Wall clock time and date at job start Tue Mar 31 2020 22:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 108.88960 * 2 1 4 4 C 1.34779 * 120.00100 * 300.69891 * 3 2 1 5 5 O 1.21588 * 119.99914 * 0.02562 * 4 3 2 6 6 C 1.47536 * 120.00002 * 180.02562 * 4 3 2 7 7 C 1.39663 * 120.19677 * 0.23384 * 6 4 3 8 8 C 1.37831 * 119.92146 * 180.21029 * 7 6 4 9 9 C 1.38575 * 120.32058 * 359.81305 * 8 7 6 10 10 C 1.38030 * 120.39979 * 359.97401 * 9 8 7 11 11 C 1.38830 * 120.07381 * 359.97438 * 10 9 8 12 12 O 1.35521 * 120.16034 * 179.97438 * 11 10 9 13 13 C 1.34814 * 117.00180 * 5.58629 * 12 11 10 14 14 H 1.07996 * 119.99859 * 354.92557 * 13 12 11 15 15 C 1.38692 * 120.00062 * 174.93156 * 13 12 11 16 16 N 1.31524 * 120.00134 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 120.00002 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.46778 * 90.00468 * 17 15 13 19 19 H 1.48504 * 109.47130 * 209.99880 * 17 15 13 20 20 H 1.48491 * 109.46985 * 330.00340 * 17 15 13 21 21 C 1.52377 * 108.92854 * 118.66935 * 2 1 3 22 22 C 1.54208 * 112.29660 * 120.60786 * 21 2 1 23 23 S 1.83817 * 102.86163 * 25.04390 * 22 21 2 24 24 O 1.42105 * 109.81136 * 77.68412 * 23 22 21 25 25 O 1.42102 * 109.81547 * 211.99881 * 23 22 21 26 26 C 1.54202 * 108.92435 * 241.33350 * 2 1 3 27 27 H 1.08998 * 109.46898 * 59.29798 * 1 2 3 28 28 H 1.08996 * 109.47038 * 179.29910 * 1 2 3 29 29 H 1.09002 * 109.47102 * 299.29764 * 1 2 3 30 30 H 0.97000 * 120.00133 * 120.70392 * 3 2 1 31 31 H 1.08003 * 120.04531 * 359.97438 * 7 6 4 32 32 H 1.07998 * 119.84222 * 179.78910 * 8 7 6 33 33 H 1.07992 * 119.79982 * 180.02562 * 9 8 7 34 34 H 1.08002 * 119.96267 * 180.02562 * 10 9 8 35 35 H 0.97000 * 120.00036 * 180.02562 * 16 15 13 36 36 H 1.09003 * 108.92947 * 241.35150 * 21 2 1 37 37 H 1.09003 * 108.92683 * 0.02562 * 21 2 1 38 38 H 1.08997 * 110.73366 * 143.39136 * 22 21 2 39 39 H 1.08999 * 110.73308 * 266.52394 * 22 21 2 40 40 H 1.09003 * 110.73988 * 332.68569 * 26 2 1 41 41 H 1.09001 * 110.73934 * 96.00448 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0044 1.3861 0.0000 4 6 1.6587 2.2167 -1.0036 5 8 0.9529 1.8156 -1.9088 6 6 2.1369 3.6124 -1.0039 7 6 2.9518 4.0760 0.0312 8 6 3.3917 5.3822 0.0276 9 6 3.0325 6.2384 -1.0011 10 6 2.2313 5.7930 -2.0330 11 6 1.7798 4.4803 -2.0464 12 8 0.9926 4.0413 -3.0584 13 6 0.7783 4.8933 -4.0810 14 1 1.1577 5.9031 -4.0310 15 6 0.0705 4.4729 -5.1972 16 7 -0.1390 5.3043 -6.1946 17 14 -0.5853 2.7259 -5.2840 18 1 -1.9532 2.6816 -4.7075 19 1 -0.6309 2.2841 -6.7011 20 1 0.3066 1.8235 -4.5125 21 6 2.0244 -0.6915 1.2647 22 6 2.9013 -1.9214 0.9543 23 16 3.5610 -1.5419 -0.7189 24 8 4.6192 -0.5989 -0.6169 25 8 3.7446 -2.7471 -1.4491 26 6 2.0302 -0.6997 -1.2799 27 1 -0.3633 0.5247 -0.8836 28 1 -0.3633 -1.0276 -0.0126 29 1 -0.3633 0.5029 0.8962 30 1 2.5672 1.7061 0.7223 31 1 3.2339 3.4128 0.8357 32 1 4.0190 5.7403 0.8305 33 1 3.3823 7.2601 -0.9958 34 1 1.9560 6.4663 -2.8314 35 1 -0.6343 5.0104 -6.9751 36 1 2.6067 0.0189 1.8515 37 1 1.1637 -1.0128 1.8513 38 1 3.7117 -2.0099 1.6778 39 1 2.2996 -2.8301 0.9379 40 1 1.2986 -1.4263 -1.6336 41 1 2.2562 0.0312 -2.0562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919981894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:34 Heat of formation + Delta-G solvation = -87.712995 kcal Electronic energy + Delta-G solvation = -28211.658465 eV Core-core repulsion = 24185.572183 eV Total energy + Delta-G solvation = -4026.086281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.33922 -39.03002 -37.24326 -36.83917 -36.49046 -36.10388 -32.90047 -32.48364 -31.15950 -29.73953 -29.22494 -28.02190 -25.41638 -24.90098 -23.35399 -21.59693 -20.60749 -19.76497 -19.03415 -18.06929 -17.91816 -16.91813 -16.51123 -16.35115 -16.23551 -15.64517 -14.89883 -14.74382 -14.47299 -14.37824 -14.21099 -13.90146 -13.79949 -13.51039 -13.12491 -13.05556 -12.65737 -12.43071 -12.38782 -12.30546 -12.22072 -12.15926 -12.13951 -11.98147 -11.44809 -11.32317 -11.18868 -10.90541 -10.85207 -10.77543 -10.40097 -10.07570 -9.63725 -9.06336 -8.97839 -8.91629 -8.42084 -7.51733 -6.50401 -4.15670 -0.12664 1.51892 2.16128 2.27841 3.17159 3.28981 3.31975 3.35730 3.48423 3.60893 3.78979 4.07660 4.12713 4.30467 4.39416 4.49740 4.50138 4.68504 4.80056 5.02193 5.06099 5.22540 5.24458 5.33453 5.36894 5.44546 5.57302 5.62773 5.64241 5.87010 5.93490 6.00532 6.31174 6.34190 6.50721 6.63158 6.79572 6.97019 7.11885 7.44655 7.62828 7.80221 7.91466 8.72129 8.84857 9.47055 10.54732 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011830 B = 0.004549 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.272638 B = 6153.472108 C = 7500.478376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.187 3.813 3 N -0.737 5.737 4 C 0.565 3.435 5 O -0.509 6.509 6 C -0.229 4.229 7 C -0.039 4.039 8 C -0.220 4.220 9 C -0.049 4.049 10 C -0.227 4.227 11 C 0.202 3.798 12 O -0.166 6.166 13 C -0.396 4.396 14 H 0.108 0.892 15 C 0.072 3.928 16 N -0.869 5.869 17 Si 0.898 3.102 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.235 1.235 21 C -0.121 4.121 22 C -0.581 4.581 23 S 2.369 3.631 24 O -0.923 6.923 25 O -0.941 6.941 26 C -0.581 4.581 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.399 0.601 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.138 0.862 35 H 0.282 0.718 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.145 0.855 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.227 -11.080 17.547 21.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.099 3.901 3 N -0.394 5.394 4 C 0.356 3.644 5 O -0.385 6.385 6 C -0.234 4.234 7 C -0.058 4.058 8 C -0.239 4.239 9 C -0.068 4.068 10 C -0.246 4.246 11 C 0.144 3.856 12 O -0.066 6.066 13 C -0.471 4.471 14 H 0.125 0.875 15 C -0.134 4.134 16 N -0.504 5.504 17 Si 0.723 3.277 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.158 1.158 21 C -0.160 4.160 22 C -0.710 4.710 23 S 2.552 3.448 24 O -0.920 6.920 25 O -0.938 6.938 26 C -0.712 4.712 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.236 0.764 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.156 0.844 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.163 0.837 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.381 -11.753 16.119 20.424 hybrid contribution -0.771 -0.046 0.554 0.950 sum 3.610 -11.799 16.673 20.742 Atomic orbital electron populations 1.22373 0.92200 1.02640 1.04773 1.20154 0.97033 0.82557 0.90392 1.46308 1.55405 1.10027 1.27656 1.18195 0.79849 0.85223 0.81180 1.90818 1.36146 1.76530 1.35023 1.18795 1.11288 0.93270 1.00036 1.20775 0.94107 0.95521 0.95351 1.20550 1.07592 0.94418 1.01358 1.20980 0.94453 0.98614 0.92747 1.21290 1.04925 0.96265 1.02115 1.19006 0.87692 0.91211 0.87669 1.83758 1.55024 1.41625 1.26147 1.20919 1.36564 0.95284 0.94339 0.87462 1.24500 0.95526 0.99950 0.93440 1.69638 1.38135 1.36039 1.06632 0.86229 0.80614 0.83760 0.77104 1.20035 1.21298 1.15771 1.21970 1.01362 0.95129 0.97577 1.30379 1.10893 1.06144 1.23569 1.09760 0.78995 0.76503 0.79512 1.93653 1.50585 1.62174 1.85576 1.93607 1.85915 1.45079 1.69204 1.30889 1.19594 1.13433 1.07254 0.88956 0.91712 0.91948 0.76431 0.86763 0.86945 0.86810 0.84418 0.90808 0.88854 0.87861 0.84541 0.84397 0.83723 0.82775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 7.79 37.16 0.29 -1.49 16 2 C 0.19 1.99 0.92 -131.50 -0.12 1.87 16 3 N -0.74 -9.56 5.03 -48.34 -0.24 -9.81 16 4 C 0.56 10.39 6.86 -12.47 -0.09 10.31 16 5 O -0.51 -11.20 11.42 -16.57 -0.19 -11.39 16 6 C -0.23 -4.44 5.89 -104.81 -0.62 -5.06 16 7 C -0.04 -0.60 9.53 -39.20 -0.37 -0.97 16 8 C -0.22 -3.33 10.03 -39.61 -0.40 -3.73 16 9 C -0.05 -0.83 10.03 -39.53 -0.40 -1.22 16 10 C -0.23 -4.68 9.16 -39.44 -0.36 -5.04 16 11 C 0.20 4.62 6.66 -38.60 -0.26 4.36 16 12 O -0.17 -4.39 6.67 -21.06 -0.14 -4.53 16 13 C -0.40 -11.09 9.95 30.90 0.31 -10.78 16 14 H 0.11 3.01 5.44 -52.49 -0.29 2.72 16 15 C 0.07 2.02 5.49 -17.52 -0.10 1.92 16 16 N -0.87 -24.97 13.96 55.48 0.77 -24.19 16 17 Si 0.90 22.51 28.62 -169.99 -4.86 17.65 16 18 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.24 -6.09 6.95 56.52 0.39 -5.70 16 21 C -0.12 -0.79 5.81 -26.42 -0.15 -0.94 16 22 C -0.58 -3.42 7.40 37.79 0.28 -3.14 16 23 S 2.37 25.52 6.07 -107.50 -0.65 24.86 16 24 O -0.92 -13.15 18.16 -57.67 -1.05 -14.20 16 25 O -0.94 -13.14 18.17 -57.67 -1.05 -14.19 16 26 C -0.58 -6.86 5.98 37.79 0.23 -6.64 16 27 H 0.09 1.40 6.04 -51.93 -0.31 1.09 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.40 4.02 5.95 -40.82 -0.24 3.78 16 31 H 0.11 1.30 6.40 -52.48 -0.34 0.96 16 32 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.14 2.96 5.64 -52.49 -0.30 2.67 16 35 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.09 0.48 7.25 -51.93 -0.38 0.11 16 37 H 0.10 0.48 7.52 -51.93 -0.39 0.09 16 38 H 0.14 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.14 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.14 1.39 7.86 -51.93 -0.41 0.98 16 41 H 0.15 2.36 6.20 -51.93 -0.32 2.03 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -36.92 346.03 -8.60 -45.53 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.65 Total: 5.59 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -1.76 Total: -20.55 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.53 Total: -34.00 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -2.42 Total: -44.30 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.86 Total: 17.65 kcal Atomic # 16 Polarization: 25.52 SS G_CDS: -0.65 Total: 24.86 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.92 -8.60 -45.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919981894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.187 kcal (2) G-P(sol) polarization free energy of solvation -36.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds