Wall clock time and date at job start Tue Mar 31 2020 22:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86806 * 120.00060 * 2 1 4 4 H 1.48494 * 109.47360 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47049 * 300.00293 * 3 2 1 6 6 H 1.48504 * 109.46741 * 60.00121 * 3 2 1 7 7 C 1.38661 * 120.00489 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00196 * 179.97438 * 7 2 1 9 9 O 1.34826 * 119.99413 * 0.02562 * 7 2 1 10 10 C 1.35754 * 116.99650 * 185.05921 * 9 7 2 11 11 C 1.38896 * 120.07028 * 354.48256 * 10 9 7 12 12 C 1.38080 * 119.93608 * 179.97438 * 11 10 9 13 13 C 1.38329 * 120.06465 * 359.97438 * 12 11 10 14 14 C 1.38280 * 120.13652 * 0.03847 * 13 12 11 15 15 C 1.50703 * 119.96192 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47201 * 269.98278 * 15 14 13 17 17 O 1.21533 * 120.00101 * 0.02562 * 16 15 14 18 18 N 1.32425 * 119.99618 * 179.97438 * 16 15 14 19 19 S 1.49355 * 119.99724 * 179.97438 * 18 16 15 20 20 O 1.42102 * 107.63352 * 57.55640 * 19 18 16 21 21 C 1.82324 * 107.95795 * 294.16026 * 19 18 16 22 22 C 1.53815 * 107.51869 * 291.91956 * 21 19 18 23 23 O 1.42524 * 109.57362 * 302.09422 * 22 21 19 24 24 C 1.42534 * 116.07218 * 75.06428 * 23 22 21 25 25 C 1.53623 * 109.53404 * 284.94065 * 24 23 22 26 26 C 1.38115 * 120.07344 * 359.96601 * 14 13 12 27 27 H 0.96992 * 119.99980 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.03576 * 359.95560 * 11 10 9 29 29 H 1.07992 * 119.96738 * 179.97438 * 12 11 10 30 30 H 1.07994 * 119.92852 * 180.02562 * 13 12 11 31 31 H 1.09002 * 109.47340 * 29.98207 * 15 14 13 32 32 H 1.08999 * 109.47064 * 149.98368 * 15 14 13 33 33 H 1.08996 * 109.83013 * 51.50769 * 21 19 18 34 34 H 1.09003 * 109.82697 * 172.45810 * 21 19 18 35 35 H 1.09000 * 109.44101 * 182.06197 * 22 21 19 36 36 H 1.09004 * 109.43186 * 62.11833 * 22 21 19 37 37 H 1.09004 * 109.45904 * 164.91672 * 24 23 22 38 38 H 1.08997 * 109.44720 * 44.95625 * 24 23 22 39 39 H 1.09004 * 109.83180 * 298.41488 * 25 24 23 40 40 H 1.08998 * 109.88825 * 177.50114 * 25 24 23 41 41 H 1.08000 * 120.03642 * 180.29367 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7095 1.3465 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0016 10 6 2.0701 -3.5046 0.1046 11 6 3.4575 -3.4394 0.0926 12 6 4.2026 -4.5968 0.2014 13 6 3.5688 -5.8203 0.3227 14 6 2.1877 -5.8885 0.3346 15 6 1.5012 -7.2236 0.4663 16 6 1.2665 -7.8052 -0.9040 17 8 1.6228 -7.1945 -1.8925 18 7 0.6729 -8.9821 -1.0309 19 16 0.4397 -9.5582 -2.3890 20 8 1.7008 -9.6587 -3.0363 21 6 -0.7537 -8.4872 -3.2567 22 6 -2.1097 -8.6340 -2.5458 23 8 -2.5093 -10.0021 -2.5573 24 6 -1.8255 -10.8620 -1.6492 25 6 -0.4150 -11.1553 -2.1828 26 6 1.4368 -4.7344 0.2261 27 1 -0.4850 0.8400 -0.0004 28 1 3.9530 -2.4844 -0.0019 29 1 5.2814 -4.5467 0.1917 30 1 4.1537 -6.7241 0.4080 31 1 2.1301 -7.9000 1.0453 32 1 0.5456 -7.0923 0.9738 33 1 -0.4209 -7.4503 -3.2114 34 1 -0.8453 -8.8021 -4.2962 35 1 -2.8575 -8.0330 -3.0631 36 1 -2.0179 -8.2912 -1.5151 37 1 -2.3774 -11.7966 -1.5487 38 1 -1.7520 -10.3772 -0.6758 39 1 -0.4819 -11.6658 -3.1436 40 1 0.1288 -11.7767 -1.4713 41 1 0.3582 -4.7879 0.2403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891365782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:49 Heat of formation + Delta-G solvation = -97.463837 kcal Electronic energy + Delta-G solvation = -26921.218775 eV Core-core repulsion = 22894.709666 eV Total energy + Delta-G solvation = -4026.509109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.19611 -40.44073 -39.87525 -38.24725 -37.55571 -34.45437 -34.34505 -33.47782 -33.25183 -31.84559 -30.90213 -28.65947 -27.26469 -25.65345 -23.89900 -23.58883 -23.16737 -21.85603 -19.50609 -19.26799 -18.76127 -18.14327 -18.02068 -17.66457 -17.26912 -16.86850 -16.63329 -16.40507 -16.17754 -16.08603 -15.72339 -15.46002 -15.31887 -14.83497 -14.74690 -14.35083 -14.31231 -13.99601 -13.91565 -13.60391 -13.41232 -13.01151 -12.99189 -12.79478 -12.54235 -12.35674 -12.24151 -12.08845 -12.03677 -11.76190 -11.26245 -11.24478 -11.16598 -10.98704 -10.80837 -10.74664 -9.64947 -8.99553 -8.47357 -6.15680 -1.74189 0.51334 0.73428 1.02974 1.33839 1.42427 1.52592 1.55264 1.92135 2.17428 2.45947 2.77879 2.83622 3.09311 3.15658 3.43023 3.53886 3.64714 3.76553 3.90029 4.03631 4.07969 4.11510 4.25216 4.30761 4.49072 4.52024 4.56851 4.60583 4.67244 4.70172 4.75097 4.78304 5.03439 5.12811 5.27591 5.39663 5.63301 5.70747 5.75528 5.89318 6.02498 6.21690 6.93073 6.97229 7.77958 8.76380 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018479 B = 0.002674 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.873138 B =10469.013287 C =11375.699705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.020 2.980 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.265 1.265 7 C -0.415 4.415 8 H 0.099 0.901 9 O -0.232 6.232 10 C 0.115 3.885 11 C -0.246 4.246 12 C -0.073 4.073 13 C -0.187 4.187 14 C -0.030 4.030 15 C -0.067 4.067 16 C 0.539 3.461 17 O -0.608 6.608 18 N -1.111 6.111 19 S 2.231 3.769 20 O -0.988 6.988 21 C -0.601 4.601 22 C 0.072 3.928 23 O -0.378 6.378 24 C 0.049 3.951 25 C -0.464 4.464 26 C -0.191 4.191 27 H 0.273 0.727 28 H 0.120 0.880 29 H 0.145 0.855 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.159 0.841 35 H 0.134 0.866 36 H 0.082 0.918 37 H 0.172 0.828 38 H 0.098 0.902 39 H 0.188 0.812 40 H 0.196 0.804 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.887 -28.074 -2.154 28.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.177 1.177 5 H -0.193 1.193 6 H -0.190 1.190 7 C -0.491 4.491 8 H 0.116 0.884 9 O -0.139 6.139 10 C 0.065 3.935 11 C -0.266 4.266 12 C -0.091 4.091 13 C -0.206 4.206 14 C -0.031 4.031 15 C -0.108 4.108 16 C 0.327 3.673 17 O -0.490 6.490 18 N -1.019 6.019 19 S 2.434 3.566 20 O -0.974 6.974 21 C -0.737 4.737 22 C -0.007 4.007 23 O -0.296 6.296 24 C -0.029 4.029 25 C -0.605 4.605 26 C -0.210 4.210 27 H 0.082 0.918 28 H 0.138 0.862 29 H 0.162 0.838 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.177 0.823 35 H 0.152 0.848 36 H 0.101 0.899 37 H 0.189 0.811 38 H 0.116 0.884 39 H 0.205 0.795 40 H 0.213 0.787 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.515 -27.941 -2.696 28.607 hybrid contribution 0.550 1.821 -0.642 2.007 sum -4.965 -26.120 -3.338 26.797 Atomic orbital electron populations 1.70185 1.07958 1.28714 1.49017 1.26596 0.96916 1.02640 0.95839 0.84517 0.78120 0.74759 0.78683 1.17723 1.19299 1.18960 1.21862 0.92495 0.81502 1.53247 0.88374 1.83932 1.35796 1.12469 1.81675 1.19831 0.91562 0.87907 0.94197 1.21289 0.93233 1.00068 1.11966 1.21107 1.00201 0.91416 0.96366 1.20957 0.93776 0.97966 1.07890 1.19369 0.93832 0.93303 0.96576 1.20391 1.03937 0.92391 0.94126 1.20154 0.74076 0.80812 0.92283 1.90893 1.52543 1.64287 1.41311 1.70542 1.60132 1.32144 1.39041 1.15144 0.79922 0.86118 0.75408 1.93502 1.37559 1.87249 1.79120 1.30688 1.12563 1.15710 1.14784 1.22670 0.92581 0.84154 1.01270 1.87803 1.61345 1.18238 1.62221 1.23242 0.87802 0.98882 0.92936 1.29901 1.07540 1.06829 1.16236 1.20194 0.99426 0.90182 1.11215 0.91803 0.86209 0.83760 0.84424 0.85130 0.85665 0.85751 0.82304 0.84804 0.89938 0.81052 0.88373 0.79505 0.78709 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.11 13.67 21.61 0.30 -57.81 16 2 C -0.02 -1.34 5.49 84.84 0.47 -0.88 16 3 Si 1.02 44.68 29.55 68.60 2.03 46.71 16 4 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.41 -25.53 9.49 67.92 0.64 -24.88 16 8 H 0.10 5.62 5.20 -2.91 -0.02 5.60 16 9 O -0.23 -14.86 9.76 -22.75 -0.22 -15.09 16 10 C 0.12 6.33 6.65 22.58 0.15 6.48 16 11 C -0.25 -12.08 9.17 22.39 0.21 -11.87 16 12 C -0.07 -2.96 10.04 22.25 0.22 -2.74 16 13 C -0.19 -7.22 9.70 22.30 0.22 -7.01 16 14 C -0.03 -1.20 4.37 -19.88 -0.09 -1.29 16 15 C -0.07 -2.05 5.90 29.10 0.17 -1.88 16 16 C 0.54 18.41 7.39 88.02 0.65 19.06 16 17 O -0.61 -26.65 14.17 11.77 0.17 -26.49 16 18 N -1.11 -26.96 10.23 -176.98 -1.81 -28.77 16 19 S 2.23 42.60 3.85 -56.49 -0.22 42.39 16 20 O -0.99 -31.94 17.31 -133.39 -2.31 -34.25 16 21 C -0.60 -10.27 6.57 72.26 0.47 -9.79 16 22 C 0.07 0.83 6.71 72.26 0.48 1.31 16 23 O -0.38 -2.81 10.41 -148.98 -1.55 -4.36 16 24 C 0.05 0.06 6.71 72.19 0.48 0.54 16 25 C -0.46 -0.98 6.85 72.19 0.49 -0.48 16 26 C -0.19 -9.18 9.65 22.39 0.22 -8.96 16 27 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 28 H 0.12 5.87 5.64 -2.91 -0.02 5.85 16 29 H 0.14 4.70 8.06 -2.91 -0.02 4.67 16 30 H 0.14 4.38 8.06 -2.91 -0.02 4.35 16 31 H 0.13 3.19 8.08 -2.39 -0.02 3.18 16 32 H 0.13 3.23 8.08 -2.39 -0.02 3.21 16 33 H 0.12 3.09 7.17 -2.39 -0.02 3.07 16 34 H 0.16 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 0.95 7.92 -2.38 -0.02 0.93 16 37 H 0.17 -0.99 8.14 -2.38 -0.02 -1.00 16 38 H 0.10 0.10 7.92 -2.39 -0.02 0.08 16 39 H 0.19 -0.71 8.14 -2.38 -0.02 -0.73 16 40 H 0.20 -0.62 8.14 -2.39 -0.02 -0.63 16 41 H 0.11 5.23 8.06 -2.91 -0.02 5.20 16 Total: -1.00 -100.95 358.17 2.23 -98.71 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 1.06 Total: 21.33 kcal Atomic # 6 Polarization: -47.17 SS G_CDS: 4.80 Total: -42.37 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -1.52 Total: -86.58 kcal Atomic # 8 Polarization: -76.26 SS G_CDS: -3.92 Total: -80.18 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 42.60 SS G_CDS: -0.22 Total: 42.39 kcal Total: -100.95 2.23 -98.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891365782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.251 kcal (2) G-P(sol) polarization free energy of solvation -100.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds