Wall clock time and date at job start Tue Mar 31 2020 22:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99619 * 2 1 4 4 H 1.48499 * 109.46713 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46787 * 299.99430 * 3 2 1 6 6 H 1.48500 * 109.47066 * 59.99710 * 3 2 1 7 7 C 1.37878 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99548 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99841 * 0.02562 * 7 2 1 10 10 C 1.53049 * 109.45634 * 179.97438 * 9 7 2 11 11 C 1.53194 * 109.30917 * 181.37399 * 10 9 7 12 12 N 1.46927 * 108.77662 * 305.36249 * 11 10 9 13 13 S 1.65593 * 120.63297 * 233.59074 * 12 11 10 14 14 O 1.42101 * 106.40224 * 336.45710 * 13 12 11 15 15 O 1.42106 * 106.40407 * 203.53786 * 13 12 11 16 16 C 1.76204 * 107.22042 * 90.00040 * 13 12 11 17 17 C 1.38391 * 119.92062 * 270.25398 * 16 13 12 18 18 C 1.38349 * 120.29919 * 180.29738 * 17 16 13 19 19 C 1.37970 * 120.14996 * 359.70616 * 18 17 16 20 20 C 1.39610 * 119.84452 * 0.02562 * 19 18 17 21 21 C 1.47730 * 120.14297 * 180.02562 * 20 19 18 22 22 O 1.21470 * 119.99365 * 179.97438 * 21 20 19 23 23 O 1.34709 * 120.00367 * 359.97438 * 21 20 19 24 24 C 1.37915 * 119.92484 * 89.99747 * 16 13 12 25 25 C 1.46925 * 118.73393 * 53.86245 * 12 11 10 26 26 C 1.53037 * 109.44938 * 300.05497 * 9 7 2 27 27 H 0.96991 * 120.00182 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46318 * 60.02858 * 9 7 2 29 29 H 1.09000 * 109.49474 * 61.42027 * 10 9 7 30 30 H 1.09001 * 109.52134 * 301.33793 * 10 9 7 31 31 H 1.08999 * 109.58462 * 185.58045 * 11 10 9 32 32 H 1.09000 * 109.70904 * 65.22199 * 11 10 9 33 33 H 1.07994 * 119.85409 * 359.97438 * 17 16 13 34 34 H 1.07996 * 119.92377 * 179.72134 * 18 17 16 35 35 H 1.07996 * 120.07269 * 180.02562 * 19 18 17 36 36 H 0.96698 * 116.99592 * 179.97438 * 23 21 20 37 37 H 1.08002 * 120.08024 * 0.02562 * 24 16 13 38 38 H 1.09000 * 109.58669 * 65.92849 * 25 12 11 39 39 H 1.09007 * 109.58578 * 186.35397 * 25 12 11 40 40 H 1.09000 * 109.49779 * 298.57282 * 26 9 7 41 41 H 1.09001 * 109.49925 * 58.64295 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2460 -3.6622 0.0005 11 6 1.4769 -4.9866 -0.0341 12 7 0.5227 -5.0088 1.0829 13 16 0.5095 -6.2695 2.1564 14 8 1.0836 -7.3791 1.4794 15 8 -0.7912 -6.2961 2.7283 16 6 1.6184 -5.8549 3.4616 17 6 2.9535 -6.2076 3.3712 18 6 3.8298 -5.8915 4.3940 19 6 3.3783 -5.2163 5.5094 20 6 2.0338 -4.8526 5.6044 21 6 1.5434 -4.1290 6.7954 22 8 0.3732 -3.8135 6.8751 23 8 2.3941 -3.8192 7.7929 24 6 1.1548 -5.1751 4.5683 25 6 -0.4236 -3.8940 1.2257 26 6 0.3699 -2.5788 1.2492 27 1 -0.4850 0.8400 -0.0004 28 1 0.6252 -2.5571 -0.8900 29 1 2.8559 -3.6191 0.9028 30 1 2.8888 -3.5916 -0.8769 31 1 2.1754 -5.8174 0.0655 32 1 0.9375 -5.0739 -0.9773 33 1 3.3121 -6.7366 2.5006 34 1 4.8695 -6.1736 4.3192 35 1 4.0635 -4.9698 6.3069 36 1 2.0269 -3.3450 8.5515 37 1 0.1133 -4.8971 4.6359 38 1 -1.1151 -3.8914 0.3831 39 1 -0.9796 -4.0036 2.1569 40 1 0.9973 -2.5458 2.1399 41 1 -0.3223 -1.7368 1.2604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906926158.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:24 Heat of formation + Delta-G solvation = -140.770855 kcal Electronic energy + Delta-G solvation = -28037.637020 eV Core-core repulsion = 24009.249978 eV Total energy + Delta-G solvation = -4028.387043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.62410 -38.88198 -37.77368 -37.17959 -36.31203 -35.73974 -33.47025 -31.88468 -31.48948 -30.91267 -30.10957 -25.79471 -25.09594 -23.55460 -22.55646 -22.34383 -21.62620 -19.70233 -18.91347 -18.21850 -17.98035 -17.31984 -16.32936 -16.26907 -16.10714 -15.91206 -15.84503 -15.00116 -14.59252 -14.35068 -14.00301 -13.64227 -13.54331 -13.29749 -13.10681 -12.89635 -12.81364 -12.51486 -12.19728 -12.07037 -11.98964 -11.82726 -11.80478 -11.43438 -11.10037 -10.99175 -10.90690 -10.76325 -10.63580 -10.42025 -10.10445 -9.75326 -9.63013 -9.40133 -9.23767 -9.02340 -8.45797 -8.29600 -6.04095 -4.10490 0.24908 0.51136 0.76915 2.20861 2.70944 3.05176 3.25349 3.34252 3.36865 3.37944 3.86305 4.28855 4.39048 4.52258 4.61489 4.66722 4.90242 5.10921 5.12669 5.25792 5.34337 5.49200 5.67160 5.75051 5.82393 5.85470 5.89373 6.03770 6.11283 6.21018 6.29037 6.38201 6.38778 6.40822 6.66974 6.84662 7.02513 7.13875 7.37949 7.63459 7.68066 7.91753 8.04864 8.38771 8.93345 9.54777 11.01348 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009635 B = 0.004716 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.302635 B = 5935.693922 C = 7461.143583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.050 3.950 10 C -0.124 4.124 11 C 0.121 3.879 12 N -0.986 5.986 13 S 2.689 3.311 14 O -0.961 6.961 15 O -0.956 6.956 16 C -0.684 4.684 17 C 0.017 3.983 18 C -0.152 4.152 19 C -0.012 4.012 20 C -0.149 4.149 21 C 0.528 3.472 22 O -0.505 6.505 23 O -0.513 6.513 24 C 0.049 3.951 25 C 0.116 3.884 26 C -0.124 4.124 27 H 0.260 0.740 28 H 0.029 0.971 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.416 0.584 37 H 0.155 0.845 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.390 -11.455 10.210 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.032 3.968 10 C -0.163 4.163 11 C -0.004 4.004 12 N -0.826 5.826 13 S 2.778 3.222 14 O -0.951 6.951 15 O -0.946 6.946 16 C -0.768 4.768 17 C -0.002 4.002 18 C -0.171 4.171 19 C -0.030 4.030 20 C -0.151 4.151 21 C 0.372 3.628 22 O -0.393 6.393 23 O -0.325 6.325 24 C 0.030 3.970 25 C -0.008 4.008 26 C -0.163 4.163 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.275 0.725 37 H 0.172 0.828 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.598 -12.212 9.841 16.652 hybrid contribution 0.826 1.880 1.015 2.291 sum 6.424 -10.331 10.856 16.305 Atomic orbital electron populations 1.69842 1.05815 1.26381 1.50813 1.24960 0.94842 0.99013 0.95150 0.86599 0.80122 0.84053 0.77576 1.19908 1.21039 1.21126 1.21227 0.92878 0.90609 1.50304 0.92746 1.18595 0.92593 0.91476 0.94159 1.22021 0.98877 0.94563 1.00858 1.21578 0.90864 0.99342 0.88580 1.57596 1.46259 1.39269 1.39462 1.02115 0.73693 0.73388 0.73006 1.93552 1.79649 1.48985 1.72901 1.93578 1.36085 1.86323 1.78655 1.31351 1.12161 1.15162 1.18156 1.21237 0.90812 0.90368 0.97775 1.21305 1.00729 1.00958 0.94120 1.21745 0.93980 0.90299 0.97006 1.19090 0.95375 1.06174 0.94483 1.20739 0.83408 0.76277 0.82360 1.90936 1.18227 1.50892 1.79254 1.84518 1.44834 1.72005 1.31186 1.21013 1.00219 0.87034 0.88784 1.21879 0.90645 0.86767 1.01502 1.22102 0.99994 0.94837 0.99380 0.92989 0.95282 0.93031 0.92077 0.90705 0.91119 0.83529 0.84020 0.83724 0.72497 0.82789 0.91142 0.90822 0.94395 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.28 11.30 55.43 0.63 -23.65 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -13.23 8.56 -34.44 -0.29 -13.53 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 10 C -0.12 -2.29 5.30 -26.61 -0.14 -2.43 16 11 C 0.12 1.91 6.37 -3.71 -0.02 1.89 16 12 N -0.99 -16.22 3.28 -113.27 -0.37 -16.59 16 13 S 2.69 41.96 5.69 -107.50 -0.61 41.35 16 14 O -0.96 -15.75 15.99 -57.17 -0.91 -16.66 16 15 O -0.96 -17.00 15.98 -57.17 -0.91 -17.92 16 16 C -0.68 -9.55 5.97 -39.64 -0.24 -9.78 16 17 C 0.02 0.20 9.52 -39.48 -0.38 -0.17 16 18 C -0.15 -1.48 10.03 -39.64 -0.40 -1.87 16 19 C -0.01 -0.12 9.62 -39.17 -0.38 -0.50 16 20 C -0.15 -1.92 5.87 -104.98 -0.62 -2.53 16 21 C 0.53 6.70 8.27 34.61 0.29 6.99 16 22 O -0.50 -7.99 17.13 -19.24 -0.33 -8.32 16 23 O -0.51 -4.51 12.68 -40.52 -0.51 -5.02 16 24 C 0.05 0.70 9.07 -39.17 -0.36 0.35 16 25 C 0.12 2.11 6.41 -3.49 -0.02 2.09 16 26 C -0.12 -2.68 5.17 -26.39 -0.14 -2.82 16 27 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.01 7.13 -51.93 -0.37 0.64 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.15 1.44 7.61 -52.49 -0.40 1.04 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.15 1.10 7.61 -52.49 -0.40 0.70 16 36 H 0.42 1.82 9.11 45.56 0.42 2.23 16 37 H 0.15 2.31 7.20 -52.49 -0.38 1.93 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.25 7.12 -51.93 -0.37 0.88 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 2.56 6.03 -51.93 -0.31 2.25 16 LS Contribution 355.21 15.07 5.35 5.35 Total: -1.00 -33.03 355.21 -9.99 -43.02 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.32 Total: 2.65 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -2.97 Total: -19.84 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.25 Total: -40.24 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -2.67 Total: -47.92 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 41.96 SS G_CDS: -0.61 Total: 41.35 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.03 -9.99 -43.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906926158.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.752 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds