Wall clock time and date at job start Tue Mar 31 2020 22:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86802 * 120.00069 * 2 1 4 4 H 1.48500 * 109.47468 * 270.00032 * 3 2 1 5 5 H 1.48504 * 109.47265 * 30.00045 * 3 2 1 6 6 H 1.48504 * 109.47352 * 149.99768 * 3 2 1 7 7 C 1.38793 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00547 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00076 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00188 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47141 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00039 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99929 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99782 * 180.02562 * 13 11 10 15 15 H 1.08997 * 115.51804 * 350.41176 * 14 13 11 16 16 C 1.53003 * 117.43995 * 205.00027 * 14 13 11 17 17 H 1.09002 * 119.52639 * 4.13127 * 16 14 13 18 18 C 1.54379 * 118.12574 * 159.17274 * 16 14 13 19 19 N 1.52141 * 102.89337 * 88.03498 * 18 16 14 20 20 C 1.46896 * 110.67132 * 200.86328 * 19 18 16 21 21 C 1.50708 * 109.46750 * 305.48538 * 20 19 18 22 22 C 1.33635 * 122.74460 * 94.73582 * 21 20 19 23 23 S 1.76203 * 107.92044 * 179.97438 * 22 21 20 24 24 C 1.70976 * 90.28281 * 0.27401 * 23 22 21 25 25 N 1.29027 * 110.16384 * 359.83755 * 24 23 22 26 26 C 1.48564 * 104.44068 * 320.38059 * 19 18 16 27 27 C 1.53000 * 117.40942 * 135.78397 * 14 13 11 28 28 H 1.08995 * 119.52394 * 355.92716 * 27 14 13 29 29 H 0.97005 * 119.99891 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46871 * 59.99717 * 10 9 7 31 31 H 1.08994 * 109.47361 * 299.99936 * 10 9 7 32 32 H 0.96997 * 120.00070 * 0.02562 * 13 11 10 33 33 H 1.09003 * 110.40749 * 207.97195 * 18 16 14 34 34 H 1.08998 * 110.41346 * 330.41375 * 18 16 14 35 35 H 1.09003 * 109.47085 * 65.48139 * 20 19 18 36 36 H 1.08995 * 109.47642 * 185.48820 * 20 19 18 37 37 H 1.07995 * 126.04442 * 0.02976 * 22 21 20 38 38 H 1.07994 * 124.91483 * 179.83978 * 24 23 22 39 39 H 1.08998 * 110.40696 * 280.96583 * 26 19 18 40 40 H 1.09002 * 110.41236 * 158.53133 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0018 14 6 2.3304 -7.7151 0.0019 15 1 1.2573 -7.8146 0.1652 16 6 3.2353 -8.8068 0.5764 17 1 4.1903 -8.5323 1.0244 18 6 2.5803 -10.1256 1.0402 19 7 2.5694 -10.9641 -0.2292 20 6 1.5678 -12.0344 -0.1351 21 6 1.8149 -12.8454 1.1109 22 6 1.1862 -12.6062 2.2656 23 16 1.7646 -13.7753 3.4502 24 6 2.8003 -14.4643 2.2772 25 7 2.6732 -13.8444 1.1527 26 6 2.2207 -10.0017 -1.3059 27 6 2.9955 -8.7163 -0.9448 28 1 3.7719 -8.3743 -1.6290 29 1 -0.4850 0.8401 0.0004 30 1 3.1245 -3.7313 0.8905 31 1 3.1244 -3.7314 -0.8894 32 1 3.8009 -6.1835 0.0022 33 1 3.1710 -10.5852 1.8327 34 1 1.5609 -9.9445 1.3810 35 1 0.5707 -11.5962 -0.0915 36 1 1.6429 -12.6804 -1.0098 37 1 0.4524 -11.8336 2.4414 38 1 3.4646 -15.2975 2.4521 39 1 1.1477 -9.8100 -1.3114 40 1 2.5448 -10.3814 -2.2749 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113899635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:04 Heat of formation + Delta-G solvation = 59.177645 kcal Electronic energy + Delta-G solvation = -23071.553960 eV Core-core repulsion = 19526.882957 eV Total energy + Delta-G solvation = -3544.671003 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.72204 -39.90879 -38.66180 -35.38315 -32.97234 -32.45248 -30.92225 -29.19570 -28.62298 -27.29245 -25.52951 -25.13660 -22.76747 -21.15772 -20.58215 -20.44520 -19.89889 -18.29848 -17.87289 -17.05665 -16.45820 -16.17960 -15.93339 -14.96963 -14.88078 -14.82334 -14.67708 -14.37851 -14.06114 -13.78347 -13.48718 -13.42075 -13.08643 -12.86759 -12.59958 -12.47328 -12.17793 -11.98944 -11.76616 -11.47817 -11.08568 -11.05143 -10.95037 -10.79238 -10.32655 -10.04770 -9.86432 -9.84227 -9.53443 -9.32097 -9.09132 -8.79438 -8.74016 -8.27804 -6.53424 -6.24187 -3.95202 0.29174 0.97745 1.31450 2.32967 2.84534 2.85509 3.20892 3.24217 3.28773 3.51176 3.54018 3.71229 3.78417 4.17826 4.37025 4.43563 4.57774 4.63636 4.76006 4.85026 4.87411 4.94640 5.06015 5.08676 5.11174 5.17723 5.28108 5.36335 5.50192 5.57419 5.66919 5.71693 5.83130 5.84989 5.92033 6.08976 6.27479 6.50563 6.59067 7.33828 7.56897 7.59251 8.32732 8.49860 9.21235 10.83218 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.030348 B = 0.001709 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.422744 B =16375.778445 C =16699.505504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.538 3.462 12 O -0.514 6.514 13 N -0.709 5.709 14 C 0.123 3.877 15 H 0.133 0.867 16 C -0.175 4.175 17 H 0.118 0.882 18 C 0.065 3.935 19 N -0.500 5.500 20 C 0.115 3.885 21 C 0.073 3.927 22 C -0.251 4.251 23 S 0.119 5.881 24 C 0.020 3.980 25 N -0.454 5.454 26 C 0.064 3.936 27 C -0.172 4.172 28 H 0.121 0.879 29 H 0.269 0.731 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.401 0.599 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.177 0.823 38 H 0.199 0.801 39 H 0.052 0.948 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.769 -29.038 4.098 30.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.324 3.676 12 O -0.387 6.387 13 N -0.360 5.360 14 C 0.015 3.985 15 H 0.151 0.849 16 C -0.196 4.196 17 H 0.136 0.864 18 C -0.062 4.062 19 N -0.225 5.225 20 C -0.016 4.016 21 C -0.059 4.059 22 C -0.391 4.391 23 S 0.371 5.629 24 C -0.278 4.278 25 N -0.167 5.167 26 C -0.063 4.063 27 C -0.192 4.192 28 H 0.139 0.861 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.236 0.764 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.194 0.806 38 H 0.216 0.784 39 H 0.070 0.930 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.229 -29.926 4.596 30.725 hybrid contribution 1.715 2.098 -0.528 2.760 sum 6.943 -27.828 4.068 28.969 Atomic orbital electron populations 1.70017 1.05954 1.27495 1.46792 1.24994 0.95040 0.99053 0.94492 0.86159 0.79405 0.81513 0.78370 1.20249 1.20732 1.19688 1.22865 0.94927 0.91593 1.59056 0.90877 1.85404 1.04738 0.96328 1.96736 1.23533 1.06756 0.94977 1.05123 1.20363 0.86462 0.86133 0.74598 1.90700 1.15351 1.85473 1.47196 1.45376 1.09949 1.03864 1.76846 1.21659 0.97828 0.79006 1.00017 0.84921 1.23838 1.02077 0.96683 0.96967 0.86410 1.23222 0.99455 0.90734 0.92784 1.66632 1.43753 1.08899 1.03185 1.20782 0.93859 0.92741 0.94191 1.20105 0.94712 0.95253 0.95855 1.26973 1.09409 1.06626 0.96058 1.84139 1.35836 1.25838 1.17088 1.28454 1.03649 1.04465 0.91265 1.66111 1.17822 1.07529 1.25218 1.22591 0.98004 0.89894 0.95834 1.23959 1.03987 0.98098 0.93202 0.86133 0.92154 0.89036 0.89016 0.76448 0.89506 0.92920 0.92554 0.88564 0.80560 0.78386 0.92953 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.98 13.22 55.49 0.73 -25.24 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -15.14 9.50 30.94 0.29 -14.84 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 11 C 0.54 9.81 7.85 -10.99 -0.09 9.72 16 12 O -0.51 -11.40 15.43 5.55 0.09 -11.31 16 13 N -0.71 -9.33 5.56 -53.80 -0.30 -9.63 16 14 C 0.12 1.45 5.97 -67.93 -0.41 1.05 16 15 H 0.13 1.81 7.40 -51.93 -0.38 1.43 16 16 C -0.18 -1.69 6.96 -89.23 -0.62 -2.31 16 17 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 18 C 0.06 0.59 5.04 -0.11 0.00 0.59 16 19 N -0.50 -4.69 5.54 -228.14 -1.26 -5.95 16 20 C 0.11 0.96 5.54 -4.97 -0.03 0.94 16 21 C 0.07 0.65 5.41 -84.23 -0.46 0.19 16 22 C -0.25 -1.82 10.20 29.12 0.30 -1.52 16 23 S 0.12 0.70 23.22 -107.50 -2.50 -1.79 16 24 C 0.02 0.14 12.23 51.58 0.63 0.77 16 25 N -0.45 -4.34 10.53 -11.90 -0.13 -4.47 16 26 C 0.06 0.58 6.31 -2.18 -0.01 0.57 16 27 C -0.17 -1.69 7.05 -89.24 -0.63 -2.32 16 28 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 31 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 32 H 0.40 4.12 8.83 -40.82 -0.36 3.76 16 33 H 0.09 0.81 7.97 -51.93 -0.41 0.40 16 34 H 0.05 0.47 7.90 -51.93 -0.41 0.06 16 35 H 0.06 0.41 7.84 -51.93 -0.41 0.00 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.20 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.05 0.47 7.82 -51.93 -0.41 0.06 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -34.96 367.48 -11.26 -46.22 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.31 Total: 2.19 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -0.89 Total: -7.99 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.95 Total: -45.30 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -4.71 Total: -5.58 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.96 -11.26 -46.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113899635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.397 kcal (2) G-P(sol) polarization free energy of solvation -34.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds