Wall clock time and date at job start Tue Mar 31 2020 22:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99958 * 2 1 4 4 H 1.48495 * 109.47542 * 239.99870 * 3 2 1 5 5 H 1.48500 * 109.47237 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46819 * 120.00064 * 3 2 1 7 7 C 1.37874 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00286 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99728 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50113 * 299.99686 * 9 7 2 11 11 C 1.53120 * 109.50644 * 60.07730 * 9 7 2 12 12 C 1.53120 * 109.15953 * 177.63531 * 11 9 7 13 13 C 1.53040 * 109.27991 * 302.34572 * 12 11 9 14 14 N 1.46843 * 109.52069 * 59.17842 * 13 12 11 15 15 C 1.38380 * 110.99500 * 174.16376 * 14 13 12 16 16 N 1.32485 * 119.91480 * 36.59504 * 15 14 13 17 17 C 1.31982 * 122.09011 * 179.97438 * 16 15 14 18 18 Cl 1.73601 * 119.47689 * 180.02562 * 17 16 15 19 19 C 1.39025 * 121.04332 * 359.97438 * 17 16 15 20 20 F 1.35097 * 120.48341 * 180.02562 * 19 17 16 21 21 C 1.37695 * 119.03819 * 0.02562 * 19 17 16 22 22 C 1.40071 * 119.11608 * 359.74747 * 21 19 17 23 23 C 1.46865 * 108.25499 * 180.30458 * 22 21 19 24 24 O 1.21613 * 124.80231 * 180.18637 * 23 22 21 25 25 N 1.34484 * 110.39448 * 0.20143 * 23 22 21 26 26 C 1.46833 * 108.75019 * 359.56752 * 25 23 22 27 27 C 1.46931 * 111.22430 * 298.25387 * 14 13 12 28 28 H 0.97008 * 119.99953 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.51899 * 297.53825 * 11 9 7 30 30 H 1.08996 * 109.52328 * 57.66442 * 11 9 7 31 31 H 1.09003 * 109.50375 * 62.28829 * 12 11 9 32 32 H 1.08999 * 109.50179 * 182.39953 * 12 11 9 33 33 H 1.08996 * 109.46078 * 179.20051 * 13 12 11 34 34 H 1.09005 * 109.45805 * 299.16528 * 13 12 11 35 35 H 0.97005 * 125.62094 * 179.97438 * 25 23 22 36 36 H 1.09000 * 110.61590 * 241.05443 * 26 25 23 37 37 H 1.08998 * 109.63006 * 119.39568 * 26 25 23 38 38 H 1.08994 * 109.45243 * 301.74040 * 27 14 13 39 39 H 1.08997 * 109.51423 * 181.73830 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6238 -2.5580 0.8878 11 6 0.3723 -2.5810 -1.2530 12 6 -0.3441 -3.9341 -1.2763 13 6 0.6953 -5.0569 -1.2422 14 7 1.5097 -4.9348 -0.0264 15 6 2.3732 -6.0085 0.1018 16 7 2.9353 -6.5366 -0.9754 17 6 3.7652 -7.5603 -0.9029 18 17 4.4638 -8.1985 -2.3584 19 6 4.0896 -8.1350 0.3208 20 9 4.9408 -9.1822 0.3820 21 6 3.5306 -7.6212 1.4695 22 6 2.6558 -6.5315 1.3735 23 6 2.2113 -6.1777 2.7278 24 8 1.4417 -5.2738 2.9917 25 7 2.7761 -6.9944 3.6348 26 6 3.6322 -7.9590 2.9329 27 6 2.2449 -3.6629 -0.0041 28 1 -0.4850 0.8401 0.0004 29 1 -0.3652 -1.7787 -1.2333 30 1 0.9947 -2.4820 -2.1423 31 1 -0.9964 -4.0156 -0.4068 32 1 -0.9382 -4.0157 -2.1865 33 1 0.1880 -6.0216 -1.2443 34 1 1.3385 -4.9830 -2.1192 35 1 2.6359 -6.9565 4.5939 36 1 3.2859 -8.9776 3.1075 37 1 4.6621 -7.8493 3.2724 38 1 2.8807 -3.5956 -0.8868 39 1 2.8624 -3.6149 0.8928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166743676.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:05 Heat of formation + Delta-G solvation = -41.387158 kcal Electronic energy + Delta-G solvation = -27552.079618 eV Core-core repulsion = 23434.790916 eV Total energy + Delta-G solvation = -4117.288702 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.089 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.21624 -42.77086 -40.64852 -39.45176 -38.02806 -37.34580 -35.62549 -33.75041 -33.10230 -31.82131 -30.67942 -28.39931 -27.01501 -26.19975 -24.83400 -23.70251 -23.00973 -21.77484 -20.59145 -19.44784 -18.99871 -18.52562 -18.01852 -17.62762 -17.42839 -17.17533 -16.60989 -16.45088 -16.16986 -15.96904 -15.25416 -15.00044 -14.98158 -14.64774 -14.45127 -14.40300 -14.27586 -14.13716 -13.97951 -13.40416 -12.94509 -12.85480 -12.73100 -12.63492 -12.56200 -11.94136 -11.84248 -11.65026 -11.49842 -11.19265 -11.14058 -11.01035 -10.76084 -10.47757 -10.36157 -10.15011 -9.48339 -8.08740 -6.23577 -1.01907 -0.52488 0.27339 1.39242 1.41513 1.43326 1.50865 1.94951 2.19975 2.37173 2.45679 2.52603 2.78764 2.97370 3.17923 3.18560 3.59348 3.87412 4.07246 4.13073 4.18079 4.28201 4.38652 4.41832 4.46188 4.57137 4.75392 4.82148 4.83225 4.97835 5.06636 5.27114 5.43250 5.51647 5.60905 5.67543 5.93210 5.96737 6.10428 6.12295 6.22114 6.35674 6.85857 7.13171 7.43817 8.96341 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.013218 B = 0.003796 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.868020 B = 7375.216525 C = 8244.388836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.018 3.982 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.051 0.949 9 C 0.058 3.942 10 H -0.004 1.004 11 C -0.103 4.103 12 C -0.109 4.109 13 C 0.072 3.928 14 N -0.485 5.485 15 C 0.373 3.627 16 N -0.504 5.504 17 C 0.185 3.815 18 Cl 0.010 6.990 19 C 0.079 3.921 20 F -0.100 7.100 21 C -0.042 4.042 22 C -0.189 4.189 23 C 0.557 3.443 24 O -0.541 6.541 25 N -0.704 5.704 26 C 0.152 3.848 27 C 0.102 3.898 28 H 0.262 0.738 29 H 0.064 0.936 30 H 0.030 0.970 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.443 0.557 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.031 0.969 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.846 -23.018 3.005 25.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.069 0.931 9 C 0.039 3.961 10 H 0.015 0.985 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.054 4.054 14 N -0.205 5.205 15 C 0.143 3.857 16 N -0.219 5.219 17 C 0.016 3.984 18 Cl 0.039 6.961 19 C 0.055 3.945 20 F -0.078 7.078 21 C -0.052 4.052 22 C -0.198 4.198 23 C 0.343 3.657 24 O -0.418 6.418 25 N -0.363 5.363 26 C 0.029 3.971 27 C -0.022 4.022 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.288 0.712 36 H 0.171 0.829 37 H 0.165 0.835 38 H 0.049 0.951 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.844 -22.108 2.559 23.949 hybrid contribution 0.868 0.777 0.105 1.170 sum 9.713 -21.331 2.664 23.589 Atomic orbital electron populations 1.70027 1.07183 1.27280 1.50670 1.25698 0.95681 1.02285 0.94501 0.85647 0.78439 0.78963 0.78808 1.19431 1.20664 1.19851 1.21370 0.92874 0.91871 1.51643 0.93110 1.18549 0.92724 0.90608 0.94196 0.98533 1.21475 0.99224 0.96202 0.97234 1.21610 0.97207 0.94383 1.01518 1.22044 0.94734 0.99418 0.89201 1.59750 1.20187 1.00766 1.39837 1.19623 0.87768 0.91464 0.86814 1.67379 1.09826 1.11247 1.33463 1.22008 0.94939 0.92861 0.88637 1.98448 1.80403 1.83034 1.34247 1.16695 0.96486 0.90634 0.90709 1.91609 1.66756 1.52731 1.96700 1.20881 0.93212 0.93454 0.97645 1.20946 1.03722 0.99970 0.95121 1.17862 0.80575 0.81962 0.85337 1.90949 1.35675 1.31558 1.83577 1.45748 1.47613 1.32962 1.10016 1.20827 0.98780 0.95461 0.82027 1.22006 0.95422 0.86203 0.98594 0.92907 0.91707 0.95129 0.93163 0.89981 0.90118 0.93116 0.71165 0.82942 0.83516 0.95060 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.38 11.36 21.44 0.24 -54.14 16 2 C 0.02 1.01 5.30 84.65 0.45 1.46 16 3 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -31.14 8.56 25.60 0.22 -30.92 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.06 3.15 2.26 -11.49 -0.03 3.12 16 10 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 11 C -0.10 -5.14 5.03 30.67 0.15 -4.98 16 12 C -0.11 -4.45 6.09 30.65 0.19 -4.26 16 13 C 0.07 2.70 4.93 86.33 0.43 3.13 16 14 N -0.48 -19.77 4.47 -701.05 -3.13 -22.91 16 15 C 0.37 12.83 5.59 133.56 0.75 13.57 16 16 N -0.50 -15.70 9.20 -182.98 -1.68 -17.38 16 17 C 0.18 4.57 7.29 84.86 0.62 5.19 16 18 Cl 0.01 0.21 28.77 -2.72 -0.08 0.13 16 19 C 0.08 1.53 7.29 22.33 0.16 1.70 16 20 F -0.10 -1.55 16.85 44.97 0.76 -0.79 16 21 C -0.04 -0.79 6.43 -19.60 -0.13 -0.92 16 22 C -0.19 -5.51 6.23 -20.05 -0.12 -5.63 16 23 C 0.56 16.88 8.31 86.55 0.72 17.60 16 24 O -0.54 -22.85 17.91 -4.07 -0.07 -22.93 16 25 N -0.70 -11.53 6.42 -470.64 -3.02 -14.55 16 26 C 0.15 1.38 7.76 85.52 0.66 2.05 16 27 C 0.10 4.77 4.62 86.31 0.40 5.17 16 28 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 29 H 0.06 3.60 6.16 -2.39 -0.01 3.59 16 30 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.08 2.67 8.10 -2.39 -0.02 2.65 16 34 H 0.05 1.88 7.80 -2.38 -0.02 1.87 16 35 H 0.44 4.94 8.96 -92.70 -0.83 4.11 16 36 H 0.15 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.15 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.05 2.39 8.10 -2.39 -0.02 2.37 16 Total: -1.00 -74.89 343.69 -0.21 -75.09 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 0.29 Total: 4.38 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 4.47 Total: 6.27 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -7.59 Total: -108.98 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.07 Total: -22.93 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.76 Total: -0.79 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 17 Polarization: 0.21 SS G_CDS: -0.08 Total: 0.13 kcal Total: -74.89 -0.21 -75.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166743676.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.703 kcal (2) G-P(sol) polarization free energy of solvation -74.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds