4532 20 6 -1.5580 3.7879 1.7863 21 6 -0.3526 3.5857 1.1406 22 6 2.0678 -0.7739 1.2242 23 6 3.1675 -1.6608 0.5972 24 8 2.7429 -1.8348 -0.7904 25 6 2.0567 -0.7581 -1.1992 26 8 1.8851 -0.4401 -2.3521 27 1 -0.3633 0.5933 0.8391 28 1 -0.3634 0.4300 -0.9333 29 1 -0.3633 -1.0233 0.0944 30 1 2.8526 1.5884 0.4854 31 1 -1.4228 1.6514 -1.4071 32 1 -3.5683 2.0036 -0.2514 33 1 -4.6741 2.5759 1.8331 34 1 -3.8513 3.5724 3.0569 35 1 -7.3627 4.6701 3.2280 36 1 -1.5966 4.3908 2.6817 37 1 0.5505 4.0309 1.5312 38 1 2.4924 -0.0905 1.9596 39 1 1.2843 -1.3852 1.6719 40 1 4.1329 -1.1564 0.6384 41 1 3.2175 -2.6228 1.1073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885197151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:27 Heat of formation + Delta-G solvation = -145.656533 kcal Electronic energy + Delta-G solvation = -27809.950683 eV Core-core repulsion = 23781.351782 eV Total energy + Delta-G solvation = -4028.598901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.24160 -40.33764 -38.60453 -38.39496 -37.20568 -36.97580 -35.60525 -33.40982 -32.28603 -31.95731 -30.30466 -29.19293 -26.48112 -25.55119 -23.71169 -23.51742 -22.48469 -21.90114 -20.39853 -19.22416 -18.81543 -18.56719 -18.23504 -17.85832 -17.17673 -16.98322 -16.76204 -16.14664 -15.86993 -15.49025 -15.37158 -15.23113 -14.92704 -14.59893 -14.48778 -14.23209 -13.86697 -13.62021 -13.53833 -13.37751 -13.22894 -13.18664 -13.14084 -13.04922 -12.68193 -12.65379 -12.63960 -12.25966 -12.18540 -12.02754 -11.84871 -11.64841 -11.46965 -11.35151 -10.63913 -10.47670 -9.94434 -9.84459 -8.26395 -6.38567 -0.73452 -0.06928 0.42193 0.91769 1.39315 1.40173 1.48633 1.92116 2.21971 2.34887 2.52362 2.74400 2.89290 3.06606 3.13941 3.31247 3.55735 3.82707 3.87521 3.94317 4.02075 4.17450 4.31304 4.45630 4.50070 4.54255 4.62567 4.72302 4.82355 4.92522 4.96611 5.01302 5.08310 5.14251 5.27626 5.28674 5.35660 5.67981 5.68455 5.89274 5.93063 5.94092 6.11345 6.41621 6.73369 7.30484 8.83254 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.021795 B = 0.002957 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.387971 B = 9466.241031 C = 9889.758402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.130 3.870 3 N -1.083 6.083 4 S 2.709 3.291 5 O -0.983 6.983 6 O -0.968 6.968 7 C -0.696 4.696 8 C -0.015 4.015 9 C -0.153 4.153 10 C 0.003 3.997 11 C 0.048 3.952 12 C -0.535 4.535 13 H 0.053 0.947 14 C 0.012 3.988 15 N -0.924 5.924 16 Si 0.960 3.040 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.269 1.269 20 C -0.153 4.153 21 C -0.010 4.010 22 C -0.148 4.148 23 C 0.045 3.955 24 O -0.363 6.363 25 C 0.461 3.539 26 O -0.465 6.465 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.437 0.563 31 H 0.150 0.850 32 H 0.127 0.873 33 H 0.014 0.986 34 H 0.016 0.984 35 H 0.267 0.733 36 H 0.131 0.869 37 H 0.158 0.842 38 H 0.138 0.862 39 H 0.127 0.873 40 H 0.107 0.893 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.791 -12.979 1.801 24.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.039 3.961 3 N -0.847 5.847 4 S 2.801 3.199 5 O -0.973 6.973 6 O -0.957 6.957 7 C -0.785 4.785 8 C -0.034 4.034 9 C -0.172 4.172 10 C 0.002 3.998 11 C 0.011 3.989 12 C -0.573 4.573 13 H 0.071 0.929 14 C -0.187 4.187 15 N -0.563 5.563 16 Si 0.785 3.215 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.194 1.194 20 C -0.171 4.171 21 C -0.029 4.029 22 C -0.186 4.186 23 C -0.028 4.028 24 O -0.279 6.279 25 C 0.298 3.702 26 O -0.347 6.347 27 H 0.121 0.879 28 H 0.088 0.912 29 H 0.130 0.870 30 H 0.276 0.724 31 H 0.167 0.833 32 H 0.145 0.855 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.149 0.851 37 H 0.176 0.824 38 H 0.156 0.844 39 H 0.145 0.855 40 H 0.125 0.875 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 20.775 -12.640 0.394 24.322 hybrid contribution -1.254 0.944 0.390 1.617 sum 19.521 -11.696 0.783 22.771 Atomic orbital electron populations 1.23055 0.90590 1.07536 1.05019 1.21456 0.96766 0.82420 0.95488 1.55312 1.40171 1.18013 1.71237 1.01285 0.73263 0.72098 0.73281 1.93554 1.71022 1.46022 1.86740 1.93639 1.84820 1.78739 1.38529 1.30567 1.19735 1.15489 1.12669 1.21027 0.90924 0.94087 0.97402 1.21229 0.98307 1.01327 0.96309 1.20787 0.95968 0.89710 0.93310 1.18258 0.89308 0.96307 0.94982 1.21284 1.04480 1.10725 1.20810 0.92882 1.25812 0.97701 1.00099 0.95137 1.70039 1.17314 1.40921 1.28068 0.85571 0.77772 0.79498 0.78678 1.19575 1.20439 1.19381 1.21280 0.92084 1.01716 1.02064 1.20964 0.98795 0.91971 0.91211 1.23468 1.00369 0.99584 0.95181 1.24721 0.98441 1.04490 0.75173 1.87084 1.67061 1.39767 1.34024 1.23989 0.76038 0.79526 0.90680 1.90824 1.55656 1.65762 1.22474 0.87926 0.91224 0.87022 0.72357 0.83297 0.85478 0.96807 0.96584 0.92398 0.85064 0.82443 0.84415 0.85505 0.87509 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.58 6.28 71.98 0.45 -3.12 16 2 C 0.13 1.99 1.04 3.57 0.00 2.00 16 3 N -1.08 -17.46 5.52 -152.37 -0.84 -18.30 16 4 S 2.71 70.85 5.31 -56.49 -0.30 70.55 16 5 O -0.98 -29.80 17.58 -128.00 -2.25 -32.05 16 6 O -0.97 -32.33 13.88 -120.36 -1.67 -34.00 16 7 C -0.70 -19.33 4.20 22.27 0.09 -19.23 16 8 C -0.02 -0.46 6.70 22.27 0.15 -0.31 16 9 C -0.15 -5.37 9.70 22.27 0.22 -5.15 16 10 C 0.00 0.10 5.07 -19.86 -0.10 0.00 16 11 C 0.05 2.38 5.10 29.10 0.15 2.52 16 12 C -0.54 -29.14 9.09 25.60 0.23 -28.91 16 13 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 14 C 0.01 0.64 5.46 84.65 0.46 1.10 16 15 N -0.92 -53.17 13.29 21.45 0.28 -52.89 16 16 Si 0.96 43.09 29.54 68.60 2.03 45.11 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 18 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 C -0.15 -5.17 9.70 22.27 0.22 -4.96 16 21 C -0.01 -0.29 9.53 22.27 0.21 -0.07 16 22 C -0.15 -0.64 6.45 31.64 0.20 -0.44 16 23 C 0.04 0.21 7.93 72.52 0.58 0.78 16 24 O -0.36 -6.32 11.06 -50.14 -0.55 -6.88 16 25 C 0.46 10.58 7.48 71.44 0.53 11.11 16 26 O -0.47 -15.60 16.17 27.97 0.45 -15.15 16 27 H 0.10 1.72 6.30 -2.39 -0.02 1.70 16 28 H 0.07 1.59 3.82 -2.39 -0.01 1.58 16 29 H 0.11 1.44 8.07 -2.39 -0.02 1.42 16 30 H 0.44 3.77 8.60 -96.75 -0.83 2.94 16 31 H 0.15 4.08 6.00 -2.91 -0.02 4.07 16 32 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 33 H 0.01 0.71 8.09 -2.39 -0.02 0.69 16 34 H 0.02 0.82 8.08 -2.39 -0.02 0.80 16 35 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 36 H 0.13 4.28 8.06 -2.90 -0.02 4.26 16 37 H 0.16 3.37 7.87 -2.91 -0.02 3.34 16 38 H 0.14 -0.13 7.86 -2.39 -0.02 -0.14 16 39 H 0.13 0.17 7.76 -2.39 -0.02 0.15 16 40 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 41 H 0.15 -0.16 8.14 -2.38 -0.02 -0.18 16 Total: -1.00 -81.03 348.29 0.80 -80.24 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.25 Total: 8.05 kcal Atomic # 6 Polarization: -48.08 SS G_CDS: 3.40 Total: -44.69 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -0.56 Total: -71.19 kcal Atomic # 8 Polarization: -84.05 SS G_CDS: -4.02 Total: -88.07 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 70.85 SS G_CDS: -0.30 Total: 70.55 kcal Total: -81.03 0.80 -80.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885197151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.419 kcal (2) G-P(sol) polarization free energy of solvation -81.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds