Wall clock time and date at job start Tue Mar 31 2020 22:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00297 * 2 1 4 4 H 1.48501 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47043 * 300.00215 * 3 2 1 6 6 H 1.48502 * 109.47111 * 60.00358 * 3 2 1 7 7 C 1.37880 * 119.99249 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99546 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00694 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.52375 * 60.07675 * 9 7 2 11 11 C 1.53042 * 109.49706 * 299.99902 * 9 7 2 12 12 C 1.53035 * 109.54021 * 178.67875 * 11 9 7 13 13 C 1.53196 * 109.30995 * 61.36728 * 12 11 9 14 14 N 1.46929 * 108.77486 * 305.36045 * 13 12 11 15 15 S 1.65594 * 120.63261 * 233.63338 * 14 13 12 16 16 O 1.42100 * 106.39852 * 203.54414 * 15 14 13 17 17 O 1.42101 * 106.40037 * 336.45905 * 15 14 13 18 18 C 1.76193 * 107.22143 * 89.99987 * 15 14 13 19 19 C 1.38386 * 119.92460 * 269.72959 * 18 15 14 20 20 C 1.38352 * 120.30134 * 179.72377 * 19 18 15 21 21 C 1.37967 * 120.15096 * 0.54429 * 20 19 18 22 22 C 1.39612 * 119.84589 * 359.73284 * 21 20 19 23 23 C 1.47726 * 120.15187 * 179.97438 * 22 21 20 24 24 O 1.21469 * 120.00156 * 180.02562 * 23 22 21 25 25 O 1.34707 * 119.99589 * 0.02562 * 23 22 21 26 26 C 1.37928 * 119.92466 * 89.99772 * 18 15 14 27 27 C 1.46924 * 118.73409 * 53.61317 * 14 13 12 28 28 H 0.97001 * 119.99715 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46156 * 58.65870 * 11 9 7 30 30 H 1.08999 * 109.45763 * 298.70582 * 11 9 7 31 31 H 1.09001 * 109.49969 * 301.41757 * 12 11 9 32 32 H 1.09001 * 109.50249 * 181.31372 * 12 11 9 33 33 H 1.08998 * 109.58804 * 65.15483 * 13 12 11 34 34 H 1.09003 * 109.58394 * 185.58059 * 13 12 11 35 35 H 1.07992 * 119.85060 * 359.97438 * 19 18 15 36 36 H 1.07993 * 119.92745 * 180.25314 * 20 19 18 37 37 H 1.08000 * 120.08068 * 179.70628 * 21 20 19 38 38 H 0.96704 * 116.99840 * 179.97438 * 25 23 22 39 39 H 1.08005 * 120.07505 * 359.97438 * 26 18 15 40 40 H 1.08999 * 109.58511 * 186.60055 * 27 14 13 41 41 H 1.09005 * 109.70744 * 66.24599 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6253 -2.5586 -0.8901 11 6 0.3704 -2.5806 1.2496 12 6 -0.4201 -3.8909 1.2341 13 6 0.5559 -5.0716 1.2528 14 7 1.4994 -4.9229 0.1364 15 16 1.7172 -6.1504 -0.9535 16 8 3.0040 -5.9565 -1.5244 17 8 1.3331 -7.3476 -0.2915 18 6 0.5539 -5.9058 -2.2540 19 6 -0.7017 -6.4821 -2.1745 20 6 -1.6233 -6.2904 -3.1885 21 6 -1.2916 -5.5316 -4.2920 22 6 -0.0246 -4.9520 -4.3814 23 6 0.3379 -4.1387 -5.5601 24 8 1.4411 -3.6361 -5.6352 25 8 -0.5552 -3.9546 -6.5517 26 6 0.8987 -5.1449 -3.3515 27 6 2.2458 -3.6641 0.0052 28 1 -0.4850 0.8401 0.0004 29 1 -0.3221 -1.7389 1.2613 30 1 0.9987 -2.5460 2.1396 31 1 -1.0299 -3.9373 0.3318 32 1 -1.0644 -3.9376 2.1121 33 1 1.1031 -5.0785 2.1954 34 1 0.0030 -6.0044 1.1420 35 1 -0.9649 -7.0809 -1.3152 36 1 -2.6028 -6.7397 -3.1183 37 1 -2.0102 -5.3867 -5.0851 38 1 -0.2725 -3.4145 -7.3024 39 1 1.8803 -4.6989 -3.4141 40 1 2.8080 -3.6683 -0.9286 41 1 2.9325 -3.5548 0.8447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907028508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:33 Heat of formation + Delta-G solvation = -164.161287 kcal Electronic energy + Delta-G solvation = -28223.275792 eV Core-core repulsion = 24193.874465 eV Total energy + Delta-G solvation = -4029.401328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.55939 -39.78669 -39.31230 -38.47329 -37.21368 -37.04277 -35.21264 -32.81186 -32.71806 -32.38286 -31.87080 -27.04180 -26.02204 -25.24029 -24.42377 -23.33739 -22.52122 -21.18344 -20.11304 -19.49695 -18.93351 -18.66569 -18.07178 -17.23153 -17.14843 -17.12577 -16.80555 -16.58918 -16.03940 -15.37410 -15.20548 -15.13850 -14.84103 -14.56826 -14.41205 -14.35330 -14.11983 -13.82543 -13.44463 -13.34233 -13.28559 -12.92329 -12.87569 -12.80197 -12.71427 -12.67973 -12.53427 -12.08575 -11.86987 -11.83651 -11.79399 -11.54332 -11.09823 -10.75890 -10.62246 -10.41358 -10.29902 -9.78949 -8.08264 -6.21299 -0.77043 -0.56934 -0.20853 1.28429 1.38932 1.42381 1.52586 1.84295 1.88257 2.40373 2.44174 2.67723 3.16424 3.19040 3.63112 3.75335 3.80539 3.86080 4.02088 4.18500 4.29079 4.37933 4.50530 4.58226 4.62379 4.63957 4.80245 4.85483 4.90234 4.96100 4.98679 5.06664 5.11396 5.30954 5.39086 5.43945 5.53588 5.58875 5.66501 5.73847 6.00279 6.18812 6.40452 6.83066 6.89518 7.46198 8.95176 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009168 B = 0.005309 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.493811 B = 5273.015036 C = 6984.154006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.019 3.981 3 Si 0.946 3.054 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.535 4.535 8 H 0.053 0.947 9 C 0.039 3.961 10 H -0.002 1.002 11 C -0.105 4.105 12 C -0.126 4.126 13 C 0.120 3.880 14 N -0.991 5.991 15 S 2.702 3.298 16 O -0.988 6.988 17 O -0.964 6.964 18 C -0.694 4.694 19 C 0.011 3.989 20 C -0.139 4.139 21 C -0.001 4.001 22 C -0.167 4.167 23 C 0.531 3.469 24 O -0.549 6.549 25 O -0.495 6.495 26 C 0.023 3.977 27 C 0.135 3.865 28 H 0.260 0.740 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.172 0.828 36 H 0.189 0.811 37 H 0.178 0.822 38 H 0.436 0.564 39 H 0.127 0.873 40 H 0.066 0.934 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.400 -13.790 -5.978 17.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.180 4.180 3 Si 0.772 3.228 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.574 4.574 8 H 0.071 0.929 9 C 0.019 3.981 10 H 0.016 0.984 11 C -0.143 4.143 12 C -0.165 4.165 13 C -0.005 4.005 14 N -0.829 5.829 15 S 2.794 3.206 16 O -0.979 6.979 17 O -0.954 6.954 18 C -0.782 4.782 19 C -0.008 4.008 20 C -0.158 4.158 21 C -0.019 4.019 22 C -0.170 4.170 23 C 0.377 3.623 24 O -0.441 6.441 25 O -0.309 6.309 26 C 0.003 3.997 27 C 0.010 3.990 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.126 0.874 35 H 0.189 0.811 36 H 0.206 0.794 37 H 0.196 0.804 38 H 0.298 0.702 39 H 0.145 0.855 40 H 0.084 0.916 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.756 -14.458 -5.611 17.340 hybrid contribution 0.514 2.285 -1.092 2.584 sum -7.243 -12.174 -6.703 15.671 Atomic orbital electron populations 1.70003 1.06839 1.26859 1.51252 1.25596 0.95634 1.01881 0.94871 0.85687 0.79244 0.80332 0.77487 1.19408 1.21166 1.20323 1.21527 0.93196 0.92031 1.50603 0.92887 1.18904 0.93258 0.91354 0.94574 0.98354 1.21391 0.98770 0.96906 0.97252 1.21912 0.97673 0.94913 1.01998 1.21695 0.90467 0.99349 0.88949 1.57584 1.54762 1.30624 1.39976 1.01485 0.73460 0.72764 0.72858 1.93537 1.38997 1.86250 1.79092 1.93529 1.84296 1.43622 1.73962 1.30961 1.16098 1.13876 1.17257 1.21660 0.89264 0.90796 0.99112 1.21834 1.01752 0.99451 0.92717 1.22178 0.93098 0.88602 0.97978 1.19261 0.97976 1.05187 0.94526 1.20852 0.81544 0.77244 0.82700 1.90927 1.24630 1.48867 1.79668 1.84453 1.45278 1.69196 1.32003 1.20942 0.98653 0.89732 0.90357 1.21525 0.93989 0.82174 1.01318 0.93125 0.92018 0.94722 0.92895 0.89681 0.89850 0.87359 0.81099 0.79392 0.80423 0.70200 0.85487 0.91587 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.01 11.31 21.45 0.24 -50.76 16 2 C 0.02 1.05 5.30 84.65 0.45 1.50 16 3 Si 0.95 43.54 29.54 68.60 2.03 45.57 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.53 -28.94 8.56 25.60 0.22 -28.72 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 9 C 0.04 1.88 2.25 -11.46 -0.03 1.85 16 10 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 11 C -0.10 -4.57 4.96 30.62 0.15 -4.41 16 12 C -0.13 -4.08 6.08 30.67 0.19 -3.89 16 13 C 0.12 3.40 6.38 86.36 0.55 3.95 16 14 N -0.99 -33.62 3.29 -513.06 -1.69 -35.31 16 15 S 2.70 88.29 5.69 -56.49 -0.32 87.97 16 16 O -0.99 -38.96 15.99 -128.00 -2.05 -41.00 16 17 O -0.96 -30.53 15.98 -128.00 -2.05 -32.58 16 18 C -0.69 -20.36 5.97 22.23 0.13 -20.23 16 19 C 0.01 0.23 9.52 22.33 0.21 0.44 16 20 C -0.14 -2.25 10.03 22.23 0.22 -2.03 16 21 C 0.00 -0.01 9.62 22.54 0.22 0.21 16 22 C -0.17 -4.65 5.87 -20.10 -0.12 -4.77 16 23 C 0.53 15.01 8.27 70.33 0.58 15.60 16 24 O -0.55 -20.16 17.13 19.94 0.34 -19.82 16 25 O -0.50 -8.97 12.68 -56.16 -0.71 -9.68 16 26 C 0.02 0.75 9.07 22.54 0.20 0.96 16 27 C 0.13 5.54 5.60 86.36 0.48 6.02 16 28 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 29 H 0.06 3.10 6.04 -2.38 -0.01 3.09 16 30 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.11 2.41 7.12 -2.39 -0.02 2.40 16 35 H 0.17 2.72 7.60 -2.91 -0.02 2.70 16 36 H 0.19 1.31 8.06 -2.91 -0.02 1.28 16 37 H 0.18 2.13 7.61 -2.91 -0.02 2.11 16 38 H 0.44 4.08 9.11 -74.05 -0.67 3.40 16 39 H 0.13 4.76 7.20 -2.91 -0.02 4.74 16 40 H 0.07 2.81 7.13 -2.39 -0.02 2.80 16 41 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 Total: -1.00 -75.65 355.19 -0.33 -75.98 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.40 Total: 13.16 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 3.47 Total: -33.53 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -1.45 Total: -86.07 kcal Atomic # 8 Polarization: -98.63 SS G_CDS: -4.46 Total: -103.09 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 88.29 SS G_CDS: -0.32 Total: 87.97 kcal Total: -75.65 -0.33 -75.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907028508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.177 kcal (2) G-P(sol) polarization free energy of solvation -75.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds