Wall clock time and date at job start Tue Mar 31 2020 22:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86795 * 120.00427 * 2 1 4 4 H 1.48496 * 109.47316 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47110 * 119.99817 * 3 2 1 6 6 H 1.48502 * 109.47251 * 239.99941 * 3 2 1 7 7 C 1.40313 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99771 * 159.51674 * 7 2 1 9 9 C 1.40540 * 120.00249 * 339.52741 * 7 2 1 10 10 C 1.44191 * 123.71016 * 335.42055 * 9 7 2 11 11 C 1.32768 * 114.42760 * 179.76044 * 10 9 7 12 12 S 1.75476 * 111.35914 * 0.49768 * 11 10 9 13 13 C 1.39539 * 123.71469 * 155.71571 * 9 7 2 14 14 C 1.46238 * 125.23177 * 359.97438 * 13 9 7 15 15 O 1.21761 * 119.99721 * 359.97438 * 14 13 9 16 16 N 1.34777 * 120.00104 * 180.02562 * 14 13 9 17 17 C 1.46496 * 119.99990 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.47308 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.53763 * 60.00097 * 18 17 16 20 20 O 1.20830 * 119.99961 * 120.00123 * 19 18 17 21 21 O 1.34226 * 120.00082 * 300.00031 * 19 18 17 22 22 C 1.53170 * 109.54258 * 299.82748 * 18 17 16 23 23 C 1.53280 * 109.06380 * 297.02257 * 22 18 17 24 24 O 1.42903 * 109.46359 * 302.45009 * 23 22 18 25 25 C 1.42902 * 114.09673 * 61.15616 * 24 23 22 26 26 C 1.53091 * 109.41571 * 298.84255 * 25 24 23 27 27 H 0.96997 * 119.99945 * 174.00079 * 1 2 3 28 28 H 1.08001 * 122.78654 * 0.02562 * 10 9 7 29 29 H 1.07996 * 124.31873 * 180.22838 * 11 10 9 30 30 H 0.96998 * 119.99618 * 359.97438 * 16 14 13 31 31 H 1.08994 * 109.47228 * 300.00037 * 17 16 14 32 32 H 1.09003 * 109.47095 * 59.99964 * 17 16 14 33 33 H 0.96705 * 117.00254 * 180.02562 * 21 19 18 34 34 H 1.08999 * 109.52946 * 57.01567 * 22 18 17 35 35 H 1.09003 * 109.52372 * 177.20617 * 22 18 17 36 36 H 1.08997 * 109.46177 * 182.45242 * 23 22 18 37 37 H 1.09003 * 109.46917 * 62.45109 * 23 22 18 38 38 H 1.08996 * 109.48452 * 178.86415 * 25 24 23 39 39 H 1.08996 * 109.49270 * 58.82888 * 25 24 23 40 40 H 1.09002 * 109.52708 * 297.70780 * 26 25 24 41 41 H 1.08999 * 109.57629 * 177.54303 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 1.2756 2.7464 0.0006 5 1 3.0942 1.6962 1.2125 6 1 3.0943 1.6963 -1.2125 7 6 2.0079 -1.2152 0.0005 8 1 3.0367 -1.2449 -0.3268 9 6 1.3718 -2.3937 0.4268 10 6 0.2459 -2.4146 1.3273 11 6 -0.2140 -3.6291 1.6033 12 16 0.7178 -4.8675 0.7805 13 6 1.7639 -3.6726 0.0297 14 6 2.8746 -3.9722 -0.8731 15 8 3.5396 -3.0662 -1.3417 16 7 3.1616 -5.2510 -1.1873 17 6 4.2740 -5.5511 -2.0921 18 6 4.3840 -7.0655 -2.2805 19 6 3.1017 -7.5945 -2.8696 20 8 3.1160 -8.1632 -3.9356 21 8 1.9437 -7.4341 -2.2100 22 6 4.6394 -7.7331 -0.9258 23 6 5.9839 -7.2467 -0.3735 24 8 7.0198 -7.5438 -1.3119 25 6 6.8567 -6.9086 -2.5815 26 6 5.5495 -7.3813 -3.2230 27 1 -0.4850 -0.8354 -0.0878 28 1 -0.1900 -1.5165 1.7396 29 1 -1.0517 -3.8295 2.2547 30 1 2.6316 -5.9727 -0.8142 31 1 4.0956 -5.0766 -3.0570 32 1 5.2020 -5.1700 -1.6659 33 1 1.1476 -7.7907 -2.6274 34 1 3.8410 -7.4680 -0.2327 35 1 4.6683 -8.8154 -1.0528 36 1 6.1927 -7.7508 0.5701 37 1 5.9408 -6.1701 -0.2085 38 1 7.6941 -7.1692 -3.2287 39 1 6.8248 -5.8275 -2.4459 40 1 5.5966 -8.4564 -3.3963 41 1 5.4008 -6.8655 -4.1717 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901702892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:31 Heat of formation + Delta-G solvation = -184.837425 kcal Electronic energy + Delta-G solvation = -27958.893452 eV Core-core repulsion = 23928.595540 eV Total energy + Delta-G solvation = -4030.297912 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.30583 -40.32720 -39.85749 -38.25489 -37.30959 -36.49020 -34.86580 -33.98881 -32.22775 -30.92495 -28.84446 -27.49018 -26.24950 -24.83318 -24.14879 -23.28404 -21.91183 -20.89902 -20.44620 -19.65164 -18.89014 -18.34571 -18.08442 -17.19981 -17.05062 -16.63244 -16.54233 -16.12645 -15.92160 -15.76611 -15.67412 -15.48262 -14.96717 -14.70015 -14.50438 -14.45470 -13.91637 -13.74451 -13.55948 -13.43773 -13.16401 -12.75193 -12.73998 -12.61954 -12.46067 -12.44909 -12.01852 -11.92164 -11.85875 -11.82212 -11.50414 -11.38666 -10.97309 -10.61219 -10.47091 -10.00274 -9.64795 -9.21704 -9.09828 -6.52430 0.19924 0.97694 1.22927 1.39990 1.47879 1.68453 1.79540 1.86260 1.90443 2.26062 2.39835 2.51186 2.86814 3.16699 3.25824 3.36497 3.53030 3.83920 3.99397 4.13841 4.16658 4.21579 4.37161 4.45080 4.51756 4.56455 4.66015 4.68376 4.73133 4.90775 4.95339 4.99667 5.04386 5.20006 5.36086 5.38824 5.43525 5.61360 5.87758 5.95018 6.13211 6.50655 6.63506 6.80258 6.95567 7.67900 7.84565 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.003705 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.081308 B = 7555.594554 C = 8449.799697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.003 3.997 3 Si 1.118 2.882 4 H -0.259 1.259 5 H -0.258 1.258 6 H -0.269 1.269 7 C -0.467 4.467 8 H 0.082 0.918 9 C 0.089 3.911 10 C -0.173 4.173 11 C -0.171 4.171 12 S 0.040 5.960 13 C -0.469 4.469 14 C 0.591 3.409 15 O -0.604 6.604 16 N -0.728 5.728 17 C 0.136 3.864 18 C -0.057 4.057 19 C 0.496 3.504 20 O -0.535 6.535 21 O -0.508 6.508 22 C -0.139 4.139 23 C 0.059 3.941 24 O -0.388 6.388 25 C 0.056 3.944 26 C -0.127 4.127 27 H 0.290 0.710 28 H 0.126 0.874 29 H 0.183 0.817 30 H 0.406 0.594 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.429 0.571 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.046 0.954 38 H 0.125 0.875 39 H 0.054 0.946 40 H 0.092 0.908 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.513 -13.295 -0.231 14.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.217 4.217 3 Si 0.934 3.066 4 H -0.183 1.183 5 H -0.182 1.182 6 H -0.194 1.194 7 C -0.498 4.498 8 H 0.100 0.900 9 C 0.079 3.921 10 C -0.207 4.207 11 C -0.306 4.306 12 S 0.296 5.704 13 C -0.588 4.588 14 C 0.387 3.613 15 O -0.490 6.490 16 N -0.384 5.384 17 C 0.012 3.988 18 C -0.059 4.059 19 C 0.338 3.662 20 O -0.425 6.425 21 O -0.322 6.322 22 C -0.176 4.176 23 C -0.017 4.017 24 O -0.306 6.306 25 C -0.020 4.020 26 C -0.166 4.166 27 H 0.103 0.897 28 H 0.144 0.856 29 H 0.200 0.800 30 H 0.245 0.755 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.292 0.708 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.139 0.861 37 H 0.065 0.935 38 H 0.143 0.857 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.118 -12.782 -0.607 14.184 hybrid contribution -1.191 -0.443 -0.436 1.343 sum 4.927 -13.226 -1.042 14.152 Atomic orbital electron populations 1.70528 1.08594 1.33743 1.28377 1.28702 0.95786 1.07490 0.89715 0.82985 0.74868 0.69630 0.79112 1.18326 1.18203 1.19436 1.20954 1.01383 0.93189 1.34252 0.90013 1.18355 0.90628 0.92875 0.90276 1.21447 0.99441 0.98075 1.01717 1.25518 1.04436 0.95863 1.04747 1.82373 1.28457 1.09846 1.49683 1.22941 1.15106 0.96171 1.24538 1.17000 0.82620 0.81973 0.79680 1.90634 1.54015 1.46800 1.57552 1.45694 1.34779 1.07290 1.50654 1.21246 0.91273 0.92088 0.94167 1.20912 0.90806 0.94873 0.99265 1.23287 0.85823 0.74859 0.82195 1.90694 1.87516 1.41139 1.23151 1.84456 1.18920 1.75219 1.53580 1.22290 1.00058 1.01781 0.93509 1.22719 0.85641 1.00200 0.93150 1.87931 1.47196 1.71936 1.23577 1.22809 0.97350 0.96907 0.84932 1.22113 0.92341 1.04164 0.97934 0.89678 0.85585 0.80016 0.75474 0.93030 0.90289 0.70821 0.89454 0.88598 0.86095 0.93539 0.85686 0.92791 0.88978 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.21 12.49 21.89 0.27 -39.94 16 2 C 0.00 0.13 5.24 85.38 0.45 0.57 16 3 Si 1.12 43.20 29.98 68.60 2.06 45.26 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 6 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.47 -25.90 8.44 23.34 0.20 -25.71 16 8 H 0.08 4.88 6.13 -2.91 -0.02 4.86 16 9 C 0.09 4.73 5.40 -20.89 -0.11 4.62 16 10 C -0.17 -7.98 8.19 22.61 0.19 -7.80 16 11 C -0.17 -6.56 11.07 66.64 0.74 -5.83 16 12 S 0.04 1.50 22.25 -56.49 -1.26 0.24 16 13 C -0.47 -23.00 6.51 24.66 0.16 -22.84 16 14 C 0.59 28.51 7.76 86.32 0.67 29.18 16 15 O -0.60 -33.58 14.46 -4.54 -0.07 -33.65 16 16 N -0.73 -26.52 4.74 -467.47 -2.22 -28.73 16 17 C 0.14 4.20 4.00 86.38 0.35 4.55 16 18 C -0.06 -1.34 0.50 -52.81 -0.03 -1.37 16 19 C 0.50 12.50 6.92 71.24 0.49 12.99 16 20 O -0.54 -15.60 16.73 21.95 0.37 -15.23 16 21 O -0.51 -11.24 10.97 -51.38 -0.56 -11.80 16 22 C -0.14 -2.79 4.74 30.75 0.15 -2.65 16 23 C 0.06 1.20 6.57 72.08 0.47 1.68 16 24 O -0.39 -8.29 10.77 -148.98 -1.60 -9.89 16 25 C 0.06 1.06 6.57 72.01 0.47 1.53 16 26 C -0.13 -2.59 4.23 30.68 0.13 -2.46 16 27 H 0.29 15.08 6.23 -92.71 -0.58 14.51 16 28 H 0.13 5.82 6.79 -2.91 -0.02 5.80 16 29 H 0.18 5.39 8.06 -2.91 -0.02 5.37 16 30 H 0.41 13.23 4.43 -92.71 -0.41 12.82 16 31 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 2.46 5.01 -2.39 -0.01 2.44 16 33 H 0.43 5.93 9.10 -74.05 -0.67 5.25 16 34 H 0.09 1.83 6.81 -2.39 -0.02 1.81 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.65 16 36 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.05 1.10 6.60 -2.39 -0.02 1.08 16 38 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.05 1.09 6.60 -2.39 -0.02 1.07 16 40 H 0.09 1.81 8.03 -2.39 -0.02 1.79 16 41 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -70.08 344.34 1.53 -68.55 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: 0.22 Total: 38.72 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 4.32 Total: -13.53 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -1.94 Total: -68.67 kcal Atomic # 8 Polarization: -68.70 SS G_CDS: -1.87 Total: -70.56 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.06 Total: 45.26 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -1.26 Total: 0.24 kcal Total: -70.08 1.53 -68.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901702892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.287 kcal (2) G-P(sol) polarization free energy of solvation -70.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds