Wall clock time and date at job start Tue Mar 31 2020 22:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99958 * 2 1 4 4 H 1.48495 * 109.47542 * 239.99870 * 3 2 1 5 5 H 1.48500 * 109.47237 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46819 * 120.00064 * 3 2 1 7 7 C 1.37874 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00286 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99728 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50113 * 299.99686 * 9 7 2 11 11 C 1.53120 * 109.50644 * 60.07730 * 9 7 2 12 12 C 1.53120 * 109.15953 * 177.63531 * 11 9 7 13 13 C 1.53040 * 109.27991 * 302.34572 * 12 11 9 14 14 N 1.46843 * 109.52069 * 59.17842 * 13 12 11 15 15 C 1.38380 * 110.99500 * 174.16376 * 14 13 12 16 16 N 1.32485 * 119.91480 * 36.59504 * 15 14 13 17 17 C 1.31982 * 122.09011 * 179.97438 * 16 15 14 18 18 Cl 1.73601 * 119.47689 * 180.02562 * 17 16 15 19 19 C 1.39025 * 121.04332 * 359.97438 * 17 16 15 20 20 F 1.35097 * 120.48341 * 180.02562 * 19 17 16 21 21 C 1.37695 * 119.03819 * 0.02562 * 19 17 16 22 22 C 1.40071 * 119.11608 * 359.74747 * 21 19 17 23 23 C 1.46865 * 108.25499 * 180.30458 * 22 21 19 24 24 O 1.21613 * 124.80231 * 180.18637 * 23 22 21 25 25 N 1.34484 * 110.39448 * 0.20143 * 23 22 21 26 26 C 1.46833 * 108.75019 * 359.56752 * 25 23 22 27 27 C 1.46931 * 111.22430 * 298.25387 * 14 13 12 28 28 H 0.97008 * 119.99953 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.51899 * 297.53825 * 11 9 7 30 30 H 1.08996 * 109.52328 * 57.66442 * 11 9 7 31 31 H 1.09003 * 109.50375 * 62.28829 * 12 11 9 32 32 H 1.08999 * 109.50179 * 182.39953 * 12 11 9 33 33 H 1.08996 * 109.46078 * 179.20051 * 13 12 11 34 34 H 1.09005 * 109.45805 * 299.16528 * 13 12 11 35 35 H 0.97005 * 125.62094 * 179.97438 * 25 23 22 36 36 H 1.09000 * 110.61590 * 241.05443 * 26 25 23 37 37 H 1.08998 * 109.63006 * 119.39568 * 26 25 23 38 38 H 1.08994 * 109.45243 * 301.74040 * 27 14 13 39 39 H 1.08997 * 109.51423 * 181.73830 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6238 -2.5580 0.8878 11 6 0.3723 -2.5810 -1.2530 12 6 -0.3441 -3.9341 -1.2763 13 6 0.6953 -5.0569 -1.2422 14 7 1.5097 -4.9348 -0.0264 15 6 2.3732 -6.0085 0.1018 16 7 2.9353 -6.5366 -0.9754 17 6 3.7652 -7.5603 -0.9029 18 17 4.4638 -8.1985 -2.3584 19 6 4.0896 -8.1350 0.3208 20 9 4.9408 -9.1822 0.3820 21 6 3.5306 -7.6212 1.4695 22 6 2.6558 -6.5315 1.3735 23 6 2.2113 -6.1777 2.7278 24 8 1.4417 -5.2738 2.9917 25 7 2.7761 -6.9944 3.6348 26 6 3.6322 -7.9590 2.9329 27 6 2.2449 -3.6629 -0.0041 28 1 -0.4850 0.8401 0.0004 29 1 -0.3652 -1.7787 -1.2333 30 1 0.9947 -2.4820 -2.1423 31 1 -0.9964 -4.0156 -0.4068 32 1 -0.9382 -4.0157 -2.1865 33 1 0.1880 -6.0216 -1.2443 34 1 1.3385 -4.9830 -2.1192 35 1 2.6359 -6.9565 4.5939 36 1 3.2859 -8.9776 3.1075 37 1 4.6621 -7.8493 3.2724 38 1 2.8807 -3.5956 -0.8868 39 1 2.8624 -3.6149 0.8928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166743676.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:05 Heat of formation + Delta-G solvation = -19.224775 kcal Electronic energy + Delta-G solvation = -27551.118585 eV Core-core repulsion = 23434.790916 eV Total energy + Delta-G solvation = -4116.327669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.089 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.31734 -41.69258 -39.41907 -38.06255 -36.99788 -36.16995 -33.85397 -32.11867 -31.97890 -29.98473 -29.39843 -27.52344 -25.03782 -24.88711 -23.64385 -22.27320 -21.36516 -20.70553 -18.92397 -18.29969 -17.67759 -17.39465 -16.68926 -16.50512 -16.31930 -15.75426 -15.55994 -15.10828 -14.77183 -14.36431 -13.97734 -13.73226 -13.56080 -13.45330 -13.38897 -13.23710 -12.75027 -12.52881 -12.38327 -11.82751 -11.74281 -11.65602 -10.92885 -10.80552 -10.73841 -10.48632 -10.24171 -10.15457 -9.94753 -9.83876 -9.59340 -9.38287 -9.25395 -9.00374 -8.76033 -8.29880 -8.07222 -5.95908 -4.02317 0.05880 0.49616 1.27632 2.50676 2.81376 3.34416 3.35247 3.38959 3.41419 3.44747 3.61771 3.77289 3.96237 4.21721 4.46359 4.72024 4.82796 4.84754 5.03177 5.24224 5.34439 5.55245 5.73132 5.78860 6.00721 6.15547 6.27138 6.42254 6.45174 6.62972 6.68604 6.75967 6.84823 6.99983 7.24811 7.33725 7.44521 7.61653 7.76710 8.08259 8.13331 8.16248 8.44770 9.00065 9.61550 11.10257 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.013218 B = 0.003796 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.868020 B = 7375.216525 C = 8244.388836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.066 3.934 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.057 3.943 10 H 0.042 0.958 11 C -0.112 4.112 12 C -0.118 4.118 13 C 0.064 3.936 14 N -0.470 5.470 15 C 0.399 3.601 16 N -0.486 5.486 17 C 0.196 3.804 18 Cl -0.004 7.004 19 C 0.058 3.942 20 F -0.116 7.116 21 C -0.064 4.064 22 C -0.168 4.168 23 C 0.566 3.434 24 O -0.473 6.473 25 N -0.729 5.729 26 C 0.153 3.847 27 C 0.080 3.920 28 H 0.261 0.739 29 H 0.095 0.905 30 H 0.033 0.967 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.429 0.571 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.037 0.963 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.676 -20.280 2.574 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.071 0.929 9 C 0.039 3.961 10 H 0.060 0.940 11 C -0.150 4.150 12 C -0.156 4.156 13 C -0.062 4.062 14 N -0.191 5.191 15 C 0.168 3.832 16 N -0.202 5.202 17 C 0.026 3.974 18 Cl 0.024 6.976 19 C 0.033 3.967 20 F -0.095 7.095 21 C -0.074 4.074 22 C -0.176 4.176 23 C 0.351 3.649 24 O -0.345 6.345 25 N -0.390 5.390 26 C 0.029 3.971 27 C -0.043 4.043 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.271 0.729 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.055 0.945 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.625 -19.288 2.103 20.502 hybrid contribution 1.422 0.125 0.213 1.444 sum 8.047 -19.163 2.316 20.913 Atomic orbital electron populations 1.69876 1.05816 1.26503 1.50253 1.24894 0.94826 0.98879 0.94994 0.86674 0.79614 0.83229 0.78549 1.20351 1.21268 1.20313 1.21012 0.92735 0.90400 1.51296 0.92882 1.18697 0.92472 0.89548 0.95432 0.93953 1.21695 1.00165 0.94746 0.98441 1.21715 0.97029 0.96048 1.00795 1.22122 0.95266 0.99344 0.89482 1.59934 1.19068 1.00982 1.39073 1.19770 0.86481 0.91381 0.85528 1.67547 1.08932 1.10109 1.33566 1.21772 0.95211 0.93137 0.87293 1.98442 1.80864 1.83474 1.34784 1.16894 0.97293 0.91058 0.91406 1.91554 1.67449 1.53641 1.96833 1.20551 0.95599 0.95663 0.95568 1.20882 1.02402 0.98442 0.95875 1.17597 0.80916 0.82066 0.84326 1.90980 1.32358 1.28460 1.82653 1.45789 1.49188 1.34270 1.09723 1.20267 0.97067 0.94440 0.85365 1.22523 0.96677 0.85393 0.99710 0.92931 0.88708 0.94770 0.91773 0.92757 0.92174 0.93053 0.72854 0.87528 0.87625 0.94509 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 11.36 55.43 0.63 -24.71 16 2 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.22 8.56 -34.44 -0.29 -14.52 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.06 1.46 2.26 -91.69 -0.21 1.25 16 10 H 0.04 1.22 8.14 -51.93 -0.42 0.79 16 11 C -0.11 -2.66 5.03 -26.61 -0.13 -2.79 16 12 C -0.12 -2.32 6.09 -26.65 -0.16 -2.49 16 13 C 0.06 1.18 4.93 -3.83 -0.02 1.17 16 14 N -0.47 -9.23 4.47 -172.94 -0.77 -10.00 16 15 C 0.40 6.82 5.59 -155.08 -0.87 5.96 16 16 N -0.49 -7.75 9.20 -9.19 -0.08 -7.83 16 17 C 0.20 2.61 7.29 -17.20 -0.13 2.49 16 18 Cl 0.00 -0.05 28.77 -51.86 -1.49 -1.54 16 19 C 0.06 0.66 7.29 -39.49 -0.29 0.37 16 20 F -0.12 -1.17 16.85 2.25 0.04 -1.13 16 21 C -0.06 -0.71 6.43 -104.22 -0.67 -1.38 16 22 C -0.17 -2.51 6.23 -104.91 -0.65 -3.16 16 23 C 0.57 8.65 8.31 -12.90 -0.11 8.54 16 24 O -0.47 -9.50 17.91 5.27 0.09 -9.41 16 25 N -0.73 -7.01 6.42 -62.68 -0.40 -7.41 16 26 C 0.15 1.10 7.76 -5.10 -0.04 1.06 16 27 C 0.08 1.77 4.62 -3.78 -0.02 1.75 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.09 2.49 6.16 -51.93 -0.32 2.17 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.01 8.10 -51.93 -0.42 0.58 16 34 H 0.05 0.95 7.80 -51.93 -0.40 0.54 16 35 H 0.43 3.01 8.96 -40.82 -0.37 2.64 16 36 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.44 8.10 -51.93 -0.42 1.02 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -31.48 343.69 -9.94 -41.42 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -4.43 Total: -0.90 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -3.68 Total: -0.02 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -0.63 Total: -49.95 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.49 Total: -1.54 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.48 -9.94 -41.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166743676.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.194 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds