Wall clock time and date at job start Tue Mar 31 2020 21:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00047 * 2 1 4 4 H 1.48497 * 109.47135 * 269.99698 * 3 2 1 5 5 H 1.48494 * 109.47213 * 29.99951 * 3 2 1 6 6 H 1.48507 * 109.47029 * 149.99396 * 3 2 1 7 7 C 1.37882 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99648 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00009 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46833 * 179.97438 * 9 7 2 11 11 C 1.38234 * 120.00257 * 89.99861 * 10 9 7 12 12 C 1.38238 * 119.99675 * 180.25732 * 11 10 9 13 13 C 1.38228 * 120.00114 * 359.50218 * 12 11 10 14 14 S 1.76205 * 120.00116 * 180.26456 * 13 12 11 15 15 O 1.42094 * 106.39919 * 23.74624 * 14 13 12 16 16 O 1.42101 * 106.40211 * 156.67103 * 14 13 12 17 17 N 1.65603 * 107.21426 * 270.20933 * 14 13 12 18 18 C 1.46500 * 119.99820 * 90.00270 * 17 14 13 19 19 C 1.50701 * 109.47469 * 94.99699 * 18 17 14 20 20 O 1.20822 * 119.99542 * 0.02562 * 19 18 17 21 21 O 1.34227 * 119.99964 * 179.97438 * 19 18 17 22 22 C 1.46498 * 120.00161 * 269.99763 * 17 14 13 23 23 C 1.52999 * 117.49923 * 188.75094 * 22 17 14 24 24 C 1.53001 * 117.50011 * 120.09055 * 22 17 14 25 25 C 1.38234 * 120.00051 * 0.47390 * 13 12 11 26 26 C 1.38235 * 119.99522 * 269.96874 * 10 9 7 27 27 H 0.96998 * 119.99939 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47727 * 59.99250 * 9 7 2 29 29 H 1.08998 * 109.46529 * 299.99081 * 9 7 2 30 30 H 1.08002 * 119.99744 * 359.97115 * 11 10 9 31 31 H 1.08004 * 119.99577 * 179.72816 * 12 11 10 32 32 H 1.09010 * 109.47005 * 215.00024 * 18 17 14 33 33 H 1.09000 * 109.46934 * 334.99122 * 18 17 14 34 34 H 0.96697 * 116.99735 * 179.97438 * 21 19 18 35 35 H 1.09003 * 115.54645 * 334.41704 * 22 17 14 36 36 H 1.09004 * 117.49753 * 359.97438 * 23 22 17 37 37 H 1.09000 * 117.49932 * 145.02231 * 23 22 17 38 38 H 1.09001 * 117.49860 * 214.98106 * 24 22 17 39 39 H 1.09007 * 117.49533 * 359.97305 * 24 22 17 40 40 H 1.08001 * 120.00294 * 179.78842 * 25 13 12 41 41 H 1.07996 * 120.00471 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6795 -4.1700 1.1976 12 6 3.5819 -5.2172 1.1975 13 6 4.0272 -5.7457 0.0004 14 16 5.1721 -7.0851 0.0003 15 8 5.0195 -7.7434 1.2502 16 8 5.0185 -7.7442 -1.2492 17 7 6.6930 -6.4298 -0.0006 18 6 7.3662 -6.1397 1.2678 19 6 8.2556 -7.2976 1.6409 20 8 8.3207 -8.2657 0.9209 21 8 8.9761 -7.2531 2.7725 22 6 7.3652 -6.1403 -1.2696 23 6 8.8381 -5.7305 -1.2115 24 6 7.7660 -4.6890 -1.5418 25 6 3.5776 -5.2207 -1.1967 26 6 2.6789 -4.1703 -1.1967 27 1 -0.4850 0.8400 -0.0004 28 1 0.6245 -2.5572 -0.8895 29 1 0.6241 -2.5567 0.8904 30 1 2.3289 -3.7592 2.1330 31 1 3.9362 -5.6247 2.1328 32 1 7.9693 -5.2379 1.1611 33 1 6.6207 -5.9878 2.0484 34 1 9.5315 -8.0196 2.9697 35 1 7.0432 -6.7416 -2.1199 36 1 9.3069 -5.6758 -0.2289 37 1 9.4851 -6.0616 -2.0238 38 1 7.7081 -4.3356 -2.5713 39 1 7.5291 -3.9496 -0.7768 40 1 3.9281 -5.6314 -2.1321 41 1 2.3279 -3.7600 -2.1319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905985842.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:56 Heat of formation + Delta-G solvation = -132.565845 kcal Electronic energy + Delta-G solvation = -27388.284051 eV Core-core repulsion = 23360.252804 eV Total energy + Delta-G solvation = -4028.031247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.34895 -40.23564 -39.07746 -38.49559 -37.09098 -37.02301 -35.57541 -34.47228 -33.31148 -31.95998 -29.32435 -29.20239 -25.58244 -23.79447 -23.47666 -23.25394 -22.60357 -22.14046 -20.06638 -19.38701 -19.19606 -18.63139 -18.50957 -17.75289 -17.32983 -16.81246 -16.74851 -16.42098 -15.97379 -15.88348 -15.53478 -15.29917 -14.61462 -14.45674 -14.28833 -13.99120 -13.88858 -13.61710 -13.46313 -13.42451 -13.35926 -13.27661 -12.91351 -12.69173 -12.65577 -12.59708 -12.49770 -12.30901 -12.11649 -12.03365 -11.67518 -11.64876 -11.44473 -11.31104 -10.62728 -10.04445 -9.95531 -9.90593 -8.23687 -6.36693 -0.86386 -0.07945 0.40928 1.17614 1.42216 1.42388 1.53609 1.64108 2.09421 2.37247 2.55221 2.76012 2.91413 3.09101 3.09521 3.54363 3.76849 3.90067 3.96449 3.99871 4.06815 4.16650 4.21839 4.25320 4.43782 4.45834 4.49031 4.80145 4.81281 4.91786 4.99836 5.10081 5.15451 5.24947 5.26910 5.28996 5.34310 5.40153 5.61496 5.70041 5.87434 5.92694 6.11664 6.75600 6.97677 7.32575 8.86687 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015228 B = 0.003184 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.261908 B = 8791.466987 C = 9296.088387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.046 3.954 10 C 0.000 4.000 11 C -0.152 4.152 12 C -0.018 4.018 13 C -0.697 4.697 14 S 2.718 3.282 15 O -0.976 6.976 16 O -0.976 6.976 17 N -0.951 5.951 18 C 0.115 3.885 19 C 0.464 3.536 20 O -0.540 6.540 21 O -0.508 6.508 22 C 0.051 3.949 23 C -0.164 4.164 24 C -0.180 4.180 25 C -0.014 4.014 26 C -0.152 4.152 27 H 0.266 0.734 28 H 0.010 0.990 29 H 0.012 0.988 30 H 0.133 0.867 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.145 0.855 34 H 0.429 0.571 35 H 0.139 0.861 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.153 0.847 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.952 -10.759 1.851 22.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.079 0.921 9 C 0.009 3.991 10 C 0.000 4.000 11 C -0.171 4.171 12 C -0.037 4.037 13 C -0.785 4.785 14 S 2.812 3.188 15 O -0.966 6.966 16 O -0.967 6.967 17 N -0.786 5.786 18 C -0.012 4.012 19 C 0.305 3.695 20 O -0.429 6.429 21 O -0.321 6.321 22 C -0.055 4.055 23 C -0.203 4.203 24 C -0.219 4.219 25 C -0.034 4.034 26 C -0.171 4.171 27 H 0.075 0.925 28 H 0.029 0.971 29 H 0.030 0.970 30 H 0.151 0.849 31 H 0.177 0.823 32 H 0.177 0.823 33 H 0.162 0.838 34 H 0.291 0.709 35 H 0.157 0.843 36 H 0.120 0.880 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.125 0.875 40 H 0.171 0.829 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 19.377 -11.501 1.598 22.589 hybrid contribution -0.170 1.037 0.070 1.053 sum 19.207 -10.464 1.667 21.936 Atomic orbital electron populations 1.70070 1.07760 1.28102 1.50923 1.25915 0.95715 1.03155 0.94430 0.85421 0.78698 0.78267 0.78545 1.19780 1.20830 1.18588 1.21291 0.93263 0.90618 1.51481 0.92097 1.18286 0.93026 0.91044 0.96739 1.20824 0.92929 0.92313 0.93955 1.21307 0.99678 0.97835 0.98257 1.21043 0.93116 0.92564 0.96989 1.30616 1.23083 1.24951 0.99888 1.01064 0.72030 0.73192 0.72523 1.93531 1.85982 1.72278 1.44842 1.93508 1.85874 1.72353 1.44923 1.56757 1.31006 1.80421 1.10439 1.21060 0.98212 0.95769 0.86115 1.24239 0.78465 0.88615 0.78142 1.90730 1.64208 1.35457 1.52534 1.84470 1.56581 1.50525 1.40493 1.21798 0.97859 0.99818 0.85989 1.23363 0.90322 1.02259 1.04316 1.23578 1.01938 0.91803 1.04582 1.20978 0.92834 0.92518 0.97032 1.21282 0.99764 0.97811 0.98279 0.92503 0.97138 0.96996 0.84934 0.82288 0.82296 0.83782 0.70945 0.84305 0.88024 0.86629 0.86630 0.87541 0.82939 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.62 13.29 21.45 0.28 -53.34 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.97 41.73 29.54 68.60 2.03 43.76 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.53 -28.15 9.09 25.60 0.23 -27.91 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.05 2.30 5.10 29.10 0.15 2.45 16 10 C 0.00 0.01 5.07 -19.87 -0.10 -0.09 16 11 C -0.15 -5.34 9.70 22.27 0.22 -5.13 16 12 C -0.02 -0.52 9.52 22.27 0.21 -0.31 16 13 C -0.70 -20.11 5.97 22.27 0.13 -19.98 16 14 S 2.72 74.05 5.65 -56.49 -0.32 73.73 16 15 O -0.98 -29.94 16.26 -128.00 -2.08 -32.03 16 16 O -0.98 -31.26 16.06 -128.00 -2.06 -33.32 16 17 N -0.95 -19.57 2.61 -497.40 -1.30 -20.87 16 18 C 0.12 1.77 5.22 85.63 0.45 2.22 16 19 C 0.46 8.51 7.74 71.24 0.55 9.06 16 20 O -0.54 -14.01 17.17 21.98 0.38 -13.63 16 21 O -0.51 -6.12 13.42 -51.39 -0.69 -6.81 16 22 C 0.05 0.93 6.38 44.99 0.29 1.21 16 23 C -0.16 -2.15 9.63 30.62 0.29 -1.85 16 24 C -0.18 -2.49 10.12 30.62 0.31 -2.18 16 25 C -0.01 -0.44 9.52 22.27 0.21 -0.22 16 26 C -0.15 -5.48 9.70 22.27 0.22 -5.26 16 27 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 28 H 0.01 0.55 8.08 -2.39 -0.02 0.53 16 29 H 0.01 0.63 8.09 -2.39 -0.02 0.61 16 30 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 31 H 0.16 3.62 7.62 -2.91 -0.02 3.59 16 32 H 0.16 1.35 6.56 -2.38 -0.02 1.33 16 33 H 0.14 1.80 7.61 -2.39 -0.02 1.78 16 34 H 0.43 1.92 9.10 -74.06 -0.67 1.25 16 35 H 0.14 2.70 7.37 -2.39 -0.02 2.68 16 36 H 0.10 1.16 6.15 -2.38 -0.01 1.14 16 37 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.11 1.43 8.05 -2.38 -0.02 1.41 16 40 H 0.15 3.89 7.62 -2.91 -0.02 3.87 16 41 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -75.46 368.27 0.26 -75.20 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.40 Total: 14.50 kcal Atomic # 6 Polarization: -50.82 SS G_CDS: 3.62 Total: -47.19 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -1.02 Total: -74.21 kcal Atomic # 8 Polarization: -81.34 SS G_CDS: -4.45 Total: -85.79 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 74.05 SS G_CDS: -0.32 Total: 73.73 kcal Total: -75.46 0.26 -75.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905985842.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.367 kcal (2) G-P(sol) polarization free energy of solvation -75.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds