Wall clock time and date at job start Tue Mar 31 2020 22:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86795 * 120.00427 * 2 1 4 4 H 1.48496 * 109.47316 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47110 * 119.99817 * 3 2 1 6 6 H 1.48502 * 109.47251 * 239.99941 * 3 2 1 7 7 C 1.40313 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99771 * 159.51674 * 7 2 1 9 9 C 1.40540 * 120.00249 * 339.52741 * 7 2 1 10 10 C 1.44191 * 123.71016 * 335.42055 * 9 7 2 11 11 C 1.32768 * 114.42760 * 179.76044 * 10 9 7 12 12 S 1.75476 * 111.35914 * 0.49768 * 11 10 9 13 13 C 1.39539 * 123.71469 * 155.71571 * 9 7 2 14 14 C 1.46238 * 125.23177 * 359.97438 * 13 9 7 15 15 O 1.21761 * 119.99721 * 359.97438 * 14 13 9 16 16 N 1.34777 * 120.00104 * 180.02562 * 14 13 9 17 17 C 1.46496 * 119.99990 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.47308 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.53763 * 60.00097 * 18 17 16 20 20 O 1.20830 * 119.99961 * 120.00123 * 19 18 17 21 21 O 1.34226 * 120.00082 * 300.00031 * 19 18 17 22 22 C 1.53170 * 109.54258 * 299.82748 * 18 17 16 23 23 C 1.53280 * 109.06380 * 297.02257 * 22 18 17 24 24 O 1.42903 * 109.46359 * 302.45009 * 23 22 18 25 25 C 1.42902 * 114.09673 * 61.15616 * 24 23 22 26 26 C 1.53091 * 109.41571 * 298.84255 * 25 24 23 27 27 H 0.96997 * 119.99945 * 174.00079 * 1 2 3 28 28 H 1.08001 * 122.78654 * 0.02562 * 10 9 7 29 29 H 1.07996 * 124.31873 * 180.22838 * 11 10 9 30 30 H 0.96998 * 119.99618 * 359.97438 * 16 14 13 31 31 H 1.08994 * 109.47228 * 300.00037 * 17 16 14 32 32 H 1.09003 * 109.47095 * 59.99964 * 17 16 14 33 33 H 0.96705 * 117.00254 * 180.02562 * 21 19 18 34 34 H 1.08999 * 109.52946 * 57.01567 * 22 18 17 35 35 H 1.09003 * 109.52372 * 177.20617 * 22 18 17 36 36 H 1.08997 * 109.46177 * 182.45242 * 23 22 18 37 37 H 1.09003 * 109.46917 * 62.45109 * 23 22 18 38 38 H 1.08996 * 109.48452 * 178.86415 * 25 24 23 39 39 H 1.08996 * 109.49270 * 58.82888 * 25 24 23 40 40 H 1.09002 * 109.52708 * 297.70780 * 26 25 24 41 41 H 1.08999 * 109.57629 * 177.54303 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 1.2756 2.7464 0.0006 5 1 3.0942 1.6962 1.2125 6 1 3.0943 1.6963 -1.2125 7 6 2.0079 -1.2152 0.0005 8 1 3.0367 -1.2449 -0.3268 9 6 1.3718 -2.3937 0.4268 10 6 0.2459 -2.4146 1.3273 11 6 -0.2140 -3.6291 1.6033 12 16 0.7178 -4.8675 0.7805 13 6 1.7639 -3.6726 0.0297 14 6 2.8746 -3.9722 -0.8731 15 8 3.5396 -3.0662 -1.3417 16 7 3.1616 -5.2510 -1.1873 17 6 4.2740 -5.5511 -2.0921 18 6 4.3840 -7.0655 -2.2805 19 6 3.1017 -7.5945 -2.8696 20 8 3.1160 -8.1632 -3.9356 21 8 1.9437 -7.4341 -2.2100 22 6 4.6394 -7.7331 -0.9258 23 6 5.9839 -7.2467 -0.3735 24 8 7.0198 -7.5438 -1.3119 25 6 6.8567 -6.9086 -2.5815 26 6 5.5495 -7.3813 -3.2230 27 1 -0.4850 -0.8354 -0.0878 28 1 -0.1900 -1.5165 1.7396 29 1 -1.0517 -3.8295 2.2547 30 1 2.6316 -5.9727 -0.8142 31 1 4.0956 -5.0766 -3.0570 32 1 5.2020 -5.1700 -1.6659 33 1 1.1476 -7.7907 -2.6274 34 1 3.8410 -7.4680 -0.2327 35 1 4.6683 -8.8154 -1.0528 36 1 6.1927 -7.7508 0.5701 37 1 5.9408 -6.1701 -0.2085 38 1 7.6941 -7.1692 -3.2287 39 1 6.8248 -5.8275 -2.4459 40 1 5.5966 -8.4564 -3.3963 41 1 5.4008 -6.8655 -4.1717 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901702892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:31 Heat of formation + Delta-G solvation = -163.045516 kcal Electronic energy + Delta-G solvation = -27957.948484 eV Core-core repulsion = 23928.595540 eV Total energy + Delta-G solvation = -4029.352944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.23657 -39.20700 -38.23849 -36.51676 -36.24808 -35.19624 -33.05486 -32.53815 -31.34228 -29.15540 -27.47085 -26.10065 -24.81055 -23.87782 -22.44314 -22.31845 -20.20422 -19.32112 -19.05506 -18.35630 -17.55594 -17.25294 -16.37211 -16.17725 -15.96139 -15.51512 -15.16774 -14.89235 -14.50913 -14.30778 -14.19571 -13.90579 -13.62667 -13.33992 -13.24502 -13.02615 -12.61772 -12.33437 -12.11012 -11.94220 -11.67583 -11.57627 -11.50262 -11.42901 -11.10918 -10.96825 -10.76390 -10.71903 -10.46638 -10.46184 -10.11518 -9.77237 -9.68004 -9.18699 -8.57502 -8.34669 -7.80546 -7.37887 -7.34837 -4.62166 1.99599 2.05610 2.82229 2.92358 3.03478 3.08920 3.30140 3.52057 3.64443 3.69605 3.84593 3.88782 4.32396 4.33172 4.39444 4.61032 4.71466 4.92758 5.02294 5.05492 5.15468 5.37033 5.39689 5.48535 5.53130 5.65436 5.74104 5.80305 5.80790 5.87067 5.97269 6.36843 6.39697 6.74034 6.94585 6.98703 7.15091 7.23328 7.24654 7.72743 7.78393 7.90355 8.38369 8.46696 8.71010 9.49877 9.74009 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.003705 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.081308 B = 7555.594554 C = 8449.799697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.029 3.971 3 Si 1.074 2.926 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.424 4.424 8 H 0.110 0.890 9 C 0.112 3.888 10 C -0.143 4.143 11 C -0.188 4.188 12 S -0.031 6.031 13 C -0.436 4.436 14 C 0.600 3.400 15 O -0.566 6.566 16 N -0.747 5.747 17 C 0.136 3.864 18 C -0.062 4.062 19 C 0.493 3.507 20 O -0.516 6.516 21 O -0.504 6.504 22 C -0.143 4.143 23 C 0.060 3.940 24 O -0.380 6.380 25 C 0.058 3.942 26 C -0.132 4.132 27 H 0.300 0.700 28 H 0.130 0.870 29 H 0.140 0.860 30 H 0.398 0.602 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.411 0.589 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.685 -11.423 -0.925 12.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.195 4.195 3 Si 0.895 3.105 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.455 4.455 8 H 0.127 0.873 9 C 0.102 3.898 10 C -0.176 4.176 11 C -0.322 4.322 12 S 0.225 5.775 13 C -0.555 4.555 14 C 0.397 3.603 15 O -0.449 6.449 16 N -0.404 5.404 17 C 0.011 3.989 18 C -0.064 4.064 19 C 0.335 3.665 20 O -0.404 6.404 21 O -0.316 6.316 22 C -0.181 4.181 23 C -0.017 4.017 24 O -0.299 6.299 25 C -0.019 4.019 26 C -0.170 4.170 27 H 0.115 0.885 28 H 0.148 0.852 29 H 0.158 0.842 30 H 0.235 0.765 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.271 0.729 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.082 0.918 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.317 -10.834 -1.306 12.609 hybrid contribution -1.217 -0.779 -0.199 1.459 sum 5.100 -11.613 -1.505 12.772 Atomic orbital electron populations 1.70439 1.08396 1.34528 1.26646 1.27551 0.95660 1.05259 0.91057 0.83504 0.75574 0.72704 0.78678 1.19653 1.19593 1.19433 1.20985 1.02036 0.91300 1.31154 0.87261 1.17898 0.89535 0.92392 0.90013 1.21585 0.98699 0.96929 1.00392 1.24968 1.04504 0.96760 1.06018 1.82774 1.30787 1.12385 1.51584 1.22378 1.14254 0.94475 1.24388 1.16792 0.82846 0.80838 0.79818 1.90662 1.52776 1.45207 1.56258 1.45934 1.34447 1.08863 1.51198 1.21156 0.92444 0.89644 0.95658 1.20913 0.90280 0.97385 0.97798 1.23198 0.85393 0.75313 0.82572 1.90697 1.87193 1.40090 1.22393 1.84512 1.18331 1.75286 1.53428 1.22286 1.00147 1.00967 0.94706 1.22668 0.85719 1.00970 0.92320 1.87933 1.46979 1.71850 1.23135 1.22690 0.96843 0.97334 0.85043 1.22111 0.92773 1.03821 0.98304 0.88528 0.85199 0.84180 0.76509 0.91638 0.90423 0.72905 0.89103 0.90263 0.88076 0.91849 0.88060 0.92113 0.89605 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.32 12.49 55.57 0.69 -18.62 16 2 C 0.03 0.70 5.24 -17.28 -0.09 0.61 16 3 Si 1.07 20.98 29.98 -169.99 -5.10 15.88 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 6 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.42 -11.24 8.44 -37.93 -0.32 -11.56 16 8 H 0.11 3.06 6.13 -52.48 -0.32 2.74 16 9 C 0.11 2.89 5.40 -106.21 -0.57 2.32 16 10 C -0.14 -3.29 8.19 -39.12 -0.32 -3.61 16 11 C -0.19 -3.83 11.07 28.86 0.32 -3.51 16 12 S -0.03 -0.63 22.25 -107.50 -2.39 -3.02 16 13 C -0.44 -10.64 6.51 -35.89 -0.23 -10.87 16 14 C 0.60 14.20 7.76 -13.05 -0.10 14.10 16 15 O -0.57 -15.08 14.46 5.13 0.07 -15.00 16 16 N -0.75 -13.72 4.74 -61.75 -0.29 -14.01 16 17 C 0.14 2.10 4.00 -4.04 -0.02 2.08 16 18 C -0.06 -0.77 0.50 -155.48 -0.08 -0.85 16 19 C 0.49 6.61 6.92 36.01 0.25 6.86 16 20 O -0.52 -7.90 16.73 -18.75 -0.31 -8.21 16 21 O -0.50 -6.08 10.97 -39.25 -0.43 -6.51 16 22 C -0.14 -1.59 4.74 -26.50 -0.13 -1.72 16 23 C 0.06 0.66 6.57 37.30 0.25 0.90 16 24 O -0.38 -4.43 10.77 -35.23 -0.38 -4.81 16 25 C 0.06 0.58 6.57 37.20 0.24 0.83 16 26 C -0.13 -1.44 4.23 -26.59 -0.11 -1.55 16 27 H 0.30 7.58 6.23 -40.82 -0.25 7.33 16 28 H 0.13 2.95 6.79 -52.49 -0.36 2.60 16 29 H 0.14 2.38 8.06 -52.49 -0.42 1.95 16 30 H 0.40 6.75 4.43 -40.82 -0.18 6.57 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.19 5.01 -51.93 -0.26 0.93 16 33 H 0.41 3.30 9.10 45.56 0.41 3.71 16 34 H 0.09 1.05 6.81 -51.93 -0.35 0.70 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.77 6.60 -51.93 -0.34 0.43 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.63 6.60 -51.93 -0.34 0.29 16 40 H 0.09 0.94 8.03 -51.93 -0.42 0.52 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 344.34 15.07 5.19 5.19 Total: -1.00 -31.45 344.34 -7.61 -39.06 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -3.75 Total: 16.03 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -0.91 Total: -5.98 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.40 Total: -32.63 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -1.05 Total: -34.54 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.10 Total: 15.88 kcal Atomic # 16 Polarization: -0.63 SS G_CDS: -2.39 Total: -3.02 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.45 -7.61 -39.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901702892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.986 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds