Wall clock time and date at job start Tue Mar 31 2020 22:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86806 * 120.00060 * 2 1 4 4 H 1.48494 * 109.47360 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47049 * 300.00293 * 3 2 1 6 6 H 1.48504 * 109.46741 * 60.00121 * 3 2 1 7 7 C 1.38661 * 120.00489 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00196 * 179.97438 * 7 2 1 9 9 O 1.34826 * 119.99413 * 0.02562 * 7 2 1 10 10 C 1.35754 * 116.99650 * 185.05921 * 9 7 2 11 11 C 1.38896 * 120.07028 * 354.48256 * 10 9 7 12 12 C 1.38080 * 119.93608 * 179.97438 * 11 10 9 13 13 C 1.38329 * 120.06465 * 359.97438 * 12 11 10 14 14 C 1.38280 * 120.13652 * 0.03847 * 13 12 11 15 15 C 1.50703 * 119.96192 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47201 * 269.98278 * 15 14 13 17 17 O 1.21533 * 120.00101 * 0.02562 * 16 15 14 18 18 N 1.32425 * 119.99618 * 179.97438 * 16 15 14 19 19 S 1.49355 * 119.99724 * 179.97438 * 18 16 15 20 20 O 1.42102 * 107.63352 * 57.55640 * 19 18 16 21 21 C 1.82324 * 107.95795 * 294.16026 * 19 18 16 22 22 C 1.53815 * 107.51869 * 291.91956 * 21 19 18 23 23 O 1.42524 * 109.57362 * 302.09422 * 22 21 19 24 24 C 1.42534 * 116.07218 * 75.06428 * 23 22 21 25 25 C 1.53623 * 109.53404 * 284.94065 * 24 23 22 26 26 C 1.38115 * 120.07344 * 359.96601 * 14 13 12 27 27 H 0.96992 * 119.99980 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.03576 * 359.95560 * 11 10 9 29 29 H 1.07992 * 119.96738 * 179.97438 * 12 11 10 30 30 H 1.07994 * 119.92852 * 180.02562 * 13 12 11 31 31 H 1.09002 * 109.47340 * 29.98207 * 15 14 13 32 32 H 1.08999 * 109.47064 * 149.98368 * 15 14 13 33 33 H 1.08996 * 109.83013 * 51.50769 * 21 19 18 34 34 H 1.09003 * 109.82697 * 172.45810 * 21 19 18 35 35 H 1.09000 * 109.44101 * 182.06197 * 22 21 19 36 36 H 1.09004 * 109.43186 * 62.11833 * 22 21 19 37 37 H 1.09004 * 109.45904 * 164.91672 * 24 23 22 38 38 H 1.08997 * 109.44720 * 44.95625 * 24 23 22 39 39 H 1.09004 * 109.83180 * 298.41488 * 25 24 23 40 40 H 1.08998 * 109.88825 * 177.50114 * 25 24 23 41 41 H 1.08000 * 120.03642 * 180.29367 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7095 1.3465 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0016 10 6 2.0701 -3.5046 0.1046 11 6 3.4575 -3.4394 0.0926 12 6 4.2026 -4.5968 0.2014 13 6 3.5688 -5.8203 0.3227 14 6 2.1877 -5.8885 0.3346 15 6 1.5012 -7.2236 0.4663 16 6 1.2665 -7.8052 -0.9040 17 8 1.6228 -7.1945 -1.8925 18 7 0.6729 -8.9821 -1.0309 19 16 0.4397 -9.5582 -2.3890 20 8 1.7008 -9.6587 -3.0363 21 6 -0.7537 -8.4872 -3.2567 22 6 -2.1097 -8.6340 -2.5458 23 8 -2.5093 -10.0021 -2.5573 24 6 -1.8255 -10.8620 -1.6492 25 6 -0.4150 -11.1553 -2.1828 26 6 1.4368 -4.7344 0.2261 27 1 -0.4850 0.8400 -0.0004 28 1 3.9530 -2.4844 -0.0019 29 1 5.2814 -4.5467 0.1917 30 1 4.1537 -6.7241 0.4080 31 1 2.1301 -7.9000 1.0453 32 1 0.5456 -7.0923 0.9738 33 1 -0.4209 -7.4503 -3.2114 34 1 -0.8453 -8.8021 -4.2962 35 1 -2.8575 -8.0330 -3.0631 36 1 -2.0179 -8.2912 -1.5151 37 1 -2.3774 -11.7966 -1.5487 38 1 -1.7520 -10.3772 -0.6758 39 1 -0.4819 -11.6658 -3.1436 40 1 0.1288 -11.7767 -1.4713 41 1 0.3582 -4.7879 0.2403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891365782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:50 Heat of formation + Delta-G solvation = -63.993465 kcal Electronic energy + Delta-G solvation = -26919.767391 eV Core-core repulsion = 22894.709666 eV Total energy + Delta-G solvation = -4025.057725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -39.79101 -39.44519 -38.69121 -36.66010 -36.35777 -33.34551 -32.83974 -32.28903 -31.82612 -31.30372 -29.08764 -27.09761 -25.20099 -25.15839 -23.37734 -22.22627 -21.43871 -20.28989 -18.40928 -17.56281 -17.42304 -17.27858 -16.96887 -16.86916 -16.32424 -16.03882 -15.49861 -14.98113 -14.78251 -14.46430 -14.39754 -14.22912 -13.94887 -13.87863 -13.40322 -13.33538 -13.27207 -12.63096 -12.52300 -12.42280 -12.21517 -11.73680 -11.54798 -11.36668 -11.22536 -11.12326 -10.79541 -10.76570 -10.62982 -10.48868 -10.36434 -10.11278 -9.76684 -9.73672 -9.22899 -8.75409 -7.92654 -7.09594 -6.36220 -3.94661 -1.09001 1.83726 2.23079 2.50741 2.61774 2.79916 2.89114 3.18041 3.19227 3.24803 3.39815 3.63425 3.97284 4.04082 4.15158 4.28456 4.37612 4.64555 4.69883 4.82361 4.88756 5.11735 5.13723 5.21705 5.24710 5.36525 5.46966 5.71283 5.89135 5.97425 6.08663 6.28631 6.30183 6.45844 6.49807 6.81443 7.05195 7.18706 7.41748 7.50106 7.54930 7.95555 8.09838 8.16616 9.10225 9.82465 10.82487 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018479 B = 0.002674 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.873138 B =10469.013287 C =11375.699705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.037 3.963 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.388 4.388 8 H 0.091 0.909 9 O -0.182 6.182 10 C 0.154 3.846 11 C -0.231 4.231 12 C -0.075 4.075 13 C -0.194 4.194 14 C -0.036 4.036 15 C -0.063 4.063 16 C 0.548 3.452 17 O -0.553 6.553 18 N -1.119 6.119 19 S 2.273 3.727 20 O -0.919 6.919 21 C -0.610 4.610 22 C 0.069 3.931 23 O -0.377 6.377 24 C 0.062 3.938 25 C -0.521 4.521 26 C -0.176 4.176 27 H 0.268 0.732 28 H 0.126 0.874 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.160 0.840 34 H 0.137 0.863 35 H 0.125 0.875 36 H 0.083 0.917 37 H 0.128 0.872 38 H 0.092 0.908 39 H 0.150 0.850 40 H 0.162 0.838 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 -24.444 -2.679 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.465 4.465 8 H 0.109 0.891 9 O -0.086 6.086 10 C 0.101 3.899 11 C -0.250 4.250 12 C -0.094 4.094 13 C -0.213 4.213 14 C -0.037 4.037 15 C -0.106 4.106 16 C 0.335 3.665 17 O -0.430 6.430 18 N -1.031 6.031 19 S 2.470 3.530 20 O -0.904 6.904 21 C -0.744 4.744 22 C -0.009 4.009 23 O -0.295 6.295 24 C -0.016 4.016 25 C -0.659 4.659 26 C -0.196 4.196 27 H 0.077 0.923 28 H 0.143 0.857 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.177 0.823 34 H 0.156 0.844 35 H 0.143 0.857 36 H 0.101 0.899 37 H 0.146 0.854 38 H 0.110 0.890 39 H 0.168 0.832 40 H 0.180 0.820 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.450 -24.260 -3.256 25.077 hybrid contribution 0.598 1.143 -0.451 1.367 sum -4.852 -23.118 -3.707 23.910 Atomic orbital electron populations 1.70047 1.05898 1.27308 1.46978 1.25256 0.95825 0.98707 0.96800 0.85665 0.79171 0.80553 0.78136 1.19153 1.20256 1.20221 1.21362 0.91802 0.80901 1.52416 0.89133 1.83972 1.34210 1.11344 1.79114 1.19278 0.90247 0.87936 0.92432 1.21170 0.93858 0.98921 1.11072 1.20688 0.98365 0.92336 0.97986 1.20406 0.93467 0.96918 1.10533 1.18890 0.93360 0.92268 0.99173 1.20268 1.02540 0.94287 0.93456 1.19966 0.74148 0.79633 0.92762 1.90911 1.49902 1.62604 1.39615 1.70784 1.61146 1.34199 1.36922 1.14007 0.79449 0.83037 0.76485 1.93554 1.33026 1.85209 1.78629 1.30843 1.12357 1.17930 1.13298 1.22659 0.93864 0.82913 1.01469 1.87791 1.61223 1.18964 1.61542 1.22739 0.88219 0.97467 0.93184 1.29844 1.08993 1.13978 1.13056 1.19940 0.99003 0.89946 1.10679 0.92257 0.85665 0.87512 0.87877 0.88137 0.87885 0.82261 0.84436 0.85708 0.89877 0.85388 0.89020 0.83203 0.81969 0.86837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.01 13.67 55.48 0.76 -25.25 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.39 -11.29 9.49 30.89 0.29 -11.00 16 8 H 0.09 2.46 5.20 -52.49 -0.27 2.19 16 9 O -0.18 -5.44 9.76 0.05 0.00 -5.44 16 10 C 0.15 3.99 6.65 -39.11 -0.26 3.73 16 11 C -0.23 -5.46 9.17 -39.40 -0.36 -5.83 16 12 C -0.08 -1.56 10.04 -39.61 -0.40 -1.96 16 13 C -0.19 -3.87 9.70 -39.53 -0.38 -4.26 16 14 C -0.04 -0.72 4.37 -104.65 -0.46 -1.18 16 15 C -0.06 -0.99 5.90 -29.03 -0.17 -1.17 16 16 C 0.55 9.29 7.39 -12.02 -0.09 9.20 16 17 O -0.55 -11.55 14.17 -10.97 -0.16 -11.70 16 18 N -1.12 -14.11 10.23 30.51 0.31 -13.79 16 19 S 2.27 22.90 3.85 -107.50 -0.41 22.49 16 20 O -0.92 -14.50 17.31 -51.53 -0.89 -15.39 16 21 C -0.61 -5.20 6.57 37.58 0.25 -4.95 16 22 C 0.07 0.45 6.71 37.58 0.25 0.70 16 23 O -0.38 -2.14 10.41 -35.23 -0.37 -2.50 16 24 C 0.06 0.21 6.71 37.48 0.25 0.46 16 25 C -0.52 -1.89 6.85 37.48 0.26 -1.63 16 26 C -0.18 -4.03 9.65 -39.39 -0.38 -4.41 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.13 2.93 5.64 -52.48 -0.30 2.64 16 29 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16 30 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.10 1.36 8.08 -51.93 -0.42 0.94 16 32 H 0.10 1.38 8.08 -51.93 -0.42 0.96 16 33 H 0.16 1.77 7.17 -51.93 -0.37 1.40 16 34 H 0.14 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.52 7.92 -51.93 -0.41 0.11 16 37 H 0.13 0.10 8.14 -51.93 -0.42 -0.32 16 38 H 0.09 0.27 7.92 -51.93 -0.41 -0.14 16 39 H 0.15 0.20 8.14 -51.93 -0.42 -0.23 16 40 H 0.16 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.11 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -41.40 358.17 -6.80 -48.20 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.12 Total: 3.13 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -1.30 Total: -21.31 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 1.07 Total: -39.05 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -1.41 Total: -35.03 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 22.90 SS G_CDS: -0.41 Total: 22.49 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -41.40 -6.80 -48.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891365782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.798 kcal (2) G-P(sol) polarization free energy of solvation -41.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds