Wall clock time and date at job start Tue Mar 31 2020 22:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 108.88960 * 2 1 4 4 C 1.34779 * 120.00100 * 300.69891 * 3 2 1 5 5 O 1.21588 * 119.99914 * 0.02562 * 4 3 2 6 6 C 1.47536 * 120.00002 * 180.02562 * 4 3 2 7 7 C 1.39663 * 120.19677 * 0.23384 * 6 4 3 8 8 C 1.37831 * 119.92146 * 180.21029 * 7 6 4 9 9 C 1.38575 * 120.32058 * 359.81305 * 8 7 6 10 10 C 1.38030 * 120.39979 * 359.97401 * 9 8 7 11 11 C 1.38830 * 120.07381 * 359.97438 * 10 9 8 12 12 O 1.35521 * 120.16034 * 179.97438 * 11 10 9 13 13 C 1.34814 * 117.00180 * 5.58629 * 12 11 10 14 14 H 1.07996 * 119.99859 * 354.92557 * 13 12 11 15 15 C 1.38692 * 120.00062 * 174.93156 * 13 12 11 16 16 N 1.31524 * 120.00134 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 120.00002 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.46778 * 90.00468 * 17 15 13 19 19 H 1.48504 * 109.47130 * 209.99880 * 17 15 13 20 20 H 1.48491 * 109.46985 * 330.00340 * 17 15 13 21 21 C 1.52377 * 108.92854 * 118.66935 * 2 1 3 22 22 C 1.54208 * 112.29660 * 120.60786 * 21 2 1 23 23 S 1.83817 * 102.86163 * 25.04390 * 22 21 2 24 24 O 1.42105 * 109.81136 * 77.68412 * 23 22 21 25 25 O 1.42102 * 109.81547 * 211.99881 * 23 22 21 26 26 C 1.54202 * 108.92435 * 241.33350 * 2 1 3 27 27 H 1.08998 * 109.46898 * 59.29798 * 1 2 3 28 28 H 1.08996 * 109.47038 * 179.29910 * 1 2 3 29 29 H 1.09002 * 109.47102 * 299.29764 * 1 2 3 30 30 H 0.97000 * 120.00133 * 120.70392 * 3 2 1 31 31 H 1.08003 * 120.04531 * 359.97438 * 7 6 4 32 32 H 1.07998 * 119.84222 * 179.78910 * 8 7 6 33 33 H 1.07992 * 119.79982 * 180.02562 * 9 8 7 34 34 H 1.08002 * 119.96267 * 180.02562 * 10 9 8 35 35 H 0.97000 * 120.00036 * 180.02562 * 16 15 13 36 36 H 1.09003 * 108.92947 * 241.35150 * 21 2 1 37 37 H 1.09003 * 108.92683 * 0.02562 * 21 2 1 38 38 H 1.08997 * 110.73366 * 143.39136 * 22 21 2 39 39 H 1.08999 * 110.73308 * 266.52394 * 22 21 2 40 40 H 1.09003 * 110.73988 * 332.68569 * 26 2 1 41 41 H 1.09001 * 110.73934 * 96.00448 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0044 1.3861 0.0000 4 6 1.6587 2.2167 -1.0036 5 8 0.9529 1.8156 -1.9088 6 6 2.1369 3.6124 -1.0039 7 6 2.9518 4.0760 0.0312 8 6 3.3917 5.3822 0.0276 9 6 3.0325 6.2384 -1.0011 10 6 2.2313 5.7930 -2.0330 11 6 1.7798 4.4803 -2.0464 12 8 0.9926 4.0413 -3.0584 13 6 0.7783 4.8933 -4.0810 14 1 1.1577 5.9031 -4.0310 15 6 0.0705 4.4729 -5.1972 16 7 -0.1390 5.3043 -6.1946 17 14 -0.5853 2.7259 -5.2840 18 1 -1.9532 2.6816 -4.7075 19 1 -0.6309 2.2841 -6.7011 20 1 0.3066 1.8235 -4.5125 21 6 2.0244 -0.6915 1.2647 22 6 2.9013 -1.9214 0.9543 23 16 3.5610 -1.5419 -0.7189 24 8 4.6192 -0.5989 -0.6169 25 8 3.7446 -2.7471 -1.4491 26 6 2.0302 -0.6997 -1.2799 27 1 -0.3633 0.5247 -0.8836 28 1 -0.3633 -1.0276 -0.0126 29 1 -0.3633 0.5029 0.8962 30 1 2.5672 1.7061 0.7223 31 1 3.2339 3.4128 0.8357 32 1 4.0190 5.7403 0.8305 33 1 3.3823 7.2601 -0.9958 34 1 1.9560 6.4663 -2.8314 35 1 -0.6343 5.0104 -6.9751 36 1 2.6067 0.0189 1.8515 37 1 1.1637 -1.0128 1.8513 38 1 3.7117 -2.0099 1.6778 39 1 2.2996 -2.8301 0.9379 40 1 1.2986 -1.4263 -1.6336 41 1 2.2562 0.0312 -2.0562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919981894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:33 Heat of formation + Delta-G solvation = -117.553038 kcal Electronic energy + Delta-G solvation = -28212.952426 eV Core-core repulsion = 24185.572183 eV Total energy + Delta-G solvation = -4027.380243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.65126 -40.47895 -38.38001 -38.12764 -37.77205 -37.04999 -34.53759 -34.03766 -32.20836 -30.86774 -30.76390 -28.88620 -27.32325 -25.78445 -24.60191 -23.10249 -21.83812 -20.88410 -20.00116 -19.75561 -19.43126 -18.21536 -17.56909 -17.30340 -17.20853 -16.72116 -16.40874 -16.16144 -15.90889 -15.75114 -15.47955 -15.38962 -15.08959 -14.65748 -14.38281 -14.25094 -14.03443 -13.85552 -13.63110 -13.30978 -13.25780 -13.13554 -13.11928 -12.98589 -12.79734 -12.74610 -12.59066 -12.37139 -12.01811 -11.87131 -11.73497 -11.50080 -11.19171 -10.98244 -10.51205 -10.16560 -9.84036 -9.14754 -8.58832 -6.27781 -0.92356 0.06015 0.65147 1.23783 1.28055 1.50885 1.56486 2.02116 2.12204 2.27457 2.63186 2.75281 2.98603 3.00895 3.17381 3.37138 3.45259 3.68345 3.92011 4.00925 4.02893 4.06460 4.23666 4.32711 4.48758 4.57976 4.71755 4.75287 4.78423 4.81069 4.83437 4.93406 5.06123 5.14318 5.28127 5.40475 5.48221 5.57315 5.61838 5.69324 5.82830 6.15680 6.64180 6.78171 7.40994 7.57493 8.51626 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011830 B = 0.004549 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.272638 B = 6153.472108 C = 7500.478376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.181 3.819 3 N -0.716 5.716 4 C 0.557 3.443 5 O -0.552 6.552 6 C -0.236 4.236 7 C -0.032 4.032 8 C -0.190 4.190 9 C -0.044 4.044 10 C -0.253 4.253 11 C 0.161 3.839 12 O -0.207 6.207 13 C -0.402 4.402 14 H 0.089 0.911 15 C 0.024 3.976 16 N -0.913 5.913 17 Si 0.955 3.045 18 H -0.274 1.274 19 H -0.272 1.272 20 H -0.258 1.258 21 C -0.121 4.121 22 C -0.531 4.531 23 S 2.361 3.639 24 O -0.966 6.966 25 O -0.984 6.984 26 C -0.596 4.596 27 H 0.041 0.959 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.415 0.585 31 H 0.168 0.832 32 H 0.166 0.834 33 H 0.149 0.851 34 H 0.113 0.887 35 H 0.285 0.715 36 H 0.119 0.881 37 H 0.141 0.859 38 H 0.173 0.827 39 H 0.172 0.828 40 H 0.157 0.843 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.770 -12.960 23.791 27.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.093 3.907 3 N -0.373 5.373 4 C 0.346 3.654 5 O -0.431 6.431 6 C -0.240 4.240 7 C -0.050 4.050 8 C -0.208 4.208 9 C -0.062 4.062 10 C -0.272 4.272 11 C 0.108 3.892 12 O -0.111 6.111 13 C -0.478 4.478 14 H 0.106 0.894 15 C -0.176 4.176 16 N -0.553 5.553 17 Si 0.779 3.221 18 H -0.199 1.199 19 H -0.197 1.197 20 H -0.182 1.182 21 C -0.159 4.159 22 C -0.665 4.665 23 S 2.550 3.450 24 O -0.963 6.963 25 O -0.981 6.981 26 C -0.726 4.726 27 H 0.060 0.940 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.255 0.745 31 H 0.186 0.814 32 H 0.184 0.816 33 H 0.167 0.833 34 H 0.131 0.869 35 H 0.095 0.905 36 H 0.137 0.863 37 H 0.159 0.841 38 H 0.190 0.810 39 H 0.190 0.810 40 H 0.175 0.825 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.985 -13.623 22.388 26.882 hybrid contribution -1.009 0.554 -0.897 1.459 sum 4.976 -13.069 21.492 25.641 Atomic orbital electron populations 1.22370 0.92488 1.04117 1.03047 1.20533 0.96983 0.81255 0.91933 1.46136 1.54342 1.10573 1.26214 1.18267 0.79637 0.85575 0.81876 1.90820 1.38030 1.77255 1.36983 1.19371 1.11055 0.93809 0.99787 1.21408 0.91864 0.96768 0.94972 1.21242 1.05191 0.93479 1.00925 1.21435 0.92525 1.00745 0.91526 1.21329 1.06966 0.95459 1.03454 1.19767 0.88504 0.92990 0.87986 1.83748 1.58591 1.41582 1.27177 1.20867 1.36484 0.95016 0.95410 0.89352 1.25068 0.96431 1.02584 0.93513 1.69692 1.40831 1.37269 1.07541 0.85411 0.79368 0.80205 0.77149 1.19918 1.19665 1.18228 1.22083 1.03296 0.95422 0.95118 1.30188 1.11687 1.07392 1.17204 1.09774 0.78090 0.75097 0.82064 1.93584 1.52418 1.63326 1.87012 1.93546 1.86330 1.45842 1.72349 1.30923 1.21360 1.13151 1.07157 0.94018 0.88612 0.90340 0.74452 0.81436 0.81631 0.83347 0.86929 0.90537 0.86304 0.84089 0.80963 0.81019 0.82517 0.87306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 7.79 71.98 0.56 -2.66 16 2 C 0.18 3.34 0.92 3.81 0.00 3.34 16 3 N -0.72 -16.85 5.03 -425.12 -2.14 -18.98 16 4 C 0.56 20.70 6.86 86.70 0.59 21.30 16 5 O -0.55 -25.91 11.42 16.90 0.19 -25.72 16 6 C -0.24 -9.05 5.89 -19.99 -0.12 -9.16 16 7 C -0.03 -0.84 9.53 22.52 0.21 -0.63 16 8 C -0.19 -4.72 10.03 22.25 0.22 -4.49 16 9 C -0.04 -1.37 10.03 22.30 0.22 -1.14 16 10 C -0.25 -10.84 9.16 22.36 0.20 -10.64 16 11 C 0.16 7.73 6.66 22.91 0.15 7.88 16 12 O -0.21 -11.91 6.67 0.82 0.01 -11.90 16 13 C -0.40 -24.58 9.95 67.93 0.68 -23.90 16 14 H 0.09 5.51 5.44 -2.91 -0.02 5.50 16 15 C 0.02 1.46 5.49 84.85 0.47 1.93 16 16 N -0.91 -56.34 13.96 21.62 0.30 -56.04 16 17 Si 0.95 50.49 28.62 68.60 1.96 52.45 16 18 H -0.27 -14.12 7.11 99.48 0.71 -13.42 16 19 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.26 -14.46 6.95 99.48 0.69 -13.77 16 21 C -0.12 -0.76 5.81 30.80 0.18 -0.58 16 22 C -0.53 -2.82 7.40 72.39 0.54 -2.28 16 23 S 2.36 47.21 6.07 -56.49 -0.34 46.87 16 24 O -0.97 -26.59 18.16 -127.53 -2.32 -28.91 16 25 O -0.98 -27.17 18.17 -127.53 -2.32 -29.49 16 26 C -0.60 -14.08 5.98 72.39 0.43 -13.65 16 27 H 0.04 1.30 6.04 -2.39 -0.01 1.28 16 28 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.42 6.39 5.95 -92.71 -0.55 5.84 16 31 H 0.17 2.63 6.40 -2.91 -0.02 2.62 16 32 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 34 H 0.11 5.32 5.64 -2.91 -0.02 5.30 16 35 H 0.28 16.22 8.31 -92.71 -0.77 15.45 16 36 H 0.12 0.28 7.25 -2.39 -0.02 0.26 16 37 H 0.14 0.09 7.52 -2.39 -0.02 0.07 16 38 H 0.17 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.17 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.16 3.08 7.86 -2.39 -0.02 3.06 16 41 H 0.11 3.65 6.20 -2.39 -0.01 3.64 16 Total: -1.00 -94.88 346.03 0.22 -94.66 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.52 Total: 11.74 kcal Atomic # 6 Polarization: -39.04 SS G_CDS: 4.35 Total: -34.69 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -1.84 Total: -75.02 kcal Atomic # 8 Polarization: -91.59 SS G_CDS: -4.43 Total: -96.02 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 1.96 Total: 52.45 kcal Atomic # 16 Polarization: 47.21 SS G_CDS: -0.34 Total: 46.87 kcal Total: -94.88 0.22 -94.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919981894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.893 kcal (2) G-P(sol) polarization free energy of solvation -94.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds