Wall clock time and date at job start Tue Mar 31 2020 22:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99705 * 2 1 4 4 H 1.48498 * 109.46803 * 274.98915 * 3 2 1 5 5 H 1.48496 * 109.46795 * 34.99162 * 3 2 1 6 6 H 1.48497 * 109.46841 * 154.99110 * 3 2 1 7 7 C 1.37871 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99962 * 189.57621 * 7 2 1 9 9 C 1.50703 * 120.00448 * 9.58236 * 7 2 1 10 10 H 1.09000 * 109.49551 * 305.38156 * 9 7 2 11 11 C 1.53037 * 109.49707 * 65.44237 * 9 7 2 12 12 C 1.53040 * 109.53781 * 181.34912 * 11 9 7 13 13 C 1.53186 * 109.31604 * 298.63659 * 12 11 9 14 14 N 1.46925 * 108.77430 * 54.63142 * 13 12 11 15 15 S 1.65601 * 120.62970 * 126.37154 * 14 13 12 16 16 O 1.42103 * 106.40008 * 336.45798 * 15 14 13 17 17 O 1.42104 * 106.40170 * 203.54406 * 15 14 13 18 18 C 1.76194 * 107.21970 * 89.99948 * 15 14 13 19 19 C 1.38386 * 119.92459 * 90.00300 * 18 15 14 20 20 C 1.38344 * 120.30674 * 179.72301 * 19 18 15 21 21 C 1.37967 * 120.14873 * 0.02562 * 20 19 18 22 22 C 1.39610 * 119.84684 * 359.97438 * 21 20 19 23 23 C 1.47723 * 120.15094 * 180.02562 * 22 21 20 24 24 O 1.21467 * 120.00108 * 179.97438 * 23 22 21 25 25 O 1.34713 * 119.99902 * 359.97438 * 23 22 21 26 26 C 1.37919 * 119.92714 * 269.72210 * 18 15 14 27 27 C 1.46924 * 118.74268 * 306.64398 * 14 13 12 28 28 H 0.96995 * 119.99935 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46262 * 61.33167 * 11 9 7 30 30 H 1.09000 * 109.46208 * 301.37467 * 11 9 7 31 31 H 1.09002 * 109.49908 * 178.68200 * 12 11 9 32 32 H 1.08994 * 109.49500 * 58.59162 * 12 11 9 33 33 H 1.09003 * 109.58571 * 294.84780 * 13 12 11 34 34 H 1.08998 * 109.59054 * 174.42103 * 13 12 11 35 35 H 1.08007 * 119.84636 * 359.74684 * 19 18 15 36 36 H 1.07998 * 119.92851 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.07816 * 180.02562 * 21 20 19 38 38 H 0.96699 * 116.99744 * 180.02562 * 25 23 22 39 39 H 1.08006 * 120.07695 * 0.25685 * 26 18 15 40 40 H 1.08997 * 109.59163 * 173.14204 * 27 14 13 41 41 H 1.08993 * 109.58651 * 293.57191 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5032 2.6199 0.8029 6 1 3.5954 1.4121 0.5919 7 6 2.0045 -1.1940 0.0005 8 1 3.0732 -1.2005 0.1561 9 6 1.2668 -2.4902 -0.2161 10 1 0.4564 -2.5729 0.5080 11 6 0.6904 -2.5190 -1.6335 12 6 -0.0875 -3.8202 -1.8433 13 6 0.8637 -5.0104 -1.6839 14 7 1.5318 -4.9104 -0.3791 15 16 1.4943 -6.1768 0.6873 16 8 0.3505 -6.9503 0.3515 17 8 1.7049 -5.6208 1.9780 18 6 2.8964 -7.1877 0.3460 19 6 4.0957 -6.9459 0.9928 20 6 5.2000 -7.7383 0.7352 21 6 5.1124 -8.7758 -0.1700 22 6 3.9056 -9.0254 -0.8261 23 6 3.8041 -10.1349 -1.7962 24 8 2.7526 -10.3499 -2.3652 25 8 4.8776 -10.9081 -2.0499 26 6 2.7947 -8.2219 -0.5607 27 6 2.2287 -3.6633 -0.0360 28 1 -0.4850 0.8400 0.0004 29 1 1.5032 -2.4612 -2.3574 30 1 0.0211 -1.6697 -1.7707 31 1 -0.5174 -3.8297 -2.8449 32 1 -0.8852 -3.8904 -1.1039 33 1 1.6094 -4.9912 -2.4786 34 1 0.2971 -5.9402 -1.7339 35 1 4.1698 -6.1350 1.7024 36 1 6.1328 -7.5444 1.2437 37 1 5.9751 -9.3940 -0.3700 38 1 4.7627 -11.6215 -2.6925 39 1 1.8580 -8.4099 -1.0646 40 1 2.5624 -3.7044 1.0008 41 1 3.0879 -3.5320 -0.6936 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907028507.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:30 Heat of formation + Delta-G solvation = -165.307677 kcal Electronic energy + Delta-G solvation = -27537.565763 eV Core-core repulsion = 23508.114724 eV Total energy + Delta-G solvation = -4029.451039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.54205 -39.79142 -39.32968 -38.48416 -37.17319 -37.03142 -35.16113 -32.89436 -32.74076 -32.40020 -31.88810 -27.00879 -25.99962 -25.28492 -24.42243 -23.36635 -22.50437 -21.21206 -20.29414 -19.19703 -18.87057 -18.81102 -18.06890 -17.21478 -17.13821 -17.13048 -16.76896 -16.53158 -16.05992 -15.37685 -15.22851 -15.10391 -14.88791 -14.51596 -14.44677 -14.43907 -14.04568 -13.85134 -13.45162 -13.34328 -13.29754 -12.93451 -12.85706 -12.81407 -12.67066 -12.66717 -12.53604 -12.02613 -11.91628 -11.79115 -11.78140 -11.54216 -11.11352 -10.74522 -10.66859 -10.40407 -10.32256 -9.79238 -8.09122 -6.18332 -0.80414 -0.59021 -0.23523 1.29380 1.45268 1.46595 1.56467 1.85820 1.92011 2.42364 2.47453 2.69053 3.15191 3.21958 3.63176 3.74910 3.81865 3.86128 4.00891 4.16694 4.23309 4.34362 4.49281 4.55863 4.60660 4.65167 4.78964 4.84593 4.86923 4.97111 4.97926 5.07178 5.07970 5.25299 5.35438 5.47753 5.51371 5.55868 5.67228 5.70161 5.99781 6.06634 6.37839 6.87279 6.94618 7.48744 8.99761 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018284 B = 0.003153 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.037522 B = 8877.666583 C = 9198.689588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.262 1.262 7 C -0.531 4.531 8 H 0.065 0.935 9 C 0.032 3.968 10 H -0.008 1.008 11 C -0.096 4.096 12 C -0.129 4.129 13 C 0.120 3.880 14 N -0.994 5.994 15 S 2.693 3.307 16 O -0.984 6.984 17 O -0.981 6.981 18 C -0.687 4.687 19 C 0.006 3.994 20 C -0.139 4.139 21 C 0.004 3.996 22 C -0.163 4.163 23 C 0.536 3.464 24 O -0.546 6.546 25 O -0.497 6.497 26 C 0.028 3.972 27 C 0.135 3.865 28 H 0.259 0.741 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.039 0.961 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.156 0.844 36 H 0.183 0.817 37 H 0.181 0.819 38 H 0.437 0.563 39 H 0.142 0.858 40 H 0.078 0.922 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.216 -20.018 -3.913 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.187 1.187 7 C -0.570 4.570 8 H 0.083 0.917 9 C 0.012 3.988 10 H 0.010 0.990 11 C -0.134 4.134 12 C -0.168 4.168 13 C -0.005 4.005 14 N -0.833 5.833 15 S 2.788 3.212 16 O -0.974 6.974 17 O -0.971 6.971 18 C -0.776 4.776 19 C -0.014 4.014 20 C -0.157 4.157 21 C -0.014 4.014 22 C -0.165 4.165 23 C 0.382 3.618 24 O -0.438 6.438 25 O -0.311 6.311 26 C 0.008 3.992 27 C 0.011 3.989 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.173 0.827 36 H 0.200 0.800 37 H 0.199 0.801 38 H 0.300 0.700 39 H 0.160 0.840 40 H 0.096 0.904 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.221 -19.826 -3.145 24.037 hybrid contribution 0.030 0.612 -0.604 0.860 sum 13.251 -19.215 -3.749 23.640 Atomic orbital electron populations 1.70125 1.07538 1.27184 1.51076 1.25746 0.95461 1.02535 0.94808 0.85617 0.79029 0.79453 0.77993 1.20133 1.21748 1.18655 1.21481 0.94638 0.91768 1.49129 0.91676 1.18861 0.94017 0.92217 0.93703 0.98973 1.21338 0.98472 0.95606 0.98022 1.21893 0.97832 0.95428 1.01621 1.21615 0.95819 0.99300 0.83728 1.57531 1.67431 1.26997 1.31319 1.01587 0.74149 0.72597 0.72890 1.93519 1.48272 1.71103 1.84514 1.93542 1.86840 1.78237 1.38503 1.30756 1.19427 1.15281 1.12107 1.21608 0.90387 0.96755 0.92618 1.21783 0.99989 0.94940 0.98972 1.22187 0.96209 0.93933 0.89038 1.19237 0.96684 0.98214 1.02374 1.20680 0.80886 0.80838 0.79423 1.90925 1.31410 1.70730 1.50718 1.84468 1.38613 1.45438 1.62553 1.20985 0.98546 0.89241 0.90400 1.21507 0.95159 0.81787 1.00469 0.93189 0.93136 0.94226 0.89564 0.94227 0.89046 0.88664 0.82652 0.79952 0.80139 0.70022 0.84003 0.90397 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.66 12.17 21.45 0.26 -53.40 16 2 C 0.01 0.73 5.19 84.65 0.44 1.17 16 3 Si 0.95 42.68 29.55 68.60 2.03 44.71 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.53 -28.14 8.48 25.60 0.22 -27.92 16 8 H 0.07 3.27 7.77 -2.91 -0.02 3.24 16 9 C 0.03 1.57 2.10 -11.60 -0.02 1.55 16 10 H -0.01 -0.46 8.09 -2.39 -0.02 -0.48 16 11 C -0.10 -4.28 5.02 30.62 0.15 -4.12 16 12 C -0.13 -4.69 6.08 30.67 0.19 -4.50 16 13 C 0.12 3.70 6.48 86.36 0.56 4.26 16 14 N -0.99 -34.01 3.30 -513.87 -1.69 -35.70 16 15 S 2.69 89.64 5.73 -56.49 -0.32 89.31 16 16 O -0.98 -36.57 15.86 -128.00 -2.03 -38.60 16 17 O -0.98 -37.92 15.86 -128.00 -2.03 -39.95 16 18 C -0.69 -17.39 5.97 22.23 0.13 -17.26 16 19 C 0.01 0.11 9.52 22.33 0.21 0.32 16 20 C -0.14 -1.77 10.03 22.23 0.22 -1.55 16 21 C 0.00 0.05 9.62 22.54 0.22 0.27 16 22 C -0.16 -3.13 5.87 -20.10 -0.12 -3.25 16 23 C 0.54 10.01 8.27 70.33 0.58 10.59 16 24 O -0.55 -14.26 17.13 19.94 0.34 -13.91 16 25 O -0.50 -4.86 12.68 -56.23 -0.71 -5.57 16 26 C 0.03 0.68 9.06 22.53 0.20 0.88 16 27 C 0.14 5.23 5.68 86.22 0.49 5.71 16 28 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.04 2.03 6.88 -2.39 -0.02 2.01 16 31 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.10 2.69 6.92 -2.39 -0.02 2.67 16 35 H 0.16 2.90 7.61 -2.91 -0.02 2.88 16 36 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 37 H 0.18 1.02 7.61 -2.91 -0.02 1.00 16 38 H 0.44 0.51 9.11 -74.06 -0.67 -0.16 16 39 H 0.14 3.72 7.20 -2.91 -0.02 3.70 16 40 H 0.08 3.03 6.91 -2.39 -0.02 3.01 16 41 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -77.12 356.12 -0.29 -77.40 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.40 Total: 9.55 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: 3.47 Total: -33.84 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -1.43 Total: -89.10 kcal Atomic # 8 Polarization: -93.60 SS G_CDS: -4.43 Total: -98.03 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: 89.64 SS G_CDS: -0.32 Total: 89.31 kcal Total: -77.12 -0.29 -77.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907028507.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.904 kcal (2) G-P(sol) polarization free energy of solvation -77.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds