Wall clock time and date at job start Tue Mar 31 2020 22:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47198 * 2 1 4 4 C 1.38395 * 119.84559 * 267.20742 * 3 2 1 5 5 C 1.37925 * 120.14785 * 179.72104 * 4 3 2 6 6 C 1.39646 * 119.84775 * 0.52932 * 5 4 3 7 7 C 1.47727 * 120.14856 * 179.76943 * 6 5 4 8 8 O 1.21473 * 120.00167 * 179.97438 * 7 6 5 9 9 O 1.34711 * 120.00103 * 359.97372 * 7 6 5 10 10 C 1.39605 * 119.70155 * 359.73842 * 6 5 4 11 11 C 1.37966 * 119.84706 * 0.02562 * 10 6 5 12 12 S 1.76204 * 119.92285 * 179.97438 * 11 10 6 13 13 O 1.42096 * 106.40255 * 100.53214 * 12 11 10 14 14 O 1.42110 * 106.40233 * 233.44705 * 12 11 10 15 15 N 1.65593 * 107.21936 * 346.98973 * 12 11 10 16 16 C 1.36930 * 120.00139 * 97.71907 * 15 12 11 17 17 H 1.08008 * 119.99791 * 229.52908 * 16 15 12 18 18 C 1.38804 * 120.00507 * 49.52281 * 16 15 12 19 19 N 1.31626 * 119.99829 * 21.22044 * 18 16 15 20 20 Si 1.86802 * 120.00632 * 201.22442 * 18 16 15 21 21 H 1.48508 * 109.47204 * 59.99610 * 20 18 16 22 22 H 1.48493 * 109.47433 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47144 * 300.00052 * 20 18 16 24 24 C 1.46507 * 120.00076 * 277.71213 * 15 12 11 25 25 C 1.53001 * 117.50003 * 193.49659 * 24 15 12 26 26 C 1.52999 * 117.49600 * 124.87294 * 24 15 12 27 27 H 1.08996 * 109.47364 * 65.80788 * 1 2 3 28 28 H 1.09004 * 109.47204 * 185.81079 * 1 2 3 29 29 H 1.09002 * 109.47113 * 305.80708 * 1 2 3 30 30 H 1.09001 * 109.47183 * 239.99721 * 2 1 3 31 31 H 1.09002 * 109.47161 * 119.99799 * 2 1 3 32 32 H 1.07999 * 119.92695 * 359.97438 * 4 3 2 33 33 H 1.08003 * 120.07640 * 180.27160 * 5 4 3 34 34 H 0.96695 * 116.99912 * 179.97438 * 9 7 6 35 35 H 1.08003 * 120.07595 * 180.02562 * 10 6 5 36 36 H 0.96995 * 119.99928 * 184.93669 * 19 18 16 37 37 H 1.08997 * 115.54766 * 339.20731 * 24 15 12 38 38 H 1.08998 * 117.49865 * 359.97438 * 25 24 15 39 39 H 1.08994 * 117.50051 * 145.02326 * 25 24 15 40 40 H 1.08996 * 117.49560 * 214.97991 * 26 24 15 41 41 H 1.08996 * 117.50015 * 0.02562 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3171 2.0506 -1.1990 5 6 2.7717 3.3528 -1.2065 6 6 2.9551 4.0319 -0.0002 7 6 3.4465 5.4250 -0.0003 8 8 3.6046 6.0134 1.0506 9 8 3.7194 6.0429 -1.1658 10 6 2.6712 3.3886 1.2059 11 6 2.2124 2.0875 1.1987 12 16 1.8541 1.2734 2.7198 13 8 0.4435 1.3287 2.8819 14 8 2.5877 0.0564 2.7061 15 7 2.5009 2.1957 3.9335 16 6 1.7070 3.0706 4.6258 17 1 2.0244 4.0936 4.7651 18 6 0.4943 2.6431 5.1485 19 7 0.2835 1.3608 5.3581 20 14 -0.8387 3.8872 5.5545 21 1 -1.2189 4.6249 4.3230 22 1 -2.0277 3.1804 6.0945 23 1 -0.3292 4.8456 6.5680 24 6 3.9224 2.0755 4.2668 25 6 4.3954 2.7011 5.5805 26 6 4.7633 3.3535 4.2464 27 1 -0.3634 0.4211 -0.9374 28 1 -0.3634 -1.0224 0.1040 29 1 -0.3633 0.6013 0.8334 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.1791 1.5227 -2.1310 33 1 2.9894 3.8446 -2.1431 34 1 4.0382 6.9544 -1.1154 35 1 2.8104 3.9083 2.1423 36 1 -0.5876 1.0548 5.6553 37 1 4.4036 1.1512 3.9472 38 1 3.6491 3.2025 6.1966 39 1 5.1880 2.1883 6.1255 40 1 5.7979 3.2699 3.9137 41 1 4.2588 4.2838 3.9854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906835431.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:22 Heat of formation + Delta-G solvation = -104.514952 kcal Electronic energy + Delta-G solvation = -28973.257920 eV Core-core repulsion = 24946.443051 eV Total energy + Delta-G solvation = -4026.814869 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.29757 -38.75321 -37.25050 -36.04691 -35.69558 -34.58029 -33.80822 -33.21766 -31.09393 -30.52740 -29.66701 -25.08750 -24.88378 -23.02477 -22.17348 -21.60316 -20.81266 -20.43475 -18.98235 -18.39184 -17.54083 -16.52592 -16.04444 -15.63951 -15.56017 -15.46844 -14.99954 -14.91495 -14.39568 -13.92321 -13.72603 -13.64957 -13.51989 -13.26526 -13.04283 -12.47085 -12.31545 -11.86077 -11.74085 -11.60562 -11.45583 -11.42287 -11.28896 -10.98379 -10.95220 -10.75485 -10.60077 -10.52742 -10.43029 -10.34048 -10.19607 -9.95916 -9.64536 -9.39382 -9.00035 -8.70633 -8.68369 -7.59601 -6.54956 -4.25636 0.77943 1.36109 1.81899 2.59040 3.03991 3.23284 3.28755 3.31398 3.79717 4.09991 4.38842 4.69327 4.76583 4.87090 4.91803 5.07584 5.15861 5.27269 5.42500 5.53074 5.61676 5.70656 5.74770 5.77549 5.85335 5.92518 6.03050 6.07898 6.12358 6.24278 6.29864 6.33496 6.36133 6.45472 6.49403 6.58905 6.64956 6.76122 6.98334 7.01976 7.36845 7.45989 7.93081 8.17529 8.84920 9.25115 10.50930 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009858 B = 0.006375 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.591555 B = 4391.047319 C = 5322.920046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.138 4.138 3 C 0.043 3.957 4 C -0.159 4.159 5 C -0.032 4.032 6 C -0.163 4.163 7 C 0.528 3.472 8 O -0.508 6.508 9 O -0.517 6.517 10 C 0.043 3.957 11 C -0.671 4.671 12 S 2.579 3.421 13 O -0.938 6.938 14 O -1.002 7.002 15 N -0.791 5.791 16 C -0.284 4.284 17 H 0.085 0.915 18 C 0.066 3.934 19 N -0.791 5.791 20 Si 0.922 3.078 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.271 1.271 24 C 0.091 3.909 25 C -0.162 4.162 26 C -0.213 4.213 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.411 0.589 35 H 0.154 0.846 36 H 0.282 0.718 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.686 3.646 -9.948 11.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.175 4.175 3 C 0.042 3.958 4 C -0.178 4.178 5 C -0.050 4.050 6 C -0.165 4.165 7 C 0.372 3.628 8 O -0.396 6.396 9 O -0.329 6.329 10 C 0.024 3.976 11 C -0.746 4.746 12 S 2.676 3.324 13 O -0.926 6.926 14 O -0.992 6.992 15 N -0.614 5.614 16 C -0.430 4.430 17 H 0.103 0.897 18 C -0.152 4.152 19 N -0.427 5.427 20 Si 0.747 3.253 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.196 1.196 24 C -0.018 4.018 25 C -0.201 4.201 26 C -0.253 4.253 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.269 0.731 35 H 0.171 0.829 36 H 0.093 0.907 37 H 0.136 0.864 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.065 2.341 -9.810 10.874 hybrid contribution -0.184 1.663 -0.595 1.776 sum 3.881 4.003 -10.405 11.805 Atomic orbital electron populations 1.21937 0.93384 1.03115 1.03423 1.21321 0.97644 0.92542 1.06028 1.19828 0.88976 0.95000 0.91995 1.21085 1.03553 0.95276 0.97842 1.21470 0.92541 0.93866 0.97142 1.19111 1.10491 0.91415 0.95504 1.20917 0.73912 0.87029 0.80897 1.90908 1.49502 1.66494 1.32738 1.84550 1.79217 1.33486 1.35637 1.21110 0.86928 0.91743 0.97820 1.32629 1.11570 1.06397 1.23975 1.09943 0.74913 0.76083 0.71473 1.93419 1.29841 1.85785 1.83600 1.93304 1.74039 1.45179 1.86652 1.52286 1.12655 1.58643 1.37770 1.18983 1.01992 0.92835 1.29147 0.89716 1.25660 0.99931 0.96410 0.93166 1.69824 1.24007 1.15221 1.33673 0.86077 0.79975 0.80220 0.79013 1.19198 1.20562 1.19645 1.21430 0.83130 0.95315 1.01969 1.23066 1.02532 1.03710 0.90831 1.23381 0.99869 0.99220 1.02798 0.92613 0.91705 0.89980 0.89810 0.87591 0.85112 0.84597 0.73115 0.82888 0.90741 0.86385 0.87253 0.89788 0.89803 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.90 37.16 0.37 -2.30 16 2 C -0.14 -2.39 5.55 -27.88 -0.15 -2.54 16 3 C 0.04 0.79 5.14 -104.53 -0.54 0.26 16 4 C -0.16 -2.38 9.67 -39.64 -0.38 -2.77 16 5 C -0.03 -0.46 9.62 -39.17 -0.38 -0.84 16 6 C -0.16 -2.78 5.87 -104.98 -0.62 -3.40 16 7 C 0.53 8.23 8.27 34.61 0.29 8.51 16 8 O -0.51 -9.28 17.13 -19.25 -0.33 -9.61 16 9 O -0.52 -5.76 12.68 -40.52 -0.51 -6.27 16 10 C 0.04 0.85 9.11 -39.17 -0.36 0.49 16 11 C -0.67 -14.13 5.82 -39.64 -0.23 -14.36 16 12 S 2.58 63.14 4.34 -107.50 -0.47 62.67 16 13 O -0.94 -25.23 12.61 -57.17 -0.72 -25.96 16 14 O -1.00 -25.77 14.69 -57.17 -0.84 -26.61 16 15 N -0.79 -18.83 2.04 -53.42 -0.11 -18.94 16 16 C -0.28 -6.97 7.36 -15.07 -0.11 -7.08 16 17 H 0.09 1.97 7.81 -52.48 -0.41 1.56 16 18 C 0.07 1.68 4.04 -17.43 -0.07 1.61 16 19 N -0.79 -21.50 11.63 55.49 0.65 -20.86 16 20 Si 0.92 20.19 29.61 -169.99 -5.03 15.16 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 C 0.09 1.88 6.44 -67.93 -0.44 1.45 16 25 C -0.16 -2.96 9.86 -26.73 -0.26 -3.23 16 26 C -0.21 -3.77 10.18 -26.73 -0.27 -4.04 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.08 1.61 6.42 -51.93 -0.33 1.28 16 30 H 0.08 1.14 8.06 -51.93 -0.42 0.72 16 31 H 0.11 2.11 5.18 -51.93 -0.27 1.85 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.14 1.54 7.61 -52.48 -0.40 1.14 16 34 H 0.41 2.59 9.11 45.56 0.42 3.01 16 35 H 0.15 3.16 6.65 -52.48 -0.35 2.81 16 36 H 0.28 7.29 8.32 -40.82 -0.34 6.95 16 37 H 0.12 2.41 7.45 -51.93 -0.39 2.02 16 38 H 0.11 2.13 7.16 -51.93 -0.37 1.76 16 39 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.10 1.78 7.95 -51.93 -0.41 1.37 16 LS Contribution 355.21 15.07 5.35 5.35 Total: -1.00 -32.19 355.21 -9.36 -41.55 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -4.18 Total: 11.74 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: -3.16 Total: -28.24 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.54 Total: -39.80 kcal Atomic # 8 Polarization: -66.04 SS G_CDS: -2.40 Total: -68.44 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Atomic # 16 Polarization: 63.14 SS G_CDS: -0.47 Total: 62.67 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.19 -9.36 -41.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906835431.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.967 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds