Wall clock time and date at job start Tue Mar 31 2020 22:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99705 * 2 1 4 4 H 1.48498 * 109.46803 * 274.98915 * 3 2 1 5 5 H 1.48496 * 109.46795 * 34.99162 * 3 2 1 6 6 H 1.48497 * 109.46841 * 154.99110 * 3 2 1 7 7 C 1.37871 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99962 * 189.57621 * 7 2 1 9 9 C 1.50703 * 120.00448 * 9.58236 * 7 2 1 10 10 H 1.09000 * 109.49551 * 305.38156 * 9 7 2 11 11 C 1.53037 * 109.49707 * 65.44237 * 9 7 2 12 12 C 1.53040 * 109.53781 * 181.34912 * 11 9 7 13 13 C 1.53186 * 109.31604 * 298.63659 * 12 11 9 14 14 N 1.46925 * 108.77430 * 54.63142 * 13 12 11 15 15 S 1.65601 * 120.62970 * 126.37154 * 14 13 12 16 16 O 1.42103 * 106.40008 * 336.45798 * 15 14 13 17 17 O 1.42104 * 106.40170 * 203.54406 * 15 14 13 18 18 C 1.76194 * 107.21970 * 89.99948 * 15 14 13 19 19 C 1.38386 * 119.92459 * 90.00300 * 18 15 14 20 20 C 1.38344 * 120.30674 * 179.72301 * 19 18 15 21 21 C 1.37967 * 120.14873 * 0.02562 * 20 19 18 22 22 C 1.39610 * 119.84684 * 359.97438 * 21 20 19 23 23 C 1.47723 * 120.15094 * 180.02562 * 22 21 20 24 24 O 1.21467 * 120.00108 * 179.97438 * 23 22 21 25 25 O 1.34713 * 119.99902 * 359.97438 * 23 22 21 26 26 C 1.37919 * 119.92714 * 269.72210 * 18 15 14 27 27 C 1.46924 * 118.74268 * 306.64398 * 14 13 12 28 28 H 0.96995 * 119.99935 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46262 * 61.33167 * 11 9 7 30 30 H 1.09000 * 109.46208 * 301.37467 * 11 9 7 31 31 H 1.09002 * 109.49908 * 178.68200 * 12 11 9 32 32 H 1.08994 * 109.49500 * 58.59162 * 12 11 9 33 33 H 1.09003 * 109.58571 * 294.84780 * 13 12 11 34 34 H 1.08998 * 109.59054 * 174.42103 * 13 12 11 35 35 H 1.08007 * 119.84636 * 359.74684 * 19 18 15 36 36 H 1.07998 * 119.92851 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.07816 * 180.02562 * 21 20 19 38 38 H 0.96699 * 116.99744 * 180.02562 * 25 23 22 39 39 H 1.08006 * 120.07695 * 0.25685 * 26 18 15 40 40 H 1.08997 * 109.59163 * 173.14204 * 27 14 13 41 41 H 1.08993 * 109.58651 * 293.57191 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5032 2.6199 0.8029 6 1 3.5954 1.4121 0.5919 7 6 2.0045 -1.1940 0.0005 8 1 3.0732 -1.2005 0.1561 9 6 1.2668 -2.4902 -0.2161 10 1 0.4564 -2.5729 0.5080 11 6 0.6904 -2.5190 -1.6335 12 6 -0.0875 -3.8202 -1.8433 13 6 0.8637 -5.0104 -1.6839 14 7 1.5318 -4.9104 -0.3791 15 16 1.4943 -6.1768 0.6873 16 8 0.3505 -6.9503 0.3515 17 8 1.7049 -5.6208 1.9780 18 6 2.8964 -7.1877 0.3460 19 6 4.0957 -6.9459 0.9928 20 6 5.2000 -7.7383 0.7352 21 6 5.1124 -8.7758 -0.1700 22 6 3.9056 -9.0254 -0.8261 23 6 3.8041 -10.1349 -1.7962 24 8 2.7526 -10.3499 -2.3652 25 8 4.8776 -10.9081 -2.0499 26 6 2.7947 -8.2219 -0.5607 27 6 2.2287 -3.6633 -0.0360 28 1 -0.4850 0.8400 0.0004 29 1 1.5032 -2.4612 -2.3574 30 1 0.0211 -1.6697 -1.7707 31 1 -0.5174 -3.8297 -2.8449 32 1 -0.8852 -3.8904 -1.1039 33 1 1.6094 -4.9912 -2.4786 34 1 0.2971 -5.9402 -1.7339 35 1 4.1698 -6.1350 1.7024 36 1 6.1328 -7.5444 1.2437 37 1 5.9751 -9.3940 -0.3700 38 1 4.7627 -11.6215 -2.6925 39 1 1.8580 -8.4099 -1.0646 40 1 2.5624 -3.7044 1.0008 41 1 3.0879 -3.5320 -0.6936 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907028507.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:31 Heat of formation + Delta-G solvation = -141.449475 kcal Electronic energy + Delta-G solvation = -27536.531194 eV Core-core repulsion = 23508.114724 eV Total energy + Delta-G solvation = -4028.416470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.77135 -38.99913 -37.78151 -37.10503 -36.46876 -35.64312 -33.30502 -31.98694 -31.59801 -31.20598 -30.16276 -25.24065 -25.09150 -23.84993 -23.46217 -21.81100 -21.65651 -19.65279 -19.24400 -18.19476 -17.85035 -17.35416 -16.43243 -16.26764 -16.06996 -16.00114 -15.92324 -15.05092 -14.64134 -14.41197 -13.93343 -13.76721 -13.61063 -13.40718 -13.22027 -12.86068 -12.72072 -12.58439 -12.19720 -12.08233 -11.96309 -11.86432 -11.77783 -11.43196 -11.10387 -11.01654 -10.86623 -10.84483 -10.76457 -10.27693 -10.04486 -9.85282 -9.78209 -9.52132 -9.44024 -8.88511 -8.42579 -8.25568 -6.05385 -4.08245 0.14837 0.47987 0.68083 2.07376 2.56255 3.04144 3.28872 3.34315 3.37056 3.39272 3.91788 4.25423 4.40909 4.43582 4.53600 4.57949 4.81233 5.06501 5.18369 5.23142 5.27876 5.39315 5.63168 5.65489 5.70450 5.76417 5.80406 5.96306 6.05553 6.17405 6.28734 6.29964 6.41081 6.56555 6.58069 6.81867 6.94987 7.15698 7.35117 7.47823 7.67837 7.90001 7.97669 8.35308 8.95255 9.55303 11.03619 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018284 B = 0.003153 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.037522 B = 8877.666583 C = 9198.689588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.040 0.960 11 C -0.104 4.104 12 C -0.131 4.131 13 C 0.121 3.879 14 N -0.987 5.987 15 S 2.685 3.315 16 O -0.958 6.958 17 O -0.948 6.948 18 C -0.686 4.686 19 C 0.018 3.982 20 C -0.152 4.152 21 C -0.014 4.014 22 C -0.153 4.153 23 C 0.529 3.471 24 O -0.507 6.507 25 O -0.513 6.513 26 C 0.044 3.956 27 C 0.123 3.877 28 H 0.261 0.739 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.416 0.584 39 H 0.154 0.846 40 H 0.081 0.919 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.479 -18.308 -3.042 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.076 0.924 9 C 0.019 3.981 10 H 0.058 0.942 11 C -0.142 4.142 12 C -0.171 4.171 13 C -0.004 4.004 14 N -0.828 5.828 15 S 2.773 3.227 16 O -0.949 6.949 17 O -0.938 6.938 18 C -0.769 4.769 19 C -0.001 4.001 20 C -0.171 4.171 21 C -0.033 4.033 22 C -0.155 4.155 23 C 0.373 3.627 24 O -0.396 6.396 25 O -0.325 6.325 26 C 0.024 3.976 27 C 0.000 4.000 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.169 0.831 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.275 0.725 39 H 0.172 0.828 40 H 0.100 0.900 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.502 -18.125 -2.269 20.591 hybrid contribution 1.092 0.223 -0.889 1.426 sum 10.594 -17.902 -3.158 21.041 Atomic orbital electron populations 1.69975 1.05947 1.26631 1.49632 1.24935 0.94757 0.99056 0.94868 0.86628 0.80035 0.83695 0.77919 1.20764 1.21331 1.19844 1.21034 0.94136 0.90585 1.50006 0.92392 1.18885 0.94529 0.90825 0.93817 0.94193 1.21527 0.98617 0.95020 0.99028 1.21943 0.98209 0.96196 1.00706 1.21479 0.95444 0.99990 0.83473 1.57629 1.67012 1.27198 1.30926 1.02321 0.73717 0.72820 0.73804 1.93559 1.46016 1.70882 1.84392 1.93591 1.86130 1.77381 1.36704 1.31547 1.20287 1.15106 1.10001 1.21349 0.90316 0.95824 0.92593 1.21353 0.99624 0.96336 0.99773 1.21752 0.96314 0.94370 0.90816 1.19100 0.96369 0.98216 1.01829 1.20755 0.80892 0.80912 0.80152 1.90930 1.29780 1.69622 1.49223 1.84528 1.40601 1.45252 1.62137 1.21029 0.97955 0.88547 0.90020 1.21825 0.95773 0.82463 0.99971 0.92929 0.94284 0.90557 0.92324 0.91959 0.91956 0.90106 0.83142 0.83897 0.83716 0.72468 0.82805 0.90048 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.73 12.17 55.43 0.67 -24.06 16 2 C 0.07 1.77 5.19 -17.82 -0.09 1.68 16 3 Si 0.89 20.58 29.55 -169.99 -5.02 15.55 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.52 -13.49 8.48 -34.44 -0.29 -13.78 16 8 H 0.06 1.46 7.77 -52.49 -0.41 1.05 16 9 C 0.04 0.94 2.10 -91.87 -0.19 0.74 16 10 H 0.04 1.07 8.09 -51.93 -0.42 0.65 16 11 C -0.10 -2.25 5.02 -26.69 -0.13 -2.38 16 12 C -0.13 -2.36 6.08 -26.61 -0.16 -2.53 16 13 C 0.12 1.92 6.48 -3.71 -0.02 1.89 16 14 N -0.99 -16.83 3.30 -113.77 -0.37 -17.20 16 15 S 2.68 43.85 5.73 -107.50 -0.62 43.24 16 16 O -0.96 -17.28 15.86 -57.17 -0.91 -18.18 16 17 O -0.95 -17.75 15.86 -57.17 -0.91 -18.65 16 18 C -0.69 -9.04 5.97 -39.64 -0.24 -9.27 16 19 C 0.02 0.20 9.52 -39.49 -0.38 -0.17 16 20 C -0.15 -1.32 10.03 -39.64 -0.40 -1.72 16 21 C -0.01 -0.12 9.62 -39.17 -0.38 -0.50 16 22 C -0.15 -1.68 5.87 -104.98 -0.62 -2.30 16 23 C 0.53 5.59 8.27 34.61 0.29 5.88 16 24 O -0.51 -6.89 17.13 -19.24 -0.33 -7.22 16 25 O -0.51 -3.50 12.68 -40.53 -0.51 -4.01 16 26 C 0.04 0.56 9.06 -39.17 -0.36 0.20 16 27 C 0.12 2.37 5.68 -3.93 -0.02 2.35 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.87 6.88 -51.93 -0.36 1.52 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.16 6.92 -51.93 -0.36 0.80 16 35 H 0.15 1.54 7.61 -52.48 -0.40 1.14 16 36 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.15 0.87 7.61 -52.49 -0.40 0.47 16 38 H 0.42 1.00 9.11 45.56 0.42 1.41 16 39 H 0.15 1.99 7.20 -52.48 -0.38 1.61 16 40 H 0.08 1.55 6.91 -51.93 -0.36 1.19 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -33.72 356.12 -9.96 -43.68 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -4.34 Total: 1.40 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -2.99 Total: -19.90 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.30 Total: -41.26 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -2.66 Total: -48.06 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 43.85 SS G_CDS: -0.62 Total: 43.24 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.72 -9.96 -43.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907028507.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.773 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds