Wall clock time and date at job start Tue Mar 31 2020 22:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00361 * 2 1 4 4 H 1.48500 * 109.47027 * 240.00179 * 3 2 1 5 5 H 1.48503 * 109.47108 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47324 * 120.00009 * 3 2 1 7 7 C 1.37878 * 119.99489 * 179.97438 * 2 1 3 8 8 C 1.51275 * 120.84659 * 180.02562 * 7 2 1 9 9 C 1.53224 * 108.53480 * 231.32469 * 8 7 2 10 10 C 1.52961 * 109.40699 * 305.37544 * 9 8 7 11 11 H 1.08999 * 109.40726 * 303.56178 * 10 9 8 12 12 N 1.46496 * 109.41354 * 183.70454 * 10 9 8 13 13 C 1.34780 * 119.99759 * 154.99424 * 12 10 9 14 14 O 1.21554 * 120.00490 * 0.02562 * 13 12 10 15 15 C 1.47849 * 119.99842 * 179.97438 * 13 12 10 16 16 C 1.39595 * 120.14545 * 311.75089 * 15 13 12 17 17 C 1.37940 * 119.85000 * 179.74746 * 16 15 13 18 18 C 1.38383 * 120.14680 * 0.52893 * 17 16 15 19 19 C 1.38342 * 120.28866 * 359.74314 * 18 17 16 20 20 C 1.37979 * 120.14711 * 359.97438 * 19 18 17 21 21 S 1.76198 * 120.07248 * 180.02562 * 20 19 18 22 22 O 1.42105 * 106.40222 * 16.68992 * 21 20 19 23 23 O 1.42100 * 106.40184 * 149.61258 * 21 20 19 24 24 O 1.52197 * 107.21919 * 263.15144 * 21 20 19 25 25 C 1.52953 * 109.81791 * 63.59402 * 10 9 8 26 26 C 1.51269 * 120.85086 * 359.97438 * 7 2 1 27 27 H 0.97007 * 119.99710 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.62275 * 111.61073 * 8 7 2 29 29 H 1.09001 * 109.62264 * 351.03962 * 8 7 2 30 30 H 1.08999 * 109.48340 * 185.39258 * 9 8 7 31 31 H 1.09005 * 109.48494 * 65.35077 * 9 8 7 32 32 H 0.96996 * 120.00409 * 334.99390 * 12 10 9 33 33 H 1.07995 * 120.07561 * 0.02562 * 16 15 13 34 34 H 1.08000 * 119.92831 * 180.27939 * 17 16 15 35 35 H 1.08001 * 119.85373 * 179.76990 * 18 17 16 36 36 H 1.08000 * 119.92343 * 179.97438 * 19 18 17 37 37 H 0.96697 * 114.00389 * 179.97438 * 24 21 20 38 38 H 1.08997 * 109.48365 * 56.38728 * 25 10 9 39 39 H 1.09003 * 109.48250 * 176.42308 * 25 10 9 40 40 H 1.08994 * 109.62453 * 8.95719 * 26 7 2 41 41 H 1.08997 * 109.78174 * 248.47982 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 6 3.5170 -1.2166 0.0011 9 6 3.9910 -2.1318 -1.1327 10 6 3.3401 -3.5077 -0.9810 11 1 3.5727 -3.9118 0.0042 12 7 3.8604 -4.4089 -2.0122 13 6 3.8531 -5.7412 -1.8088 14 8 3.4145 -6.1952 -0.7700 15 6 4.3777 -6.6507 -2.8497 16 6 3.9758 -6.5017 -4.1782 17 6 4.4730 -7.3504 -5.1453 18 6 5.3599 -8.3547 -4.7992 19 6 5.7578 -8.5113 -3.4835 20 6 5.2724 -7.6655 -2.5074 21 16 5.7811 -7.8664 -0.8324 22 8 6.9461 -8.6796 -0.8616 23 8 5.7510 -6.5724 -0.2460 24 8 4.7053 -8.6819 -0.1296 25 6 1.8232 -3.3833 -1.1327 26 6 1.2675 -2.5152 0.0017 27 1 -0.4850 0.8401 0.0004 28 1 3.8770 -1.5999 0.9558 29 1 3.8982 -0.2080 -0.1589 30 1 5.0751 -2.2355 -1.0871 31 1 3.7070 -1.6992 -2.0920 32 1 4.2100 -4.0468 -2.8413 33 1 3.2806 -5.7209 -4.4490 34 1 4.1664 -7.2333 -6.1742 35 1 5.7434 -9.0188 -5.5596 36 1 6.4499 -9.2974 -3.2200 37 1 4.8879 -8.8517 0.8047 38 1 1.5905 -2.9210 -2.0920 39 1 1.3708 -4.3740 -1.0871 40 1 0.2035 -2.3409 -0.1578 41 1 1.4168 -3.0200 0.9561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189700308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:37 Heat of formation + Delta-G solvation = -138.227869 kcal Electronic energy + Delta-G solvation = -27895.058898 eV Core-core repulsion = 23866.782127 eV Total energy + Delta-G solvation = -4028.276770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.33842 -38.69105 -38.30430 -37.35202 -36.57243 -35.98260 -33.76982 -32.07834 -31.75977 -31.07371 -29.59872 -27.31946 -24.40917 -23.63933 -22.08048 -21.63308 -21.16513 -20.25390 -19.59086 -18.47138 -18.44041 -17.41592 -16.64462 -16.06984 -15.87586 -15.67506 -15.35376 -15.05029 -14.61684 -14.41843 -14.11843 -13.73151 -13.29147 -13.15456 -13.06570 -12.81569 -12.76509 -12.42014 -12.18486 -12.12703 -12.07843 -12.04364 -11.88601 -11.60114 -11.09348 -10.97702 -10.77442 -10.71432 -10.33288 -9.93020 -9.88384 -9.73861 -9.63877 -9.38580 -9.06811 -8.81016 -8.46025 -8.28920 -6.08510 -3.99502 0.11984 0.44499 0.73324 2.71272 2.88084 3.18580 3.28169 3.30979 3.36215 3.37374 3.46770 4.16335 4.39217 4.50346 4.55747 4.63288 4.89469 5.06540 5.17233 5.18944 5.41589 5.61258 5.71327 5.72261 5.81874 5.88500 5.92341 6.21901 6.33257 6.50375 6.51609 6.73665 6.78252 6.82954 7.00439 7.10636 7.24378 7.41843 7.65488 7.75236 7.82253 7.89181 8.40828 8.43446 8.98495 9.55665 11.01173 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019577 B = 0.003194 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.942629 B = 8764.876328 C = 9327.429608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.490 4.490 8 C -0.007 4.007 9 C -0.114 4.114 10 C 0.154 3.846 11 H 0.087 0.913 12 N -0.705 5.705 13 C 0.544 3.456 14 O -0.515 6.515 15 C -0.017 4.017 16 C -0.113 4.113 17 C -0.063 4.063 18 C -0.130 4.130 19 C -0.022 4.022 20 C -0.635 4.635 21 S 2.717 3.283 22 O -0.980 6.980 23 O -0.942 6.942 24 O -0.879 6.879 25 C -0.115 4.115 26 C 0.012 3.988 27 H 0.265 0.735 28 H 0.023 0.977 29 H 0.028 0.972 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.394 0.606 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.149 0.851 37 H 0.457 0.543 38 H 0.049 0.951 39 H 0.035 0.965 40 H 0.058 0.942 41 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.150 -17.330 -10.015 22.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.509 4.509 8 C -0.046 4.046 9 C -0.152 4.152 10 C 0.052 3.948 11 H 0.105 0.895 12 N -0.353 5.353 13 C 0.328 3.672 14 O -0.392 6.392 15 C -0.021 4.021 16 C -0.133 4.133 17 C -0.081 4.081 18 C -0.149 4.149 19 C -0.041 4.041 20 C -0.722 4.722 21 S 2.806 3.194 22 O -0.979 6.979 23 O -0.941 6.941 24 O -0.748 6.748 25 C -0.154 4.154 26 C -0.026 4.026 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.227 0.773 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.166 0.834 37 H 0.326 0.674 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 10.744 -17.473 -9.152 22.461 hybrid contribution 0.446 1.085 -0.942 1.504 sum 11.191 -16.388 -10.093 22.264 Atomic orbital electron populations 1.69834 1.06161 1.26996 1.49757 1.24842 0.94722 0.98499 0.94583 0.86658 0.79378 0.83042 0.78965 1.20050 1.21910 1.19974 1.20049 0.89232 0.91612 1.49961 1.19580 0.96814 0.94396 0.93759 1.21861 0.97165 0.94690 1.01520 1.21151 0.94610 0.88382 0.90658 0.89541 1.46208 1.62320 1.05242 1.21528 1.18119 0.79669 0.83300 0.86152 1.90824 1.46281 1.76010 1.26059 1.19933 0.93488 0.93634 0.95070 1.21502 1.00190 1.00272 0.91298 1.21491 0.93833 0.92932 0.99830 1.21454 0.98214 0.98799 0.96435 1.20987 0.95091 0.95486 0.92500 1.30560 1.11781 1.05553 1.24268 1.00752 0.70954 0.73426 0.74311 1.93610 1.48133 1.69173 1.86992 1.93723 1.84743 1.41246 1.74387 1.85493 1.69959 1.82314 1.37024 1.21995 0.93218 0.98562 1.01582 1.19345 0.98578 0.92600 0.92029 0.92553 0.95897 0.95395 0.94076 0.92590 0.77286 0.84024 0.84411 0.84482 0.83372 0.67401 0.93268 0.94613 0.92347 0.97468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 12.73 55.43 0.71 -24.90 16 2 C 0.08 2.08 5.46 -17.82 -0.10 1.98 16 3 Si 0.89 21.11 26.80 -169.99 -4.56 16.55 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.49 -12.89 5.51 -98.92 -0.55 -13.44 16 8 C -0.01 -0.17 5.59 -27.49 -0.15 -0.33 16 9 C -0.11 -2.26 5.40 -26.64 -0.14 -2.40 16 10 C 0.15 3.10 2.35 -67.98 -0.16 2.94 16 11 H 0.09 1.95 7.58 -51.93 -0.39 1.56 16 12 N -0.70 -11.67 5.03 -54.79 -0.28 -11.94 16 13 C 0.54 9.26 5.67 -12.33 -0.07 9.19 16 14 O -0.51 -10.34 13.82 -21.23 -0.29 -10.63 16 15 C -0.02 -0.22 5.68 -104.97 -0.60 -0.82 16 16 C -0.11 -1.15 9.55 -39.18 -0.37 -1.53 16 17 C -0.06 -0.48 10.03 -39.64 -0.40 -0.88 16 18 C -0.13 -0.98 10.04 -39.49 -0.40 -1.38 16 19 C -0.02 -0.21 9.52 -39.64 -0.38 -0.58 16 20 C -0.63 -7.81 5.98 -39.19 -0.23 -8.04 16 21 S 2.72 33.96 5.23 -107.50 -0.56 33.40 16 22 O -0.98 -12.84 17.12 -66.81 -1.14 -13.98 16 23 O -0.94 -15.54 14.63 -70.45 -1.03 -16.57 16 24 O -0.88 -9.27 12.96 -68.60 -0.89 -10.16 16 25 C -0.11 -2.52 5.50 -26.61 -0.15 -2.66 16 26 C 0.01 0.32 5.97 -27.46 -0.16 0.15 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.03 0.63 5.17 -51.93 -0.27 0.36 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.39 5.22 8.41 -40.82 -0.34 4.88 16 33 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 35 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.15 1.13 7.48 -52.49 -0.39 0.73 16 37 H 0.46 2.31 9.03 67.38 0.61 2.92 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 41 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 347.99 15.07 5.24 5.24 Total: -1.00 -36.92 347.99 -10.75 -47.68 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -4.10 Total: 3.13 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -3.86 Total: -17.80 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.43 Total: -36.85 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -3.36 Total: -51.35 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.56 Total: 16.55 kcal Atomic # 16 Polarization: 33.96 SS G_CDS: -0.56 Total: 33.40 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.92 -10.75 -47.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189700308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.551 kcal (2) G-P(sol) polarization free energy of solvation -36.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds