Wall clock time and date at job start Tue Mar 31 2020 21:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00095 * 2 1 4 4 H 1.48497 * 109.47218 * 269.99702 * 3 2 1 5 5 H 1.48504 * 109.47105 * 30.00088 * 3 2 1 6 6 H 1.48505 * 109.47012 * 149.99860 * 3 2 1 7 7 C 1.37881 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.46697 * 179.97438 * 9 7 2 11 11 C 1.38238 * 119.99868 * 90.00584 * 10 9 7 12 12 C 1.38227 * 120.00164 * 179.97438 * 11 10 9 13 13 C 1.38237 * 120.00041 * 359.97438 * 12 11 10 14 14 S 1.76201 * 120.00154 * 179.97438 * 13 12 11 15 15 O 1.42101 * 106.40204 * 336.46103 * 14 13 12 16 16 O 1.42094 * 106.40482 * 203.53703 * 14 13 12 17 17 N 1.65608 * 107.21619 * 89.99834 * 14 13 12 18 18 C 1.47426 * 125.64560 * 90.02431 * 17 14 13 19 19 C 1.54910 * 104.83073 * 204.09186 * 18 17 14 20 20 C 1.55150 * 101.58106 * 322.99371 * 19 18 17 21 21 H 1.09007 * 110.71884 * 277.13577 * 20 19 18 22 22 C 1.50709 * 110.72123 * 154.04364 * 20 19 18 23 23 O 1.20815 * 119.99802 * 241.45123 * 22 20 19 24 24 O 1.34228 * 119.99506 * 61.45183 * 22 20 19 25 25 C 1.47019 * 125.64893 * 269.71748 * 17 14 13 26 26 C 1.38233 * 119.99727 * 0.27405 * 13 12 11 27 27 C 1.38234 * 120.00175 * 269.97329 * 10 9 7 28 28 H 0.96997 * 119.99557 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46901 * 59.99759 * 9 7 2 30 30 H 1.08996 * 109.47181 * 299.99705 * 9 7 2 31 31 H 1.08001 * 119.99622 * 359.96828 * 11 10 9 32 32 H 1.08006 * 120.00112 * 179.97438 * 12 11 10 33 33 H 1.09002 * 110.36613 * 322.93094 * 18 17 14 34 34 H 1.09001 * 110.36638 * 85.14291 * 18 17 14 35 35 H 1.08997 * 111.00440 * 81.06524 * 19 18 17 36 36 H 1.08998 * 111.00448 * 204.91694 * 19 18 17 37 37 H 0.96706 * 116.99215 * 180.02562 * 24 22 20 38 38 H 1.08995 * 109.88426 * 298.39785 * 25 17 14 39 39 H 1.09007 * 109.88165 * 59.55797 * 25 17 14 40 40 H 1.08005 * 119.99968 * 179.72916 * 26 13 12 41 41 H 1.07994 * 120.00032 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6793 -4.1700 1.1977 12 6 3.5772 -5.2210 1.1978 13 6 4.0257 -5.7470 0.0007 14 16 5.1707 -7.0862 0.0007 15 8 5.8460 -7.0367 1.2501 16 8 5.8445 -7.0382 -1.2494 17 7 4.2870 -8.4868 0.0020 18 6 3.8282 -9.2143 -1.1953 19 6 2.5952 -10.0226 -0.7199 20 6 3.0266 -10.4354 0.7121 21 1 3.6570 -11.3242 0.6838 22 6 1.8209 -10.6669 1.5863 23 8 1.6501 -9.9888 2.5715 24 8 0.9371 -11.6264 1.2702 25 6 3.8354 -9.2139 1.1974 26 6 3.5806 -5.2182 -1.1965 27 6 2.6790 -4.1704 -1.1966 28 1 -0.4849 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5568 0.8903 31 1 2.3287 -3.7593 2.1330 32 1 3.9284 -5.6312 2.1332 33 1 3.5427 -8.5128 -1.9792 34 1 4.6087 -9.8854 -1.5537 35 1 1.7036 -9.3961 -0.6940 36 1 2.4367 -10.8991 -1.3482 37 1 0.1795 -11.7371 1.8610 38 1 4.6968 -9.5440 1.7779 39 1 3.2008 -8.5693 1.8057 40 1 3.9343 -5.6263 -2.1318 41 1 2.3281 -3.7600 -2.1319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887328426.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:45 Heat of formation + Delta-G solvation = -168.813116 kcal Electronic energy + Delta-G solvation = -26949.535575 eV Core-core repulsion = 22919.932528 eV Total energy + Delta-G solvation = -4029.603046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.51031 -40.26735 -39.07658 -38.42010 -37.08067 -37.03589 -35.62246 -33.35035 -32.47897 -32.00315 -30.21429 -29.27417 -25.64860 -25.35646 -23.78309 -23.23304 -22.43185 -21.42760 -20.18994 -19.21211 -19.09773 -18.64217 -18.52702 -17.85077 -17.08054 -16.87564 -16.57706 -16.13742 -16.01695 -15.78764 -15.30226 -14.90652 -14.68180 -14.63464 -14.50592 -14.19584 -13.95499 -13.80256 -13.44494 -13.42492 -13.32775 -13.23104 -13.04339 -12.70480 -12.68514 -12.65010 -12.55737 -12.35976 -12.17985 -12.08003 -11.86076 -11.70146 -11.50796 -11.46301 -10.67294 -10.14027 -10.00410 -9.93799 -8.29030 -6.42081 -0.76876 -0.09975 0.35782 1.19199 1.37156 1.37588 1.49221 1.81330 2.14297 2.33361 2.53647 2.75833 3.03537 3.06624 3.30525 3.57047 3.83284 3.92908 4.04851 4.12391 4.27060 4.30047 4.39533 4.43599 4.48264 4.57296 4.77689 4.78953 4.83993 4.87148 4.95467 5.02893 5.06740 5.17730 5.20793 5.23023 5.29679 5.35721 5.63576 5.64809 5.82392 5.88895 6.07199 6.69482 6.98764 7.27093 8.81180 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015410 B = 0.002904 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.620539 B = 9640.709148 C =10587.060659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.003 4.003 11 C -0.157 4.157 12 C -0.022 4.022 13 C -0.705 4.705 14 S 2.738 3.262 15 O -0.979 6.979 16 O -0.969 6.969 17 N -1.009 6.009 18 C 0.106 3.894 19 C -0.110 4.110 20 C -0.087 4.087 21 H 0.161 0.839 22 C 0.494 3.506 23 O -0.552 6.552 24 O -0.505 6.505 25 C 0.119 3.881 26 C -0.017 4.017 27 C -0.154 4.154 28 H 0.268 0.732 29 H 0.015 0.985 30 H 0.011 0.989 31 H 0.127 0.873 32 H 0.149 0.851 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.131 0.869 37 H 0.429 0.571 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.161 0.839 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.095 -27.351 -2.155 27.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.573 4.573 8 H 0.072 0.928 9 C 0.012 3.988 10 C -0.003 4.003 11 C -0.176 4.176 12 C -0.041 4.041 13 C -0.791 4.791 14 S 2.830 3.170 15 O -0.970 6.970 16 O -0.959 6.959 17 N -0.849 5.849 18 C -0.017 4.017 19 C -0.148 4.148 20 C -0.107 4.107 21 H 0.179 0.821 22 C 0.337 3.663 23 O -0.443 6.443 24 O -0.318 6.318 25 C -0.006 4.006 26 C -0.036 4.036 27 C -0.172 4.172 28 H 0.077 0.923 29 H 0.033 0.967 30 H 0.029 0.971 31 H 0.145 0.855 32 H 0.166 0.834 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.150 0.850 37 H 0.290 0.710 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.178 0.822 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.179 -26.868 -2.152 27.654 hybrid contribution -1.340 1.817 0.793 2.393 sum 4.839 -25.051 -1.359 25.551 Atomic orbital electron populations 1.70056 1.07554 1.28192 1.50645 1.25879 0.95787 1.03010 0.94275 0.85438 0.78520 0.78375 0.78699 1.19477 1.20279 1.19306 1.21286 0.93059 0.91003 1.51932 0.92811 1.18263 0.92958 0.90758 0.96854 1.20834 0.93272 0.92333 0.93907 1.21290 0.99906 0.98092 0.98300 1.20987 0.92341 0.93612 0.97201 1.30925 1.24539 1.24186 0.99467 1.00440 0.72620 0.71537 0.72367 1.93529 1.71548 1.86758 1.45163 1.93540 1.71120 1.86718 1.44561 1.58468 1.73318 1.38672 1.14476 1.22452 0.97042 0.96046 0.86174 1.22850 0.97422 1.01883 0.92681 1.22079 0.92272 1.01159 0.95235 0.82128 1.23307 0.83833 0.75913 0.83263 1.90773 1.76128 1.47820 1.29587 1.84465 1.37252 1.52657 1.57429 1.21769 0.99222 0.93044 0.86561 1.21059 0.92001 0.93425 0.97118 1.21330 0.99725 0.98016 0.98160 0.92333 0.96656 0.97063 0.85548 0.83354 0.89293 0.87869 0.90877 0.85049 0.70962 0.88808 0.91430 0.82165 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.71 13.29 21.45 0.28 -54.43 16 2 C 0.01 0.54 5.46 84.66 0.46 1.00 16 3 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.54 -30.25 9.09 25.60 0.23 -30.01 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.05 2.54 5.10 29.10 0.15 2.69 16 10 C 0.00 -0.14 5.07 -19.86 -0.10 -0.24 16 11 C -0.16 -6.21 9.70 22.27 0.22 -6.00 16 12 C -0.02 -0.75 9.52 22.27 0.21 -0.54 16 13 C -0.70 -21.88 5.97 22.27 0.13 -21.74 16 14 S 2.74 72.14 5.94 -56.49 -0.34 71.80 16 15 O -0.98 -30.70 16.86 -128.00 -2.16 -32.85 16 16 O -0.97 -28.18 16.86 -128.00 -2.16 -30.34 16 17 N -1.01 -18.60 3.70 -506.41 -1.87 -20.48 16 18 C 0.11 1.22 6.98 86.86 0.61 1.82 16 19 C -0.11 -0.88 6.51 31.98 0.21 -0.67 16 20 C -0.09 -0.88 3.43 -10.35 -0.04 -0.92 16 21 H 0.16 0.55 8.14 -2.38 -0.02 0.53 16 22 C 0.49 7.05 7.64 71.24 0.54 7.59 16 23 O -0.55 -12.87 16.24 22.00 0.36 -12.51 16 24 O -0.50 -4.29 13.41 -51.40 -0.69 -4.98 16 25 C 0.12 2.01 6.40 86.73 0.56 2.56 16 26 C -0.02 -0.53 9.52 22.27 0.21 -0.32 16 27 C -0.15 -5.78 9.70 22.27 0.22 -5.57 16 28 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 29 H 0.02 0.83 8.08 -2.39 -0.02 0.81 16 30 H 0.01 0.62 8.09 -2.39 -0.02 0.60 16 31 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 32 H 0.15 4.37 7.62 -2.91 -0.02 4.34 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 0.80 8.04 -2.39 -0.02 0.78 16 36 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.43 0.80 9.10 -74.05 -0.67 0.12 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.44 6.89 -2.38 -0.02 1.43 16 40 H 0.16 3.98 7.61 -2.91 -0.02 3.95 16 41 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -78.98 365.57 -0.54 -79.52 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.39 Total: 8.56 kcal Atomic # 6 Polarization: -53.95 SS G_CDS: 3.61 Total: -50.34 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -1.59 Total: -74.90 kcal Atomic # 8 Polarization: -76.04 SS G_CDS: -4.65 Total: -80.69 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 72.14 SS G_CDS: -0.34 Total: 71.80 kcal Total: -78.98 -0.54 -79.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887328426.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.291 kcal (2) G-P(sol) polarization free energy of solvation -78.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds