Wall clock time and date at job start Tue Mar 31 2020 22:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99619 * 2 1 4 4 H 1.48499 * 109.46713 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46787 * 299.99430 * 3 2 1 6 6 H 1.48500 * 109.47066 * 59.99710 * 3 2 1 7 7 C 1.37878 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99548 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99841 * 0.02562 * 7 2 1 10 10 C 1.53049 * 109.45634 * 179.97438 * 9 7 2 11 11 C 1.53194 * 109.30917 * 181.37399 * 10 9 7 12 12 N 1.46927 * 108.77662 * 305.36249 * 11 10 9 13 13 S 1.65593 * 120.63297 * 233.59074 * 12 11 10 14 14 O 1.42101 * 106.40224 * 336.45710 * 13 12 11 15 15 O 1.42106 * 106.40407 * 203.53786 * 13 12 11 16 16 C 1.76204 * 107.22042 * 90.00040 * 13 12 11 17 17 C 1.38391 * 119.92062 * 270.25398 * 16 13 12 18 18 C 1.38349 * 120.29919 * 180.29738 * 17 16 13 19 19 C 1.37970 * 120.14996 * 359.70616 * 18 17 16 20 20 C 1.39610 * 119.84452 * 0.02562 * 19 18 17 21 21 C 1.47730 * 120.14297 * 180.02562 * 20 19 18 22 22 O 1.21470 * 119.99365 * 179.97438 * 21 20 19 23 23 O 1.34709 * 120.00367 * 359.97438 * 21 20 19 24 24 C 1.37915 * 119.92484 * 89.99747 * 16 13 12 25 25 C 1.46925 * 118.73393 * 53.86245 * 12 11 10 26 26 C 1.53037 * 109.44938 * 300.05497 * 9 7 2 27 27 H 0.96991 * 120.00182 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46318 * 60.02858 * 9 7 2 29 29 H 1.09000 * 109.49474 * 61.42027 * 10 9 7 30 30 H 1.09001 * 109.52134 * 301.33793 * 10 9 7 31 31 H 1.08999 * 109.58462 * 185.58045 * 11 10 9 32 32 H 1.09000 * 109.70904 * 65.22199 * 11 10 9 33 33 H 1.07994 * 119.85409 * 359.97438 * 17 16 13 34 34 H 1.07996 * 119.92377 * 179.72134 * 18 17 16 35 35 H 1.07996 * 120.07269 * 180.02562 * 19 18 17 36 36 H 0.96698 * 116.99592 * 179.97438 * 23 21 20 37 37 H 1.08002 * 120.08024 * 0.02562 * 24 16 13 38 38 H 1.09000 * 109.58669 * 65.92849 * 25 12 11 39 39 H 1.09007 * 109.58578 * 186.35397 * 25 12 11 40 40 H 1.09000 * 109.49779 * 298.57282 * 26 9 7 41 41 H 1.09001 * 109.49925 * 58.64295 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2460 -3.6622 0.0005 11 6 1.4769 -4.9866 -0.0341 12 7 0.5227 -5.0088 1.0829 13 16 0.5095 -6.2695 2.1564 14 8 1.0836 -7.3791 1.4794 15 8 -0.7912 -6.2961 2.7283 16 6 1.6184 -5.8549 3.4616 17 6 2.9535 -6.2076 3.3712 18 6 3.8298 -5.8915 4.3940 19 6 3.3783 -5.2163 5.5094 20 6 2.0338 -4.8526 5.6044 21 6 1.5434 -4.1290 6.7954 22 8 0.3732 -3.8135 6.8751 23 8 2.3941 -3.8192 7.7929 24 6 1.1548 -5.1751 4.5683 25 6 -0.4236 -3.8940 1.2257 26 6 0.3699 -2.5788 1.2492 27 1 -0.4850 0.8400 -0.0004 28 1 0.6252 -2.5571 -0.8900 29 1 2.8559 -3.6191 0.9028 30 1 2.8888 -3.5916 -0.8769 31 1 2.1754 -5.8174 0.0655 32 1 0.9375 -5.0739 -0.9773 33 1 3.3121 -6.7366 2.5006 34 1 4.8695 -6.1736 4.3192 35 1 4.0635 -4.9698 6.3069 36 1 2.0269 -3.3450 8.5515 37 1 0.1133 -4.8971 4.6359 38 1 -1.1151 -3.8914 0.3831 39 1 -0.9796 -4.0036 2.1569 40 1 0.9973 -2.5458 2.1399 41 1 -0.3223 -1.7368 1.2604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906926158.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:24 Heat of formation + Delta-G solvation = -163.520545 kcal Electronic energy + Delta-G solvation = -28038.623521 eV Core-core repulsion = 24009.249978 eV Total energy + Delta-G solvation = -4029.373543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55448 -39.78412 -39.29193 -38.47595 -37.20615 -37.04297 -35.28082 -32.80784 -32.62487 -32.38441 -31.66469 -27.62240 -26.01694 -24.55976 -24.09138 -23.92780 -22.52101 -21.13475 -20.10900 -19.45880 -18.91965 -18.73553 -18.12281 -17.22234 -17.15832 -17.08899 -16.79773 -16.51715 -16.06676 -15.38264 -15.15808 -15.02223 -14.88052 -14.56490 -14.45985 -14.36826 -14.12647 -13.70234 -13.51074 -13.44612 -13.30400 -12.96026 -12.87167 -12.82469 -12.70512 -12.58461 -12.40603 -12.08853 -12.00137 -11.87436 -11.80339 -11.39361 -10.97315 -10.79069 -10.63406 -10.36390 -10.29803 -9.85345 -8.04799 -6.17656 -0.77850 -0.56997 -0.20977 1.28737 1.39900 1.43403 1.52534 1.83688 1.89053 2.41190 2.44978 2.67690 3.15421 3.22375 3.63212 3.75295 3.77210 3.86410 4.02058 4.18238 4.32104 4.43664 4.50437 4.51388 4.64588 4.67974 4.73977 4.82744 4.85296 4.96767 4.98604 5.07879 5.14009 5.33444 5.37514 5.44666 5.56922 5.58532 5.66057 5.72198 6.06066 6.20335 6.43382 6.83880 6.95064 7.50341 8.98719 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009635 B = 0.004716 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.302635 B = 5935.693922 C = 7461.143583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.945 3.055 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.525 4.525 8 H 0.053 0.947 9 C 0.044 3.956 10 C -0.116 4.116 11 C 0.121 3.879 12 N -0.989 5.989 13 S 2.704 3.296 14 O -0.966 6.966 15 O -0.985 6.985 16 C -0.693 4.693 17 C 0.010 3.990 18 C -0.140 4.140 19 C 0.000 4.000 20 C -0.167 4.167 21 C 0.533 3.467 22 O -0.548 6.548 23 O -0.496 6.496 24 C 0.024 3.976 25 C 0.126 3.874 26 C -0.114 4.114 27 H 0.259 0.741 28 H 0.002 0.998 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.168 0.832 34 H 0.186 0.814 35 H 0.178 0.822 36 H 0.436 0.564 37 H 0.133 0.867 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.030 0.970 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.571 -12.552 11.030 19.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.213 1.213 7 C -0.564 4.564 8 H 0.071 0.929 9 C 0.026 3.974 10 C -0.155 4.155 11 C -0.003 4.003 12 N -0.828 5.828 13 S 2.796 3.204 14 O -0.957 6.957 15 O -0.976 6.976 16 C -0.781 4.781 17 C -0.009 4.009 18 C -0.158 4.158 19 C -0.018 4.018 20 C -0.169 4.169 21 C 0.378 3.622 22 O -0.441 6.441 23 O -0.310 6.310 24 C 0.004 3.996 25 C 0.001 3.999 26 C -0.154 4.154 27 H 0.068 0.932 28 H 0.020 0.980 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.125 0.875 32 H 0.094 0.906 33 H 0.185 0.815 34 H 0.203 0.797 35 H 0.195 0.805 36 H 0.299 0.701 37 H 0.151 0.849 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.049 0.951 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.788 -13.319 10.647 19.183 hybrid contribution -0.061 2.215 0.850 2.373 sum 8.726 -11.105 11.497 18.211 Atomic orbital electron populations 1.69985 1.07001 1.26827 1.51786 1.25672 0.95569 1.02057 0.95253 0.85703 0.79333 0.80507 0.77276 1.19046 1.20935 1.21254 1.21627 0.93050 0.92105 1.49584 0.92869 1.18593 0.93208 0.92399 0.93218 1.21879 0.98056 0.94070 1.01450 1.21664 0.91086 0.98895 0.88700 1.57547 1.46224 1.38575 1.40411 1.01458 0.73315 0.72818 0.72822 1.93535 1.79641 1.49052 1.73431 1.93539 1.38349 1.86622 1.79050 1.30932 1.13050 1.16848 1.17237 1.21645 0.89867 0.90090 0.99270 1.21814 1.02336 0.99059 0.92635 1.22170 0.92922 0.88744 0.97968 1.19251 0.96564 1.06849 0.94223 1.20810 0.82979 0.75507 0.82865 1.90922 1.20101 1.52804 1.80224 1.84462 1.43684 1.71697 1.31178 1.20955 0.99922 0.88512 0.90167 1.21604 0.90544 0.85838 1.01921 1.21863 0.99328 0.95581 0.98603 0.93219 0.98032 0.92613 0.91226 0.87473 0.90585 0.81461 0.79708 0.80496 0.70150 0.84880 0.91219 0.90142 0.95073 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.50 11.30 21.45 0.24 -51.26 16 2 C 0.01 0.69 5.30 84.65 0.45 1.14 16 3 Si 0.95 42.61 29.54 68.60 2.03 44.64 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.53 -27.41 8.56 25.60 0.22 -27.19 16 8 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 9 C 0.04 2.06 2.06 -11.51 -0.02 2.03 16 10 C -0.12 -4.13 5.30 30.68 0.16 -3.96 16 11 C 0.12 3.62 6.37 86.36 0.55 4.17 16 12 N -0.99 -32.06 3.28 -512.27 -1.68 -33.74 16 13 S 2.70 82.76 5.69 -56.49 -0.32 82.44 16 14 O -0.97 -29.92 15.99 -128.00 -2.05 -31.97 16 15 O -0.99 -35.76 15.98 -128.00 -2.05 -37.81 16 16 C -0.69 -18.56 5.97 22.23 0.13 -18.43 16 17 C 0.01 0.21 9.52 22.33 0.21 0.42 16 18 C -0.14 -2.07 10.03 22.23 0.22 -1.85 16 19 C 0.00 0.00 9.62 22.54 0.22 0.22 16 20 C -0.17 -4.07 5.87 -20.10 -0.12 -4.19 16 21 C 0.53 13.13 8.27 70.33 0.58 13.71 16 22 O -0.55 -17.85 17.13 19.93 0.34 -17.51 16 23 O -0.50 -7.54 12.68 -56.19 -0.71 -8.25 16 24 C 0.02 0.70 9.07 22.53 0.20 0.90 16 25 C 0.13 4.70 6.41 86.51 0.55 5.25 16 26 C -0.11 -5.12 5.17 30.82 0.16 -4.96 16 27 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 28 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.11 2.55 7.13 -2.39 -0.02 2.53 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.17 2.60 7.61 -2.91 -0.02 2.57 16 34 H 0.19 1.16 8.06 -2.91 -0.02 1.14 16 35 H 0.18 1.78 7.61 -2.91 -0.02 1.75 16 36 H 0.44 2.84 9.11 -74.06 -0.67 2.17 16 37 H 0.13 4.30 7.20 -2.91 -0.02 4.28 16 38 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.08 2.87 7.12 -2.38 -0.02 2.85 16 40 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.07 3.65 6.03 -2.39 -0.01 3.63 16 Total: -1.00 -73.63 355.21 -0.28 -73.90 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.40 Total: 12.30 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 3.52 Total: -32.74 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -1.44 Total: -85.01 kcal Atomic # 8 Polarization: -91.07 SS G_CDS: -4.46 Total: -95.53 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: 82.76 SS G_CDS: -0.32 Total: 82.44 kcal Total: -73.63 -0.28 -73.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906926158.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.616 kcal (2) G-P(sol) polarization free energy of solvation -73.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds