Wall clock time and date at job start Tue Mar 31 2020 22:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86802 * 120.00069 * 2 1 4 4 H 1.48500 * 109.47468 * 270.00032 * 3 2 1 5 5 H 1.48504 * 109.47265 * 30.00045 * 3 2 1 6 6 H 1.48504 * 109.47352 * 149.99768 * 3 2 1 7 7 C 1.38793 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00547 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00076 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00188 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47141 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00039 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99929 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99782 * 180.02562 * 13 11 10 15 15 H 1.08997 * 115.51804 * 350.41176 * 14 13 11 16 16 C 1.53003 * 117.43995 * 205.00027 * 14 13 11 17 17 H 1.09002 * 119.52639 * 4.13127 * 16 14 13 18 18 C 1.54379 * 118.12574 * 159.17274 * 16 14 13 19 19 N 1.52141 * 102.89337 * 88.03498 * 18 16 14 20 20 C 1.46896 * 110.67132 * 200.86328 * 19 18 16 21 21 C 1.50708 * 109.46750 * 305.48538 * 20 19 18 22 22 C 1.33635 * 122.74460 * 94.73582 * 21 20 19 23 23 S 1.76203 * 107.92044 * 179.97438 * 22 21 20 24 24 C 1.70976 * 90.28281 * 0.27401 * 23 22 21 25 25 N 1.29027 * 110.16384 * 359.83755 * 24 23 22 26 26 C 1.48564 * 104.44068 * 320.38059 * 19 18 16 27 27 C 1.53000 * 117.40942 * 135.78397 * 14 13 11 28 28 H 1.08995 * 119.52394 * 355.92716 * 27 14 13 29 29 H 0.97005 * 119.99891 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46871 * 59.99717 * 10 9 7 31 31 H 1.08994 * 109.47361 * 299.99936 * 10 9 7 32 32 H 0.96997 * 120.00070 * 0.02562 * 13 11 10 33 33 H 1.09003 * 110.40749 * 207.97195 * 18 16 14 34 34 H 1.08998 * 110.41346 * 330.41375 * 18 16 14 35 35 H 1.09003 * 109.47085 * 65.48139 * 20 19 18 36 36 H 1.08995 * 109.47642 * 185.48820 * 20 19 18 37 37 H 1.07995 * 126.04442 * 0.02976 * 22 21 20 38 38 H 1.07994 * 124.91483 * 179.83978 * 24 23 22 39 39 H 1.08998 * 110.40696 * 280.96583 * 26 19 18 40 40 H 1.09002 * 110.41236 * 158.53133 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0018 14 6 2.3304 -7.7151 0.0019 15 1 1.2573 -7.8146 0.1652 16 6 3.2353 -8.8068 0.5764 17 1 4.1903 -8.5323 1.0244 18 6 2.5803 -10.1256 1.0402 19 7 2.5694 -10.9641 -0.2292 20 6 1.5678 -12.0344 -0.1351 21 6 1.8149 -12.8454 1.1109 22 6 1.1862 -12.6062 2.2656 23 16 1.7646 -13.7753 3.4502 24 6 2.8003 -14.4643 2.2772 25 7 2.6732 -13.8444 1.1527 26 6 2.2207 -10.0017 -1.3059 27 6 2.9955 -8.7163 -0.9448 28 1 3.7719 -8.3743 -1.6290 29 1 -0.4850 0.8401 0.0004 30 1 3.1245 -3.7313 0.8905 31 1 3.1244 -3.7314 -0.8894 32 1 3.8009 -6.1835 0.0022 33 1 3.1710 -10.5852 1.8327 34 1 1.5609 -9.9445 1.3810 35 1 0.5707 -11.5962 -0.0915 36 1 1.6429 -12.6804 -1.0098 37 1 0.4524 -11.8336 2.4414 38 1 3.4646 -15.2975 2.4521 39 1 1.1477 -9.8100 -1.3114 40 1 2.5448 -10.3814 -2.2749 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113899635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:03 Heat of formation + Delta-G solvation = 33.094217 kcal Electronic energy + Delta-G solvation = -23072.685022 eV Core-core repulsion = 19526.882957 eV Total energy + Delta-G solvation = -3545.802065 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.50406 -40.75057 -39.83716 -36.32340 -34.58925 -34.06140 -31.67240 -30.55108 -29.38043 -28.03408 -27.63646 -25.75228 -23.60563 -22.04072 -21.81505 -21.29910 -20.47785 -19.81891 -18.82974 -18.08384 -17.84908 -16.88175 -16.80522 -16.76184 -16.41921 -16.01548 -15.56137 -15.39144 -14.97991 -14.78885 -14.52388 -14.36986 -14.07694 -14.05259 -13.74352 -13.52458 -13.17084 -13.12168 -12.89535 -12.73107 -12.59391 -12.57741 -12.13588 -11.89839 -11.74876 -11.16668 -11.14474 -11.02440 -10.59099 -10.40146 -10.28862 -9.89097 -9.80615 -9.49061 -8.67283 -8.35032 -6.13197 -0.22440 0.49248 0.80139 1.23791 1.42562 1.45058 1.47666 1.56024 1.74866 2.08274 2.26939 2.63206 2.96681 2.99313 3.25363 3.28802 3.53434 3.66617 3.79834 3.87098 3.95635 4.15139 4.20222 4.24101 4.29005 4.37879 4.43511 4.47845 4.49368 4.56645 4.73098 4.75938 4.86090 5.04080 5.09984 5.12628 5.41892 5.43598 5.57508 5.86846 6.19634 6.41996 6.80688 7.06448 7.16752 8.74112 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.030348 B = 0.001709 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.422744 B =16375.778445 C =16699.505504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.084 0.916 9 S -0.149 6.149 10 C -0.129 4.129 11 C 0.540 3.460 12 O -0.562 6.562 13 N -0.684 5.684 14 C 0.099 3.901 15 H 0.111 0.889 16 C -0.158 4.158 17 H 0.132 0.868 18 C 0.068 3.932 19 N -0.506 5.506 20 C 0.116 3.884 21 C 0.057 3.943 22 C -0.261 4.261 23 S 0.155 5.845 24 C 0.017 3.983 25 N -0.490 5.490 26 C 0.064 3.936 27 C -0.160 4.160 28 H 0.133 0.867 29 H 0.271 0.729 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.419 0.581 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.186 0.814 38 H 0.226 0.774 39 H 0.050 0.950 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.264 -29.841 4.575 31.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.078 5.922 10 C -0.280 4.280 11 C 0.327 3.673 12 O -0.439 6.439 13 N -0.335 5.335 14 C -0.008 4.008 15 H 0.128 0.872 16 C -0.178 4.178 17 H 0.150 0.850 18 C -0.059 4.059 19 N -0.231 5.231 20 C -0.015 4.015 21 C -0.075 4.075 22 C -0.401 4.401 23 S 0.408 5.592 24 C -0.281 4.281 25 N -0.204 5.204 26 C -0.064 4.064 27 C -0.180 4.180 28 H 0.150 0.850 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.256 0.744 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.203 0.797 38 H 0.242 0.758 39 H 0.068 0.932 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.779 -30.778 5.077 32.149 hybrid contribution 0.968 2.143 -0.627 2.434 sum 8.747 -28.635 4.450 30.270 Atomic orbital electron populations 1.70182 1.07959 1.28613 1.47986 1.26126 0.95972 1.03322 0.93743 0.84952 0.78206 0.76025 0.78786 1.19328 1.20336 1.18180 1.23210 0.95393 0.91958 1.58878 0.89820 1.85583 1.10390 0.99201 1.97065 1.23362 1.03700 0.93905 1.07057 1.20076 0.86145 0.86508 0.74569 1.90690 1.17381 1.85969 1.49908 1.45023 1.10225 1.03465 1.74788 1.21661 0.97302 0.78574 1.03306 0.87154 1.23877 1.01567 0.95355 0.96996 0.84987 1.23202 0.99482 0.90380 0.92871 1.66631 1.44349 1.09006 1.03140 1.20772 0.93955 0.92436 0.94327 1.20150 0.95403 0.95676 0.96299 1.27166 1.09421 1.07207 0.96291 1.84010 1.34784 1.24633 1.15816 1.28942 1.03661 1.04615 0.90866 1.66125 1.19024 1.08535 1.26748 1.22638 0.97853 0.89549 0.96344 1.24008 1.03386 0.97037 0.93616 0.84956 0.91991 0.86974 0.86941 0.74350 0.89417 0.92902 0.91849 0.88869 0.79690 0.75810 0.93210 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.68 13.22 21.65 0.29 -55.39 16 2 C 0.01 0.74 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.55 -30.92 9.50 67.95 0.65 -30.27 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.21 20.57 -56.49 -1.16 -9.38 16 10 C -0.13 -4.99 6.16 71.23 0.44 -4.55 16 11 C 0.54 19.53 7.85 87.66 0.69 20.21 16 12 O -0.56 -25.64 15.43 -3.04 -0.05 -25.69 16 13 N -0.68 -16.95 5.56 -442.52 -2.46 -19.41 16 14 C 0.10 2.24 5.97 44.99 0.27 2.51 16 15 H 0.11 3.07 7.40 -2.39 -0.02 3.06 16 16 C -0.16 -2.73 6.96 -9.90 -0.07 -2.80 16 17 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 18 C 0.07 1.15 5.04 85.73 0.43 1.58 16 19 N -0.51 -8.88 5.54 -875.69 -4.85 -13.74 16 20 C 0.12 1.87 5.54 85.56 0.47 2.34 16 21 C 0.06 0.96 5.41 41.53 0.22 1.18 16 22 C -0.26 -3.52 10.20 66.78 0.68 -2.84 16 23 S 0.15 1.57 23.22 -56.49 -1.31 0.26 16 24 C 0.02 0.20 12.23 130.65 1.60 1.80 16 25 N -0.49 -8.91 10.53 -191.56 -2.02 -10.93 16 26 C 0.06 1.07 6.31 86.45 0.55 1.61 16 27 C -0.16 -2.85 7.05 -9.90 -0.07 -2.92 16 28 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 30 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 31 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 32 H 0.42 7.43 8.83 -92.71 -0.82 6.61 16 33 H 0.09 1.50 7.97 -2.39 -0.02 1.48 16 34 H 0.05 0.90 7.90 -2.39 -0.02 0.88 16 35 H 0.06 0.90 7.84 -2.39 -0.02 0.88 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.19 2.01 8.06 -2.91 -0.02 1.98 16 38 H 0.23 1.13 8.06 -2.91 -0.02 1.10 16 39 H 0.05 0.86 7.82 -2.39 -0.02 0.84 16 40 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -77.71 367.48 -2.96 -80.67 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.25 Total: 19.25 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 6.32 Total: -10.93 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -9.04 Total: -99.47 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.05 Total: -25.69 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -6.64 SS G_CDS: -2.47 Total: -9.12 kcal Total: -77.71 -2.96 -80.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113899635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.763 kcal (2) G-P(sol) polarization free energy of solvation -77.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds