Wall clock time and date at job start Tue Mar 31 2020 22:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36635 * 125.45492 * 51.60711 * 3 2 1 5 5 C 1.37618 * 113.26559 * 179.97438 * 4 3 2 6 6 C 1.33717 * 115.09620 * 359.97438 * 5 4 3 7 7 C 1.50696 * 124.50749 * 179.97438 * 6 5 4 8 8 N 1.46908 * 109.47167 * 90.02963 * 7 6 5 9 9 C 1.46891 * 111.00084 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47144 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46961 * 180.02562 * 10 9 8 12 12 N 1.46499 * 109.46795 * 180.02562 * 11 10 9 13 13 C 1.34783 * 120.00130 * 180.02562 * 12 11 10 14 14 O 1.21284 * 119.99376 * 359.97438 * 13 12 11 15 15 C 1.50694 * 120.00238 * 179.97438 * 13 12 11 16 16 S 1.80992 * 109.47062 * 179.97438 * 15 13 12 17 17 C 1.76208 * 99.99998 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99911 * 0.02562 * 17 16 15 19 19 C 1.38794 * 119.99966 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00038 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99927 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47515 * 59.99953 * 21 19 17 23 23 H 1.48501 * 109.47366 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47306 * 299.99747 * 21 19 17 25 25 S 1.70609 * 110.97575 * 0.02562 * 6 5 4 26 26 H 1.07992 * 123.36750 * 359.73244 * 4 3 2 27 27 H 1.08000 * 122.44759 * 180.02562 * 5 4 3 28 28 H 1.09006 * 109.46869 * 210.02426 * 7 6 5 29 29 H 1.08994 * 109.47554 * 330.02643 * 7 6 5 30 30 H 1.00903 * 110.99623 * 56.04170 * 8 7 6 31 31 H 1.08999 * 109.47426 * 300.00456 * 9 8 7 32 32 H 1.09008 * 109.46821 * 59.99974 * 9 8 7 33 33 H 1.08994 * 109.47048 * 300.00460 * 10 9 8 34 34 H 1.08995 * 109.46884 * 60.00355 * 10 9 8 35 35 H 1.09001 * 109.47084 * 299.99678 * 11 10 9 36 36 H 1.08995 * 109.47292 * 60.00285 * 11 10 9 37 37 H 0.97000 * 120.00339 * 359.97438 * 12 11 10 38 38 H 1.08999 * 109.47430 * 300.00206 * 15 13 12 39 39 H 1.09008 * 109.47242 * 59.99984 * 15 13 12 40 40 H 0.97006 * 119.99590 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3609 -0.6902 -0.8723 5 6 4.7060 -0.5087 -0.6449 6 6 5.0043 0.3017 0.3760 7 6 6.4053 0.6470 0.8107 8 7 6.8600 1.8445 0.0914 9 6 8.2249 2.2121 0.4910 10 6 8.6628 3.4603 -0.2778 11 6 10.0847 3.8427 0.1380 12 7 10.5037 5.0382 -0.5978 13 6 11.7291 5.5606 -0.3930 14 8 12.4847 5.0411 0.4009 15 6 12.1604 6.7900 -1.1502 16 16 13.8424 7.2426 -0.6582 17 6 14.0830 8.6677 -1.6662 18 1 13.2965 9.0006 -2.3273 19 6 15.2833 9.3624 -1.6105 20 7 16.2417 8.9569 -0.8044 21 14 15.5381 10.8736 -2.6785 22 1 14.5157 11.8964 -2.3412 23 1 16.8932 11.4297 -2.4342 24 1 15.4079 10.4966 -4.1090 25 16 3.5877 0.8914 1.1217 26 1 2.9711 -1.3191 -1.6590 27 1 5.4650 -0.9853 -1.2476 28 1 6.4153 0.8417 1.8832 29 1 7.0711 -0.1863 0.5864 30 1 6.2228 2.6142 0.2316 31 1 8.2473 2.4176 1.5612 32 1 8.9036 1.3896 0.2648 33 1 8.6405 3.2542 -1.3479 34 1 7.9842 4.2827 -0.0520 35 1 10.1073 4.0486 1.2081 36 1 10.7630 3.0201 -0.0882 37 1 9.8995 5.4534 -1.2330 38 1 12.1374 6.5843 -2.2204 39 1 11.4822 7.6128 -0.9238 40 1 17.0804 9.4428 -0.7653 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154803265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:08 Heat of formation + Delta-G solvation = -8.165624 kcal Electronic energy + Delta-G solvation = -21513.400404 eV Core-core repulsion = 17965.809178 eV Total energy + Delta-G solvation = -3547.591226 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.57488 -39.40537 -38.00396 -37.32797 -35.91726 -34.56795 -33.20466 -31.39716 -30.05699 -27.72958 -27.40273 -25.17490 -23.65554 -22.52720 -21.88127 -21.62772 -19.81080 -19.24934 -17.73158 -17.45615 -17.28113 -17.00844 -16.86048 -16.42367 -16.02168 -15.84614 -15.59765 -15.31710 -15.11842 -14.71177 -14.63918 -14.42204 -14.23905 -13.98682 -13.53511 -13.47399 -13.34932 -13.15254 -12.99668 -12.84611 -12.70953 -12.65286 -12.46892 -12.37506 -11.84897 -11.74152 -11.72099 -11.11266 -10.93464 -10.26095 -10.07506 -9.78383 -9.51762 -9.36768 -8.64943 -8.32968 -6.11106 -0.55176 0.18152 0.87861 1.29019 1.42558 1.45385 1.48973 1.58696 1.64425 1.81189 2.24496 2.28243 2.33392 2.88067 3.01267 3.23692 3.35431 3.76059 3.98123 4.07586 4.15284 4.25443 4.27912 4.33337 4.43026 4.54031 4.60434 4.61887 4.74992 4.75379 4.85575 5.03342 5.21732 5.22586 5.26577 5.42639 5.43248 5.50488 5.96130 6.21227 6.33068 6.39045 6.55279 7.08387 7.28513 8.76028 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.032928 B = 0.001262 C = 0.001235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.123763 B =22182.587813 C =22660.430694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.303 3.697 3 C -0.197 4.197 4 C -0.043 4.043 5 C -0.132 4.132 6 C -0.187 4.187 7 C 0.125 3.875 8 N -0.687 5.687 9 C 0.065 3.935 10 C -0.114 4.114 11 C 0.121 3.879 12 N -0.713 5.713 13 C 0.532 3.468 14 O -0.568 6.568 15 C -0.130 4.130 16 S -0.153 6.153 17 C -0.548 4.548 18 H 0.083 0.917 19 C 0.015 3.985 20 N -0.912 5.912 21 Si 0.998 3.002 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.262 1.262 25 S 0.257 5.743 26 H 0.170 0.830 27 H 0.166 0.834 28 H 0.054 0.946 29 H 0.105 0.895 30 H 0.347 0.653 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.417 0.583 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.060 -19.387 0.551 33.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.012 4.012 3 C -0.318 4.318 4 C -0.079 4.079 5 C -0.163 4.163 6 C -0.308 4.308 7 C -0.005 4.005 8 N -0.319 5.319 9 C -0.064 4.064 10 C -0.152 4.152 11 C -0.003 4.003 12 N -0.367 5.367 13 C 0.317 3.683 14 O -0.446 6.446 15 C -0.282 4.282 16 S 0.074 5.926 17 C -0.696 4.696 18 H 0.101 0.899 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.819 3.181 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.186 1.186 25 S 0.526 5.474 26 H 0.187 0.813 27 H 0.183 0.817 28 H 0.072 0.928 29 H 0.123 0.877 30 H 0.165 0.835 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.254 0.746 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -27.479 -19.609 2.648 33.862 hybrid contribution -0.107 0.972 -1.869 2.109 sum -27.585 -18.637 0.780 33.300 Atomic orbital electron populations 1.81340 1.12681 1.10255 1.09456 1.24618 0.91335 0.92505 0.92706 1.20447 0.88216 1.14057 1.09060 1.21026 0.92251 0.96988 0.97680 1.20115 0.96225 1.01140 0.98782 1.24326 1.00495 1.03875 1.02107 1.20495 0.89106 0.94949 0.95987 1.60471 1.03564 1.07650 1.60244 1.21799 0.89979 0.97347 0.97305 1.21603 0.93227 0.98262 1.02092 1.21338 0.96510 0.86499 0.96002 1.45748 1.15134 1.30401 1.45396 1.20067 0.81999 0.84469 0.81732 1.90691 1.54101 1.62574 1.37273 1.23383 1.01913 0.98897 1.03981 1.85570 1.12772 1.36198 1.58049 1.23188 1.04414 1.13828 1.28148 0.89871 1.26109 0.94397 1.01419 0.97079 1.70181 1.05848 1.41157 1.37621 0.85019 0.77682 0.77006 0.78383 1.18669 1.20443 1.18636 1.83291 0.92568 1.43003 1.28570 0.81276 0.81684 0.92816 0.87706 0.83471 0.94180 0.90193 0.89735 0.90071 0.92521 0.92398 0.74597 0.87173 0.87181 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.38 18.54 19.00 0.35 -9.02 16 2 C 0.30 4.52 15.83 88.33 1.40 5.92 16 3 C -0.20 -1.84 6.32 23.14 0.15 -1.69 16 4 C -0.04 -0.25 10.24 21.75 0.22 -0.03 16 5 C -0.13 -0.66 10.00 21.10 0.21 -0.45 16 6 C -0.19 -1.03 5.79 24.66 0.14 -0.89 16 7 C 0.12 0.60 6.11 85.55 0.52 1.13 16 8 N -0.69 -4.57 6.49 -517.93 -3.36 -7.93 16 9 C 0.07 0.52 5.68 86.31 0.49 1.02 16 10 C -0.11 -1.13 5.59 30.60 0.17 -0.95 16 11 C 0.12 2.23 5.67 86.38 0.49 2.72 16 12 N -0.71 -16.16 5.56 -463.06 -2.57 -18.74 16 13 C 0.53 18.84 7.85 87.65 0.69 19.53 16 14 O -0.57 -25.71 15.86 -3.04 -0.05 -25.76 16 15 C -0.13 -5.01 6.16 71.23 0.44 -4.57 16 16 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 17 C -0.55 -30.98 9.50 67.95 0.65 -30.34 16 18 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 19 C 0.01 0.83 5.49 84.86 0.47 1.30 16 20 N -0.91 -55.67 13.22 21.65 0.29 -55.39 16 21 Si 1.00 43.04 29.55 68.60 2.03 45.07 16 22 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 23 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 S 0.26 1.67 23.01 -56.49 -1.30 0.37 16 26 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 27 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 28 H 0.05 0.21 8.14 -2.38 -0.02 0.19 16 29 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.35 1.94 8.72 -89.69 -0.78 1.16 16 31 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 37 H 0.42 6.49 8.47 -92.71 -0.79 5.71 16 38 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 39 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 40 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 Total: -1.00 -79.74 385.20 -0.23 -79.97 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -0.48 Total: 8.32 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 6.03 Total: -7.32 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -5.30 Total: -91.08 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.05 Total: -25.76 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -6.74 SS G_CDS: -2.46 Total: -9.20 kcal Total: -79.74 -0.23 -79.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154803265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.803 kcal (2) G-P(sol) polarization free energy of solvation -79.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds