Wall clock time and date at job start Tue Mar 31 2020 21:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00095 * 2 1 4 4 H 1.48497 * 109.47218 * 269.99702 * 3 2 1 5 5 H 1.48504 * 109.47105 * 30.00088 * 3 2 1 6 6 H 1.48505 * 109.47012 * 149.99860 * 3 2 1 7 7 C 1.37881 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.46697 * 179.97438 * 9 7 2 11 11 C 1.38238 * 119.99868 * 90.00584 * 10 9 7 12 12 C 1.38227 * 120.00164 * 179.97438 * 11 10 9 13 13 C 1.38237 * 120.00041 * 359.97438 * 12 11 10 14 14 S 1.76201 * 120.00154 * 179.97438 * 13 12 11 15 15 O 1.42101 * 106.40204 * 336.46103 * 14 13 12 16 16 O 1.42094 * 106.40482 * 203.53703 * 14 13 12 17 17 N 1.65608 * 107.21619 * 89.99834 * 14 13 12 18 18 C 1.47426 * 125.64560 * 90.02431 * 17 14 13 19 19 C 1.54910 * 104.83073 * 204.09186 * 18 17 14 20 20 C 1.55150 * 101.58106 * 322.99371 * 19 18 17 21 21 H 1.09007 * 110.71884 * 277.13577 * 20 19 18 22 22 C 1.50709 * 110.72123 * 154.04364 * 20 19 18 23 23 O 1.20815 * 119.99802 * 241.45123 * 22 20 19 24 24 O 1.34228 * 119.99506 * 61.45183 * 22 20 19 25 25 C 1.47019 * 125.64893 * 269.71748 * 17 14 13 26 26 C 1.38233 * 119.99727 * 0.27405 * 13 12 11 27 27 C 1.38234 * 120.00175 * 269.97329 * 10 9 7 28 28 H 0.96997 * 119.99557 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46901 * 59.99759 * 9 7 2 30 30 H 1.08996 * 109.47181 * 299.99705 * 9 7 2 31 31 H 1.08001 * 119.99622 * 359.96828 * 11 10 9 32 32 H 1.08006 * 120.00112 * 179.97438 * 12 11 10 33 33 H 1.09002 * 110.36613 * 322.93094 * 18 17 14 34 34 H 1.09001 * 110.36638 * 85.14291 * 18 17 14 35 35 H 1.08997 * 111.00440 * 81.06524 * 19 18 17 36 36 H 1.08998 * 111.00448 * 204.91694 * 19 18 17 37 37 H 0.96706 * 116.99215 * 180.02562 * 24 22 20 38 38 H 1.08995 * 109.88426 * 298.39785 * 25 17 14 39 39 H 1.09007 * 109.88165 * 59.55797 * 25 17 14 40 40 H 1.08005 * 119.99968 * 179.72916 * 26 13 12 41 41 H 1.07994 * 120.00032 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6793 -4.1700 1.1977 12 6 3.5772 -5.2210 1.1978 13 6 4.0257 -5.7470 0.0007 14 16 5.1707 -7.0862 0.0007 15 8 5.8460 -7.0367 1.2501 16 8 5.8445 -7.0382 -1.2494 17 7 4.2870 -8.4868 0.0020 18 6 3.8282 -9.2143 -1.1953 19 6 2.5952 -10.0226 -0.7199 20 6 3.0266 -10.4354 0.7121 21 1 3.6570 -11.3242 0.6838 22 6 1.8209 -10.6669 1.5863 23 8 1.6501 -9.9888 2.5715 24 8 0.9371 -11.6264 1.2702 25 6 3.8354 -9.2139 1.1974 26 6 3.5806 -5.2182 -1.1965 27 6 2.6790 -4.1704 -1.1966 28 1 -0.4849 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5568 0.8903 31 1 2.3287 -3.7593 2.1330 32 1 3.9284 -5.6312 2.1332 33 1 3.5427 -8.5128 -1.9792 34 1 4.6087 -9.8854 -1.5537 35 1 1.7036 -9.3961 -0.6940 36 1 2.4367 -10.8991 -1.3482 37 1 0.1795 -11.7371 1.8610 38 1 4.6968 -9.5440 1.7779 39 1 3.2008 -8.5693 1.8057 40 1 3.9343 -5.6263 -2.1318 41 1 2.3281 -3.7600 -2.1319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887328426.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:46 Heat of formation + Delta-G solvation = -143.429376 kcal Electronic energy + Delta-G solvation = -26948.434853 eV Core-core repulsion = 22919.932528 eV Total energy + Delta-G solvation = -4028.502325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89956 -38.80336 -38.43939 -37.21165 -36.48988 -35.82006 -33.68163 -31.80517 -31.55737 -30.58317 -29.62155 -27.43399 -24.71079 -23.72750 -22.63840 -22.32731 -20.91766 -20.78200 -19.19806 -18.52183 -18.07103 -17.66664 -17.06686 -16.44769 -16.05004 -15.82695 -15.29790 -15.05860 -14.59379 -14.37562 -14.14488 -14.05660 -13.81990 -13.58202 -13.14740 -13.07603 -12.83814 -12.43883 -12.24365 -12.12595 -12.00859 -11.95149 -11.86517 -11.75013 -11.71231 -11.49048 -11.37668 -10.98087 -10.91542 -10.85751 -10.53999 -10.48592 -9.76566 -9.67242 -9.27210 -8.59389 -8.54017 -8.38631 -6.17349 -4.22375 0.35402 1.32239 1.78397 1.79421 2.50916 2.97335 3.24313 3.30819 3.35381 3.71527 3.82170 3.95845 4.13113 4.36997 4.37558 4.50378 4.80447 4.86378 4.94980 5.15349 5.15810 5.21242 5.23610 5.34243 5.40219 5.45126 5.61091 5.72048 5.73358 5.78481 5.90936 6.06778 6.13062 6.24579 6.32605 6.51707 6.83476 6.90441 7.28919 7.42829 7.47106 7.58629 7.77760 8.12943 8.82376 9.42592 10.92721 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015410 B = 0.002904 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.620539 B = 9640.709148 C =10587.060659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.039 3.961 10 C 0.027 3.973 11 C -0.145 4.145 12 C -0.021 4.021 13 C -0.705 4.705 14 S 2.712 3.288 15 O -0.957 6.957 16 O -0.957 6.957 17 N -1.015 6.015 18 C 0.120 3.880 19 C -0.118 4.118 20 C -0.093 4.093 21 H 0.126 0.874 22 C 0.489 3.511 23 O -0.506 6.506 24 O -0.514 6.514 25 C 0.130 3.870 26 C -0.024 4.024 27 C -0.146 4.146 28 H 0.264 0.736 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.413 0.587 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.129 0.871 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.633 -25.040 -1.059 25.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.002 3.998 10 C 0.027 3.973 11 C -0.164 4.164 12 C -0.041 4.041 13 C -0.795 4.795 14 S 2.807 3.193 15 O -0.948 6.948 16 O -0.947 6.947 17 N -0.852 5.852 18 C -0.005 4.005 19 C -0.157 4.157 20 C -0.114 4.114 21 H 0.144 0.856 22 C 0.330 3.670 23 O -0.393 6.393 24 O -0.326 6.326 25 C 0.004 3.996 26 C -0.043 4.043 27 C -0.165 4.165 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.272 0.728 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.147 0.853 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.747 -24.561 -1.038 25.037 hybrid contribution -0.865 1.304 0.457 1.631 sum 3.882 -23.257 -0.581 23.586 Atomic orbital electron populations 1.69948 1.06075 1.27127 1.49828 1.25006 0.94935 0.99404 0.94802 0.86472 0.79840 0.82746 0.78313 1.20443 1.21021 1.19679 1.20972 0.93109 0.89459 1.52029 0.92274 1.18541 0.92646 0.89527 0.99039 1.21127 0.92153 0.91983 0.92056 1.21253 0.99032 0.97162 0.98934 1.20784 0.93092 0.94480 0.95743 1.30363 1.25480 1.23703 0.99969 1.01232 0.73112 0.71639 0.73290 1.93559 1.70794 1.86282 1.44129 1.93559 1.70717 1.86338 1.44126 1.58779 1.73613 1.40177 1.12669 1.22037 0.95557 0.95601 0.87274 1.22824 0.98779 1.01114 0.92939 1.22012 0.92726 1.01180 0.95462 0.85614 1.23026 0.83506 0.76489 0.83982 1.90777 1.74997 1.46036 1.27465 1.84503 1.36967 1.53879 1.57251 1.21615 0.98671 0.92265 0.87018 1.20757 0.93265 0.94664 0.95627 1.21239 0.99097 0.97263 0.98876 0.92626 0.94720 0.94695 0.85305 0.85263 0.89673 0.90357 0.89664 0.88341 0.72780 0.89687 0.89344 0.85306 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.14 9.09 -34.44 -0.31 -14.46 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.04 0.97 5.10 -29.03 -0.15 0.82 16 10 C 0.03 0.57 5.07 -104.62 -0.53 0.04 16 11 C -0.14 -2.77 9.70 -39.59 -0.38 -3.15 16 12 C -0.02 -0.36 9.52 -39.59 -0.38 -0.74 16 13 C -0.71 -11.34 5.97 -39.58 -0.24 -11.58 16 14 S 2.71 38.32 5.94 -107.50 -0.64 37.68 16 15 O -0.96 -15.68 16.86 -57.17 -0.96 -16.65 16 16 O -0.96 -15.13 16.86 -57.17 -0.96 -16.10 16 17 N -1.01 -10.59 3.70 -111.41 -0.41 -11.00 16 18 C 0.12 0.90 6.98 -2.53 -0.02 0.88 16 19 C -0.12 -0.68 6.51 -24.59 -0.16 -0.84 16 20 C -0.09 -0.62 3.43 -89.93 -0.31 -0.93 16 21 H 0.13 0.51 8.14 -51.92 -0.42 0.09 16 22 C 0.49 3.95 7.64 36.01 0.28 4.22 16 23 O -0.51 -5.98 16.24 -18.74 -0.30 -6.29 16 24 O -0.51 -2.85 13.41 -39.25 -0.53 -3.37 16 25 C 0.13 1.22 6.40 -3.06 -0.02 1.20 16 26 C -0.02 -0.39 9.52 -39.58 -0.38 -0.76 16 27 C -0.15 -2.72 9.70 -39.58 -0.38 -3.10 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.03 0.89 8.08 -51.93 -0.42 0.47 16 30 H 0.03 0.90 8.09 -51.93 -0.42 0.48 16 31 H 0.13 2.35 8.06 -52.49 -0.42 1.93 16 32 H 0.13 1.93 7.62 -52.48 -0.40 1.53 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.57 8.04 -51.93 -0.42 0.15 16 36 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.41 0.81 9.10 45.56 0.41 1.22 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.96 6.89 -51.93 -0.36 0.60 16 40 H 0.13 1.77 7.61 -52.48 -0.40 1.37 16 41 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 365.57 15.07 5.51 5.51 Total: -1.00 -35.71 365.57 -10.16 -45.87 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -4.50 Total: -0.13 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: -3.08 Total: -26.82 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.32 Total: -35.91 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -2.76 Total: -42.41 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 38.32 SS G_CDS: -0.64 Total: 37.68 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.71 -10.16 -45.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887328426.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.561 kcal (2) G-P(sol) polarization free energy of solvation -35.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds