Wall clock time and date at job start Tue Mar 31 2020 22:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99661 * 2 1 4 4 H 1.48507 * 109.46853 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47359 * 299.99745 * 3 2 1 6 6 H 1.48498 * 109.46986 * 60.00402 * 3 2 1 7 7 C 1.37876 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00272 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99613 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.52712 * 299.91611 * 9 7 2 11 11 C 1.53046 * 109.49957 * 60.00044 * 9 7 2 12 12 C 1.53043 * 109.53700 * 181.31733 * 11 9 7 13 13 C 1.53187 * 109.31215 * 298.63008 * 12 11 9 14 14 N 1.46931 * 108.77309 * 54.63979 * 13 12 11 15 15 S 1.65604 * 120.62885 * 126.41385 * 14 13 12 16 16 O 1.42107 * 106.39685 * 203.53643 * 15 14 13 17 17 O 1.42094 * 106.40073 * 336.45795 * 15 14 13 18 18 C 1.76200 * 107.21769 * 90.00154 * 15 14 13 19 19 C 1.38371 * 119.84295 * 269.71952 * 18 15 14 20 20 C 1.37946 * 120.14862 * 179.76787 * 19 18 15 21 21 C 1.39630 * 119.84345 * 0.50971 * 20 19 18 22 22 C 1.47736 * 120.14622 * 179.76997 * 21 20 19 23 23 O 1.21468 * 119.99682 * 179.97438 * 22 21 20 24 24 O 1.34703 * 119.99901 * 359.97438 * 22 21 20 25 25 C 1.39623 * 119.70306 * 359.74647 * 21 20 19 26 26 C 1.37944 * 119.84862 * 359.97438 * 25 21 20 27 27 C 1.46923 * 118.73730 * 306.38501 * 14 13 12 28 28 H 0.96993 * 119.99855 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.45610 * 301.33535 * 11 9 7 30 30 H 1.08998 * 109.46061 * 61.30898 * 11 9 7 31 31 H 1.09000 * 109.49738 * 58.58741 * 12 11 9 32 32 H 1.09003 * 109.49316 * 178.68106 * 12 11 9 33 33 H 1.09001 * 109.58881 * 174.42505 * 13 12 11 34 34 H 1.09004 * 109.59068 * 294.85220 * 13 12 11 35 35 H 1.08003 * 119.92795 * 0.02562 * 19 18 15 36 36 H 1.08001 * 120.07774 * 180.23971 * 20 19 18 37 37 H 0.96705 * 117.00023 * 179.97438 * 24 22 21 38 38 H 1.08002 * 120.07439 * 179.97438 * 25 21 20 39 39 H 1.08000 * 119.92319 * 180.02562 * 26 25 21 40 40 H 1.08996 * 109.59375 * 293.82604 * 27 14 13 41 41 H 1.09006 * 109.58686 * 173.39604 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 1 0.6250 -2.5590 0.8884 11 6 0.3716 -2.5800 -1.2515 12 6 -0.4188 -3.8905 -1.2371 13 6 0.5572 -5.0710 -1.2556 14 7 1.5000 -4.9227 -0.1385 15 16 1.7179 -6.1512 0.9504 16 8 2.2065 -5.5495 2.1415 17 8 0.5373 -6.9407 0.9061 18 6 3.0197 -7.1676 0.3363 19 6 2.7264 -8.2363 -0.4922 20 6 3.7410 -9.0333 -0.9804 21 6 5.0653 -8.7658 -0.6281 22 6 6.1567 -9.6181 -1.1430 23 8 7.3079 -9.3827 -0.8351 24 8 5.8751 -10.6562 -1.9539 25 6 5.3536 -7.6890 0.2127 26 6 4.3298 -6.8967 0.6891 27 6 2.2462 -3.6639 -0.0063 28 1 -0.4849 0.8400 0.0004 29 1 -0.3210 -1.7384 -1.2632 30 1 1.0005 -2.5452 -2.1411 31 1 -1.0293 -3.9372 -0.3353 32 1 -1.0625 -3.9367 -2.1156 33 1 0.0044 -6.0040 -1.1458 34 1 1.1052 -5.0774 -2.1979 35 1 1.7012 -8.4445 -0.7607 36 1 3.5111 -9.8648 -1.6302 37 1 6.6223 -11.1849 -2.2658 38 1 6.3758 -7.4770 0.4894 39 1 4.5515 -6.0632 1.3391 40 1 2.9318 -3.5555 -0.8466 41 1 2.8077 -3.6684 0.9280 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907028010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:48 Heat of formation + Delta-G solvation = -162.317195 kcal Electronic energy + Delta-G solvation = -27335.806996 eV Core-core repulsion = 23306.485634 eV Total energy + Delta-G solvation = -4029.321362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.57984 -39.80631 -39.28107 -38.46044 -37.21928 -37.00539 -35.18777 -32.93667 -32.68647 -32.29694 -31.83810 -27.01986 -26.35368 -25.15523 -24.06508 -23.31843 -22.57881 -21.16877 -20.10727 -19.33753 -18.96433 -18.79647 -18.17484 -17.97576 -17.11897 -16.80055 -16.56750 -16.11872 -15.87022 -15.35984 -15.18988 -15.07708 -14.81306 -14.70521 -14.42981 -14.39650 -14.06793 -13.94086 -13.80157 -13.29809 -13.24276 -12.91761 -12.78935 -12.69486 -12.66652 -12.48541 -12.43681 -12.21461 -11.83170 -11.79617 -11.76124 -11.54996 -11.05875 -10.74588 -10.69733 -10.39374 -10.25353 -9.76920 -8.04856 -6.19338 -1.02229 -0.66839 0.11196 1.15015 1.43447 1.46307 1.56649 1.84172 1.91915 2.41074 2.46777 2.70524 3.13191 3.22470 3.54776 3.73881 3.85433 3.94064 4.09435 4.21747 4.31337 4.38999 4.41335 4.59795 4.66407 4.76371 4.83030 4.84793 4.87062 4.90738 4.99840 5.02774 5.12317 5.31640 5.39365 5.43860 5.52865 5.56477 5.68743 5.75578 6.02534 6.21145 6.41263 6.83357 6.93179 7.48788 8.99177 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.003109 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.170687 B = 9003.289907 C = 9788.753410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.287 1.287 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.035 3.965 10 H -0.011 1.011 11 C -0.105 4.105 12 C -0.128 4.128 13 C 0.119 3.881 14 N -0.992 5.992 15 S 2.694 3.306 16 O -0.985 6.985 17 O -0.973 6.973 18 C -0.644 4.644 19 C -0.036 4.036 20 C -0.071 4.071 21 C -0.087 4.087 22 C 0.535 3.465 23 O -0.537 6.537 24 O -0.496 6.496 25 C -0.080 4.080 26 C -0.040 4.040 27 C 0.134 3.866 28 H 0.259 0.741 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.169 0.831 36 H 0.179 0.821 37 H 0.438 0.562 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.076 0.924 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.665 -21.308 -6.849 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.213 1.213 7 C -0.570 4.570 8 H 0.079 0.921 9 C 0.015 3.985 10 H 0.007 0.993 11 C -0.143 4.143 12 C -0.167 4.167 13 C -0.005 4.005 14 N -0.832 5.832 15 S 2.788 3.212 16 O -0.976 6.976 17 O -0.963 6.963 18 C -0.733 4.733 19 C -0.055 4.055 20 C -0.090 4.090 21 C -0.089 4.089 22 C 0.380 3.620 23 O -0.429 6.429 24 O -0.311 6.311 25 C -0.099 4.099 26 C -0.060 4.060 27 C 0.010 3.990 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.123 0.877 34 H 0.109 0.891 35 H 0.186 0.814 36 H 0.196 0.804 37 H 0.301 0.699 38 H 0.172 0.828 39 H 0.170 0.830 40 H 0.094 0.906 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.045 -21.061 -5.872 22.971 hybrid contribution 1.239 0.891 -0.213 1.541 sum 8.284 -20.170 -6.085 22.638 Atomic orbital electron populations 1.70036 1.07207 1.26947 1.51389 1.25711 0.95612 1.02327 0.94917 0.85580 0.79310 0.79868 0.77307 1.18814 1.20668 1.21290 1.21539 0.93409 0.91652 1.50393 0.92084 1.18923 0.93497 0.91948 0.94154 0.99291 1.21403 0.98814 0.96495 0.97578 1.21896 0.97889 0.95484 1.01475 1.21676 0.90341 0.99418 0.89047 1.57521 1.53688 1.27119 1.44831 1.01653 0.73798 0.72647 0.73125 1.93546 1.82232 1.76804 1.44978 1.93521 1.45796 1.70295 1.86708 1.31201 1.14662 1.14040 1.13358 1.21283 1.01961 0.90829 0.91460 1.21874 0.90086 0.99426 0.97597 1.19554 0.93131 0.96241 0.99960 1.20717 0.87170 0.78910 0.75252 1.90917 1.23343 1.71004 1.57588 1.84497 1.45951 1.40488 1.60122 1.21506 1.00909 0.92788 0.94694 1.21065 0.90444 0.98555 0.95896 1.21565 0.94146 0.81756 1.01567 0.93161 0.92304 0.94008 0.94198 0.89652 0.87747 0.89086 0.81352 0.80365 0.69890 0.82792 0.82985 0.90616 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.28 11.31 21.45 0.24 -52.03 16 2 C 0.01 0.71 5.30 84.65 0.45 1.16 16 3 Si 0.95 42.87 29.54 68.60 2.03 44.89 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.53 -28.22 8.56 25.60 0.22 -28.00 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.03 1.69 2.25 -11.46 -0.03 1.67 16 10 H -0.01 -0.63 8.14 -2.39 -0.02 -0.64 16 11 C -0.10 -4.63 4.96 30.62 0.15 -4.48 16 12 C -0.13 -4.46 6.08 30.67 0.19 -4.27 16 13 C 0.12 3.34 6.48 86.36 0.56 3.90 16 14 N -0.99 -32.07 3.29 -513.06 -1.69 -33.76 16 15 S 2.69 82.90 5.73 -56.49 -0.32 82.58 16 16 O -0.99 -37.21 15.86 -128.00 -2.03 -39.24 16 17 O -0.97 -31.66 15.85 -128.00 -2.03 -33.69 16 18 C -0.64 -15.18 5.98 22.33 0.13 -15.05 16 19 C -0.04 -0.66 9.50 22.23 0.21 -0.45 16 20 C -0.07 -1.06 9.62 22.54 0.22 -0.84 16 21 C -0.09 -1.56 5.87 -20.10 -0.12 -1.68 16 22 C 0.53 8.91 8.27 70.33 0.58 9.49 16 23 O -0.54 -12.26 17.13 19.94 0.34 -11.92 16 24 O -0.50 -4.48 12.68 -56.13 -0.71 -5.19 16 25 C -0.08 -1.61 9.60 22.53 0.22 -1.39 16 26 C -0.04 -0.92 9.50 22.23 0.21 -0.71 16 27 C 0.13 5.16 5.70 86.36 0.49 5.65 16 28 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 29 H 0.06 3.03 6.04 -2.39 -0.01 3.02 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.10 2.44 6.92 -2.39 -0.02 2.42 16 34 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.17 2.38 7.60 -2.91 -0.02 2.36 16 36 H 0.18 1.52 7.61 -2.91 -0.02 1.50 16 37 H 0.44 0.04 9.11 -74.05 -0.67 -0.63 16 38 H 0.15 2.81 7.65 -2.91 -0.02 2.79 16 39 H 0.15 3.38 7.60 -2.91 -0.02 3.35 16 40 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.07 2.93 6.92 -2.38 -0.02 2.91 16 Total: -1.00 -73.74 354.73 -0.29 -74.03 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.40 Total: 9.33 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 3.48 Total: -35.01 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -1.45 Total: -85.79 kcal Atomic # 8 Polarization: -85.61 SS G_CDS: -4.43 Total: -90.04 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 82.90 SS G_CDS: -0.32 Total: 82.58 kcal Total: -73.74 -0.29 -74.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907028010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.288 kcal (2) G-P(sol) polarization free energy of solvation -73.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds