Wall clock time and date at job start Tue Mar 31 2020 22:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47198 * 2 1 4 4 C 1.38395 * 119.84559 * 267.20742 * 3 2 1 5 5 C 1.37925 * 120.14785 * 179.72104 * 4 3 2 6 6 C 1.39646 * 119.84775 * 0.52932 * 5 4 3 7 7 C 1.47727 * 120.14856 * 179.76943 * 6 5 4 8 8 O 1.21473 * 120.00167 * 179.97438 * 7 6 5 9 9 O 1.34711 * 120.00103 * 359.97372 * 7 6 5 10 10 C 1.39605 * 119.70155 * 359.73842 * 6 5 4 11 11 C 1.37966 * 119.84706 * 0.02562 * 10 6 5 12 12 S 1.76204 * 119.92285 * 179.97438 * 11 10 6 13 13 O 1.42096 * 106.40255 * 100.53214 * 12 11 10 14 14 O 1.42110 * 106.40233 * 233.44705 * 12 11 10 15 15 N 1.65593 * 107.21936 * 346.98973 * 12 11 10 16 16 C 1.36930 * 120.00139 * 97.71907 * 15 12 11 17 17 H 1.08008 * 119.99791 * 229.52908 * 16 15 12 18 18 C 1.38804 * 120.00507 * 49.52281 * 16 15 12 19 19 N 1.31626 * 119.99829 * 21.22044 * 18 16 15 20 20 Si 1.86802 * 120.00632 * 201.22442 * 18 16 15 21 21 H 1.48508 * 109.47204 * 59.99610 * 20 18 16 22 22 H 1.48493 * 109.47433 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47144 * 300.00052 * 20 18 16 24 24 C 1.46507 * 120.00076 * 277.71213 * 15 12 11 25 25 C 1.53001 * 117.50003 * 193.49659 * 24 15 12 26 26 C 1.52999 * 117.49600 * 124.87294 * 24 15 12 27 27 H 1.08996 * 109.47364 * 65.80788 * 1 2 3 28 28 H 1.09004 * 109.47204 * 185.81079 * 1 2 3 29 29 H 1.09002 * 109.47113 * 305.80708 * 1 2 3 30 30 H 1.09001 * 109.47183 * 239.99721 * 2 1 3 31 31 H 1.09002 * 109.47161 * 119.99799 * 2 1 3 32 32 H 1.07999 * 119.92695 * 359.97438 * 4 3 2 33 33 H 1.08003 * 120.07640 * 180.27160 * 5 4 3 34 34 H 0.96695 * 116.99912 * 179.97438 * 9 7 6 35 35 H 1.08003 * 120.07595 * 180.02562 * 10 6 5 36 36 H 0.96995 * 119.99928 * 184.93669 * 19 18 16 37 37 H 1.08997 * 115.54766 * 339.20731 * 24 15 12 38 38 H 1.08998 * 117.49865 * 359.97438 * 25 24 15 39 39 H 1.08994 * 117.50051 * 145.02326 * 25 24 15 40 40 H 1.08996 * 117.49560 * 214.97991 * 26 24 15 41 41 H 1.08996 * 117.50015 * 0.02562 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3171 2.0506 -1.1990 5 6 2.7717 3.3528 -1.2065 6 6 2.9551 4.0319 -0.0002 7 6 3.4465 5.4250 -0.0003 8 8 3.6046 6.0134 1.0506 9 8 3.7194 6.0429 -1.1658 10 6 2.6712 3.3886 1.2059 11 6 2.2124 2.0875 1.1987 12 16 1.8541 1.2734 2.7198 13 8 0.4435 1.3287 2.8819 14 8 2.5877 0.0564 2.7061 15 7 2.5009 2.1957 3.9335 16 6 1.7070 3.0706 4.6258 17 1 2.0244 4.0936 4.7651 18 6 0.4943 2.6431 5.1485 19 7 0.2835 1.3608 5.3581 20 14 -0.8387 3.8872 5.5545 21 1 -1.2189 4.6249 4.3230 22 1 -2.0277 3.1804 6.0945 23 1 -0.3292 4.8456 6.5680 24 6 3.9224 2.0755 4.2668 25 6 4.3954 2.7011 5.5805 26 6 4.7633 3.3535 4.2464 27 1 -0.3634 0.4211 -0.9374 28 1 -0.3634 -1.0224 0.1040 29 1 -0.3633 0.6013 0.8334 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.1791 1.5227 -2.1310 33 1 2.9894 3.8446 -2.1431 34 1 4.0382 6.9544 -1.1154 35 1 2.8104 3.9083 2.1423 36 1 -0.5876 1.0548 5.6553 37 1 4.4036 1.1512 3.9472 38 1 3.6491 3.2025 6.1966 39 1 5.1880 2.1883 6.1255 40 1 5.7979 3.2699 3.9137 41 1 4.2588 4.2838 3.9854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906835431.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:21 Heat of formation + Delta-G solvation = -125.989806 kcal Electronic energy + Delta-G solvation = -28974.189139 eV Core-core repulsion = 24946.443051 eV Total energy + Delta-G solvation = -4027.746088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.50676 -40.03185 -38.88793 -37.67709 -37.13000 -36.41104 -35.36057 -34.95299 -32.65549 -32.14432 -30.97162 -26.88131 -26.23583 -24.42425 -23.39107 -23.07841 -22.38893 -21.88515 -20.79327 -19.74580 -18.75614 -18.28741 -17.76058 -17.23558 -16.85548 -16.73705 -16.61221 -16.42169 -16.19952 -15.48130 -15.27553 -15.08168 -14.82036 -14.64522 -14.33845 -14.08440 -13.71395 -13.58955 -13.19499 -13.11053 -13.00397 -12.97910 -12.66761 -12.62004 -12.57820 -12.41650 -12.20111 -12.15274 -12.09125 -11.85474 -11.78406 -11.65069 -11.26499 -11.01062 -10.58170 -10.36142 -10.02761 -9.38070 -8.43763 -6.19267 -0.52453 -0.04856 0.01675 1.35554 1.43933 1.51034 1.55057 1.93977 2.30734 2.48854 2.61538 2.97802 3.13241 3.39640 3.52877 3.66884 3.91031 3.95100 4.07552 4.18518 4.20743 4.24983 4.31929 4.35047 4.37251 4.45876 4.68770 4.73638 4.77604 4.83268 4.91943 4.96380 5.03459 5.05978 5.23552 5.25310 5.31642 5.44958 5.50709 5.52515 5.69105 5.76873 6.26498 6.92472 6.99498 7.38584 8.62330 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009858 B = 0.006375 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.591555 B = 4391.047319 C = 5322.920046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.143 4.143 3 C 0.027 3.973 4 C -0.144 4.144 5 C -0.009 4.009 6 C -0.173 4.173 7 C 0.537 3.463 8 O -0.543 6.543 9 O -0.495 6.495 10 C 0.024 3.976 11 C -0.699 4.699 12 S 2.603 3.397 13 O -0.973 6.973 14 O -1.027 7.027 15 N -0.807 5.807 16 C -0.298 4.298 17 H 0.090 0.910 18 C 0.024 3.976 19 N -0.842 5.842 20 Si 0.968 3.032 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.249 1.249 24 C 0.051 3.949 25 C -0.154 4.154 26 C -0.185 4.185 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.129 0.871 31 H 0.069 0.931 32 H 0.181 0.819 33 H 0.183 0.817 34 H 0.435 0.565 35 H 0.133 0.867 36 H 0.277 0.723 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.973 5.112 -13.710 15.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.180 4.180 3 C 0.026 3.974 4 C -0.162 4.162 5 C -0.027 4.027 6 C -0.174 4.174 7 C 0.383 3.617 8 O -0.435 6.435 9 O -0.310 6.310 10 C 0.004 3.996 11 C -0.780 4.780 12 S 2.704 3.296 13 O -0.962 6.962 14 O -1.017 7.017 15 N -0.631 5.631 16 C -0.441 4.441 17 H 0.108 0.892 18 C -0.189 4.189 19 N -0.479 5.479 20 Si 0.791 3.209 21 H -0.198 1.198 22 H -0.206 1.206 23 H -0.173 1.173 24 C -0.057 4.057 25 C -0.193 4.193 26 C -0.225 4.225 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.147 0.853 31 H 0.088 0.912 32 H 0.198 0.802 33 H 0.200 0.800 34 H 0.297 0.703 35 H 0.151 0.849 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.111 0.889 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.361 3.844 -13.479 15.006 hybrid contribution -0.424 1.236 0.264 1.333 sum 4.937 5.080 -13.215 14.993 Atomic orbital electron populations 1.21951 0.93138 1.03492 1.03367 1.21393 0.97937 0.92238 1.06400 1.20130 0.89331 0.95565 0.92393 1.21582 1.01195 0.95408 0.98055 1.22006 0.89593 0.93447 0.97663 1.19288 1.10277 0.92508 0.95372 1.20638 0.73209 0.86520 0.81350 1.90907 1.51061 1.67183 1.34333 1.84466 1.78417 1.35251 1.32820 1.20976 0.88341 0.91530 0.98712 1.31858 1.15472 1.07419 1.23215 1.07861 0.73903 0.75439 0.72447 1.93384 1.31566 1.86372 1.84846 1.93275 1.74332 1.46469 1.87602 1.52167 1.13783 1.58526 1.38633 1.19123 1.02196 0.92948 1.29804 0.89239 1.26458 1.01864 0.97606 0.92931 1.69917 1.24114 1.16927 1.36923 0.85372 0.77854 0.78671 0.78983 1.19818 1.20576 1.17267 1.21671 0.82362 0.96873 1.04772 1.23121 1.02599 1.03108 0.90481 1.23350 1.00501 0.96952 1.01650 0.89340 0.90375 0.94098 0.85323 0.91245 0.80165 0.80011 0.70256 0.84901 0.91325 0.86807 0.88870 0.86860 0.86749 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.22 9.90 71.98 0.71 -4.50 16 2 C -0.14 -4.73 5.55 29.85 0.17 -4.56 16 3 C 0.03 0.95 5.14 -19.80 -0.10 0.85 16 4 C -0.14 -3.61 9.67 22.23 0.21 -3.39 16 5 C -0.01 -0.22 9.62 22.54 0.22 -0.01 16 6 C -0.17 -5.45 5.87 -20.10 -0.12 -5.57 16 7 C 0.54 15.30 8.27 70.33 0.58 15.88 16 8 O -0.54 -19.26 17.13 19.92 0.34 -18.92 16 9 O -0.50 -8.72 12.68 -56.21 -0.71 -9.44 16 10 C 0.02 0.94 9.11 22.54 0.21 1.14 16 11 C -0.70 -29.80 5.82 22.23 0.13 -29.67 16 12 S 2.60 134.36 4.34 -56.49 -0.25 134.11 16 13 O -0.97 -55.78 12.61 -128.00 -1.61 -57.40 16 14 O -1.03 -55.81 14.69 -128.00 -1.88 -57.69 16 15 N -0.81 -40.52 2.04 -322.94 -0.66 -41.18 16 16 C -0.30 -15.44 7.36 84.03 0.62 -14.82 16 17 H 0.09 4.39 7.81 -2.91 -0.02 4.37 16 18 C 0.02 1.27 4.04 84.86 0.34 1.62 16 19 N -0.84 -48.77 11.63 21.65 0.25 -48.52 16 20 Si 0.97 42.95 29.61 68.60 2.03 44.98 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 24 C 0.05 2.22 6.44 44.99 0.29 2.51 16 25 C -0.15 -5.69 9.86 30.60 0.30 -5.39 16 26 C -0.18 -6.54 10.18 30.60 0.31 -6.23 16 27 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.04 1.65 6.42 -2.39 -0.02 1.63 16 30 H 0.13 3.01 8.06 -2.39 -0.02 2.99 16 31 H 0.07 2.83 5.18 -2.39 -0.01 2.82 16 32 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 33 H 0.18 2.74 7.61 -2.91 -0.02 2.72 16 34 H 0.44 3.50 9.11 -74.06 -0.67 2.83 16 35 H 0.13 5.75 6.65 -2.91 -0.02 5.73 16 36 H 0.28 15.38 8.32 -92.71 -0.77 14.61 16 37 H 0.11 4.88 7.45 -2.39 -0.02 4.86 16 38 H 0.09 3.76 7.16 -2.39 -0.02 3.74 16 39 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 40 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.09 3.22 7.95 -2.39 -0.02 3.20 16 Total: -1.00 -77.00 355.21 1.79 -75.21 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: 0.41 Total: 30.99 kcal Atomic # 6 Polarization: -56.02 SS G_CDS: 3.87 Total: -52.15 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -0.41 Total: -89.70 kcal Atomic # 8 Polarization: -139.59 SS G_CDS: -3.87 Total: -143.45 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 134.36 SS G_CDS: -0.25 Total: 134.11 kcal Total: -77.00 1.79 -75.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906835431.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.783 kcal (2) G-P(sol) polarization free energy of solvation -76.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds