Wall clock time and date at job start Tue Mar 31 2020 22:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36635 * 125.45492 * 51.60711 * 3 2 1 5 5 C 1.37618 * 113.26559 * 179.97438 * 4 3 2 6 6 C 1.33717 * 115.09620 * 359.97438 * 5 4 3 7 7 C 1.50696 * 124.50749 * 179.97438 * 6 5 4 8 8 N 1.46908 * 109.47167 * 90.02963 * 7 6 5 9 9 C 1.46891 * 111.00084 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47144 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46961 * 180.02562 * 10 9 8 12 12 N 1.46499 * 109.46795 * 180.02562 * 11 10 9 13 13 C 1.34783 * 120.00130 * 180.02562 * 12 11 10 14 14 O 1.21284 * 119.99376 * 359.97438 * 13 12 11 15 15 C 1.50694 * 120.00238 * 179.97438 * 13 12 11 16 16 S 1.80992 * 109.47062 * 179.97438 * 15 13 12 17 17 C 1.76208 * 99.99998 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99911 * 0.02562 * 17 16 15 19 19 C 1.38794 * 119.99966 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00038 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99927 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47515 * 59.99953 * 21 19 17 23 23 H 1.48501 * 109.47366 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47306 * 299.99747 * 21 19 17 25 25 S 1.70609 * 110.97575 * 0.02562 * 6 5 4 26 26 H 1.07992 * 123.36750 * 359.73244 * 4 3 2 27 27 H 1.08000 * 122.44759 * 180.02562 * 5 4 3 28 28 H 1.09006 * 109.46869 * 210.02426 * 7 6 5 29 29 H 1.08994 * 109.47554 * 330.02643 * 7 6 5 30 30 H 1.00903 * 110.99623 * 56.04170 * 8 7 6 31 31 H 1.08999 * 109.47426 * 300.00456 * 9 8 7 32 32 H 1.09008 * 109.46821 * 59.99974 * 9 8 7 33 33 H 1.08994 * 109.47048 * 300.00460 * 10 9 8 34 34 H 1.08995 * 109.46884 * 60.00355 * 10 9 8 35 35 H 1.09001 * 109.47084 * 299.99678 * 11 10 9 36 36 H 1.08995 * 109.47292 * 60.00285 * 11 10 9 37 37 H 0.97000 * 120.00339 * 359.97438 * 12 11 10 38 38 H 1.08999 * 109.47430 * 300.00206 * 15 13 12 39 39 H 1.09008 * 109.47242 * 59.99984 * 15 13 12 40 40 H 0.97006 * 119.99590 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3609 -0.6902 -0.8723 5 6 4.7060 -0.5087 -0.6449 6 6 5.0043 0.3017 0.3760 7 6 6.4053 0.6470 0.8107 8 7 6.8600 1.8445 0.0914 9 6 8.2249 2.2121 0.4910 10 6 8.6628 3.4603 -0.2778 11 6 10.0847 3.8427 0.1380 12 7 10.5037 5.0382 -0.5978 13 6 11.7291 5.5606 -0.3930 14 8 12.4847 5.0411 0.4009 15 6 12.1604 6.7900 -1.1502 16 16 13.8424 7.2426 -0.6582 17 6 14.0830 8.6677 -1.6662 18 1 13.2965 9.0006 -2.3273 19 6 15.2833 9.3624 -1.6105 20 7 16.2417 8.9569 -0.8044 21 14 15.5381 10.8736 -2.6785 22 1 14.5157 11.8964 -2.3412 23 1 16.8932 11.4297 -2.4342 24 1 15.4079 10.4966 -4.1090 25 16 3.5877 0.8914 1.1217 26 1 2.9711 -1.3191 -1.6590 27 1 5.4650 -0.9853 -1.2476 28 1 6.4153 0.8417 1.8832 29 1 7.0711 -0.1863 0.5864 30 1 6.2228 2.6142 0.2316 31 1 8.2473 2.4176 1.5612 32 1 8.9036 1.3896 0.2648 33 1 8.6405 3.2542 -1.3479 34 1 7.9842 4.2827 -0.0520 35 1 10.1073 4.0486 1.2081 36 1 10.7630 3.0201 -0.0882 37 1 9.8995 5.4534 -1.2330 38 1 12.1374 6.5843 -2.2204 39 1 11.4822 7.6128 -0.9238 40 1 17.0804 9.4428 -0.7653 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154803265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:08 Heat of formation + Delta-G solvation = 16.982167 kcal Electronic energy + Delta-G solvation = -21512.309914 eV Core-core repulsion = 17965.809178 eV Total energy + Delta-G solvation = -3546.500736 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.24981 -39.03529 -37.46453 -36.72657 -34.97585 -32.46517 -32.42049 -30.55071 -28.97696 -26.97402 -25.51092 -24.54572 -23.27705 -21.90823 -21.50420 -20.31767 -18.90271 -17.82897 -17.10375 -16.49693 -16.25333 -16.18606 -15.59857 -15.39438 -15.15042 -14.80772 -14.57417 -14.53886 -14.19914 -13.93853 -13.72533 -13.36547 -13.19699 -13.02094 -12.94384 -12.66389 -12.60384 -12.29128 -11.98789 -11.87535 -11.77434 -11.50698 -11.18532 -11.05106 -11.04026 -10.77241 -9.83129 -9.45204 -9.40554 -9.21646 -9.06974 -9.03471 -8.90089 -8.24852 -6.50747 -6.22076 -3.92872 -0.19655 0.53752 1.18660 1.76711 2.34710 2.74946 3.00325 3.08716 3.23195 3.26862 3.29711 3.34573 3.54898 3.80844 4.05725 4.20163 4.45323 4.59873 4.68785 4.75598 4.79276 4.89589 5.00659 5.13059 5.17575 5.19529 5.31005 5.32763 5.45461 5.51595 5.63212 5.70194 5.81922 5.90220 5.93251 6.13247 6.31687 6.60310 6.71076 6.87197 7.58735 7.69120 8.34500 8.59951 9.23166 10.85318 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.032928 B = 0.001262 C = 0.001235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.123763 B =22182.587813 C =22660.430694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.281 3.719 3 C -0.171 4.171 4 C -0.055 4.055 5 C -0.127 4.127 6 C -0.191 4.191 7 C 0.125 3.875 8 N -0.684 5.684 9 C 0.061 3.939 10 C -0.129 4.129 11 C 0.123 3.877 12 N -0.739 5.739 13 C 0.531 3.469 14 O -0.518 6.518 15 C -0.154 4.154 16 S -0.061 6.061 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 S 0.245 5.755 26 H 0.154 0.846 27 H 0.152 0.848 28 H 0.047 0.953 29 H 0.098 0.902 30 H 0.343 0.657 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.398 0.602 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.833 -19.618 1.979 32.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.035 4.035 3 C -0.292 4.292 4 C -0.092 4.092 5 C -0.158 4.158 6 C -0.312 4.312 7 C -0.005 4.005 8 N -0.316 5.316 9 C -0.068 4.068 10 C -0.167 4.167 11 C -0.002 4.002 12 N -0.394 5.394 13 C 0.317 3.683 14 O -0.392 6.392 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 S 0.514 5.486 26 H 0.172 0.828 27 H 0.170 0.830 28 H 0.065 0.935 29 H 0.117 0.883 30 H 0.161 0.839 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.232 0.768 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -26.178 -19.830 4.095 33.095 hybrid contribution -0.447 1.146 -2.329 2.633 sum -26.625 -18.684 1.766 32.575 Atomic orbital electron populations 1.81332 1.11199 1.08231 1.07553 1.24327 0.90974 0.93999 0.94195 1.20355 0.89233 1.12156 1.07430 1.20785 0.92291 0.97969 0.98142 1.19936 0.96101 1.01120 0.98667 1.24197 1.00454 1.04231 1.02296 1.20448 0.89270 0.95129 0.95658 1.60498 1.03854 1.07214 1.59988 1.21889 0.89553 0.97985 0.97370 1.21737 0.95815 0.97311 1.01834 1.21172 0.94350 0.88061 0.96637 1.45980 1.17045 1.30457 1.45939 1.20317 0.80695 0.84933 0.82334 1.90702 1.52219 1.61271 1.35056 1.23533 1.06818 0.97309 1.02788 1.85391 1.06086 1.35308 1.56610 1.22833 1.03775 1.13763 1.28121 0.90967 1.24983 0.94876 0.97900 0.95744 1.70011 1.05204 1.39411 1.35692 0.86228 0.77536 0.81519 0.80239 1.19944 1.20801 1.19924 1.83304 0.92868 1.43413 1.29050 0.82843 0.83041 0.93504 0.88339 0.83858 0.94416 0.90099 0.90150 0.91305 0.91769 0.91515 0.76781 0.89188 0.89227 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.04 18.54 41.84 0.78 -3.26 16 2 C 0.28 2.12 15.83 -22.47 -0.36 1.76 16 3 C -0.17 -0.89 6.32 -38.24 -0.24 -1.14 16 4 C -0.06 -0.22 10.24 -40.39 -0.41 -0.63 16 5 C -0.13 -0.47 10.00 -41.39 -0.41 -0.89 16 6 C -0.19 -0.75 5.79 -35.90 -0.21 -0.95 16 7 C 0.13 0.46 6.11 -4.97 -0.03 0.43 16 8 N -0.68 -3.22 6.49 -115.06 -0.75 -3.97 16 9 C 0.06 0.32 5.68 -3.83 -0.02 0.30 16 10 C -0.13 -0.82 5.59 -26.73 -0.15 -0.97 16 11 C 0.12 1.24 5.67 -4.04 -0.02 1.22 16 12 N -0.74 -9.20 5.56 -60.30 -0.33 -9.53 16 13 C 0.53 9.64 7.85 -10.99 -0.09 9.56 16 14 O -0.52 -11.57 15.86 5.55 0.09 -11.48 16 15 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 17 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 18 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 21 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 S 0.25 0.98 23.01 -107.50 -2.47 -1.49 16 26 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 27 H 0.15 0.40 8.06 -52.49 -0.42 -0.03 16 28 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.34 1.45 8.72 -39.29 -0.34 1.11 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.40 3.77 8.47 -40.82 -0.35 3.42 16 38 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 39 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 385.20 15.07 5.80 5.80 Total: -1.00 -35.57 385.20 -10.22 -45.79 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -5.31 Total: -1.93 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -1.52 Total: -7.00 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.43 Total: -42.05 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -4.69 Total: -5.33 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.57 -10.22 -45.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154803265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.775 kcal (2) G-P(sol) polarization free energy of solvation -35.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds