Wall clock time and date at job start Tue Mar 31 2020 22:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00361 * 2 1 4 4 H 1.48500 * 109.47027 * 240.00179 * 3 2 1 5 5 H 1.48503 * 109.47108 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47324 * 120.00009 * 3 2 1 7 7 C 1.37878 * 119.99489 * 179.97438 * 2 1 3 8 8 C 1.51275 * 120.84659 * 180.02562 * 7 2 1 9 9 C 1.53224 * 108.53480 * 231.32469 * 8 7 2 10 10 C 1.52961 * 109.40699 * 305.37544 * 9 8 7 11 11 H 1.08999 * 109.40726 * 303.56178 * 10 9 8 12 12 N 1.46496 * 109.41354 * 183.70454 * 10 9 8 13 13 C 1.34780 * 119.99759 * 154.99424 * 12 10 9 14 14 O 1.21554 * 120.00490 * 0.02562 * 13 12 10 15 15 C 1.47849 * 119.99842 * 179.97438 * 13 12 10 16 16 C 1.39595 * 120.14545 * 311.75089 * 15 13 12 17 17 C 1.37940 * 119.85000 * 179.74746 * 16 15 13 18 18 C 1.38383 * 120.14680 * 0.52893 * 17 16 15 19 19 C 1.38342 * 120.28866 * 359.74314 * 18 17 16 20 20 C 1.37979 * 120.14711 * 359.97438 * 19 18 17 21 21 S 1.76198 * 120.07248 * 180.02562 * 20 19 18 22 22 O 1.42105 * 106.40222 * 16.68992 * 21 20 19 23 23 O 1.42100 * 106.40184 * 149.61258 * 21 20 19 24 24 O 1.52197 * 107.21919 * 263.15144 * 21 20 19 25 25 C 1.52953 * 109.81791 * 63.59402 * 10 9 8 26 26 C 1.51269 * 120.85086 * 359.97438 * 7 2 1 27 27 H 0.97007 * 119.99710 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.62275 * 111.61073 * 8 7 2 29 29 H 1.09001 * 109.62264 * 351.03962 * 8 7 2 30 30 H 1.08999 * 109.48340 * 185.39258 * 9 8 7 31 31 H 1.09005 * 109.48494 * 65.35077 * 9 8 7 32 32 H 0.96996 * 120.00409 * 334.99390 * 12 10 9 33 33 H 1.07995 * 120.07561 * 0.02562 * 16 15 13 34 34 H 1.08000 * 119.92831 * 180.27939 * 17 16 15 35 35 H 1.08001 * 119.85373 * 179.76990 * 18 17 16 36 36 H 1.08000 * 119.92343 * 179.97438 * 19 18 17 37 37 H 0.96697 * 114.00389 * 179.97438 * 24 21 20 38 38 H 1.08997 * 109.48365 * 56.38728 * 25 10 9 39 39 H 1.09003 * 109.48250 * 176.42308 * 25 10 9 40 40 H 1.08994 * 109.62453 * 8.95719 * 26 7 2 41 41 H 1.08997 * 109.78174 * 248.47982 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 6 3.5170 -1.2166 0.0011 9 6 3.9910 -2.1318 -1.1327 10 6 3.3401 -3.5077 -0.9810 11 1 3.5727 -3.9118 0.0042 12 7 3.8604 -4.4089 -2.0122 13 6 3.8531 -5.7412 -1.8088 14 8 3.4145 -6.1952 -0.7700 15 6 4.3777 -6.6507 -2.8497 16 6 3.9758 -6.5017 -4.1782 17 6 4.4730 -7.3504 -5.1453 18 6 5.3599 -8.3547 -4.7992 19 6 5.7578 -8.5113 -3.4835 20 6 5.2724 -7.6655 -2.5074 21 16 5.7811 -7.8664 -0.8324 22 8 6.9461 -8.6796 -0.8616 23 8 5.7510 -6.5724 -0.2460 24 8 4.7053 -8.6819 -0.1296 25 6 1.8232 -3.3833 -1.1327 26 6 1.2675 -2.5152 0.0017 27 1 -0.4850 0.8401 0.0004 28 1 3.8770 -1.5999 0.9558 29 1 3.8982 -0.2080 -0.1589 30 1 5.0751 -2.2355 -1.0871 31 1 3.7070 -1.6992 -2.0920 32 1 4.2100 -4.0468 -2.8413 33 1 3.2806 -5.7209 -4.4490 34 1 4.1664 -7.2333 -6.1742 35 1 5.7434 -9.0188 -5.5596 36 1 6.4499 -9.2974 -3.2200 37 1 4.8879 -8.8517 0.8047 38 1 1.5905 -2.9210 -2.0920 39 1 1.3708 -4.3740 -1.0871 40 1 0.2035 -2.3409 -0.1578 41 1 1.4168 -3.0200 0.9561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189700308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:36 Heat of formation + Delta-G solvation = -167.323241 kcal Electronic energy + Delta-G solvation = -27896.320568 eV Core-core repulsion = 23866.782127 eV Total energy + Delta-G solvation = -4029.538440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.44830 -39.72714 -39.19135 -38.60647 -38.01356 -37.04551 -35.43148 -33.62244 -32.51676 -32.23698 -31.45738 -29.06890 -25.48964 -24.39017 -23.76691 -23.40812 -22.10424 -21.52867 -21.28699 -19.49446 -19.41600 -18.48452 -17.89801 -17.57420 -17.22194 -16.59202 -16.38142 -16.34378 -15.96875 -15.56916 -15.28441 -15.03894 -14.77801 -14.60473 -14.12387 -14.07220 -13.97191 -13.89925 -13.52639 -13.40089 -13.38252 -13.26294 -13.05744 -12.78746 -12.70856 -12.66023 -12.53889 -12.07807 -11.90434 -11.80819 -11.47951 -11.20460 -10.85399 -10.69311 -10.55779 -10.53119 -10.17713 -9.89502 -8.16051 -6.11671 -0.71661 -0.42522 0.01134 1.42096 1.44114 1.52008 1.62468 2.00107 2.09477 2.32967 2.42283 2.57920 3.11401 3.32947 3.55890 3.83595 3.98872 4.02091 4.22830 4.25066 4.29596 4.43672 4.51177 4.70703 4.73851 4.85667 4.90480 4.98211 5.02587 5.10466 5.14922 5.20804 5.22658 5.22857 5.25187 5.55095 5.56718 5.66167 5.70338 5.75381 5.81038 6.34104 6.51158 6.93539 7.18100 7.46595 8.95335 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019577 B = 0.003194 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.942629 B = 8764.876328 C = 9327.429608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.023 3.977 3 Si 0.948 3.052 4 H -0.256 1.256 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.502 4.502 8 C -0.012 4.012 9 C -0.106 4.106 10 C 0.166 3.834 11 H 0.056 0.944 12 N -0.698 5.698 13 C 0.540 3.460 14 O -0.556 6.556 15 C -0.047 4.047 16 C -0.114 4.114 17 C -0.052 4.052 18 C -0.115 4.115 19 C -0.028 4.028 20 C -0.650 4.650 21 S 2.735 3.265 22 O -0.992 6.992 23 O -0.990 6.990 24 O -0.881 6.881 25 C -0.100 4.100 26 C 0.009 3.991 27 H 0.264 0.736 28 H 0.017 0.983 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.412 0.588 33 H 0.154 0.846 34 H 0.179 0.821 35 H 0.179 0.821 36 H 0.166 0.834 37 H 0.474 0.526 38 H 0.054 0.946 39 H 0.030 0.970 40 H 0.027 0.973 41 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.313 -18.232 -13.406 26.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.176 4.176 3 Si 0.774 3.226 4 H -0.181 1.181 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.521 4.521 8 C -0.050 4.050 9 C -0.144 4.144 10 C 0.062 3.938 11 H 0.074 0.926 12 N -0.348 5.348 13 C 0.326 3.674 14 O -0.435 6.435 15 C -0.052 4.052 16 C -0.133 4.133 17 C -0.070 4.070 18 C -0.134 4.134 19 C -0.047 4.047 20 C -0.739 4.739 21 S 2.826 3.174 22 O -0.990 6.990 23 O -0.988 6.988 24 O -0.753 6.753 25 C -0.139 4.139 26 C -0.029 4.029 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.249 0.751 33 H 0.172 0.828 34 H 0.196 0.804 35 H 0.196 0.804 36 H 0.183 0.817 37 H 0.347 0.653 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.046 0.954 41 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges 12.954 -18.392 -12.538 25.754 hybrid contribution -0.272 1.183 0.076 1.216 sum 12.683 -17.209 -12.461 24.744 Atomic orbital electron populations 1.69985 1.07845 1.27650 1.51730 1.25655 0.95375 1.01930 0.94591 0.85725 0.78292 0.78837 0.79733 1.18100 1.22175 1.19416 1.20588 0.91209 0.91534 1.48746 1.19607 0.94598 0.95836 0.94953 1.21736 0.98618 0.93415 1.00631 1.20692 0.93200 0.89360 0.90523 0.92563 1.45912 1.62333 1.05057 1.21465 1.18750 0.78638 0.83527 0.86510 1.90786 1.47863 1.76710 1.28142 1.19621 0.95952 0.94259 0.95338 1.21760 1.00117 1.01122 0.90302 1.21980 0.92491 0.91464 1.01041 1.21997 0.96639 0.98528 0.96222 1.21360 0.95123 0.95224 0.93034 1.30383 1.12866 1.06579 1.24118 0.99946 0.70648 0.72342 0.74483 1.93583 1.49029 1.69040 1.87374 1.93666 1.85634 1.43621 1.75913 1.85480 1.69352 1.81780 1.38712 1.21770 0.94811 0.97349 0.99998 1.19289 0.97146 0.93732 0.92685 0.92731 0.96440 0.94389 0.91430 0.91262 0.75128 0.82840 0.80367 0.80372 0.81699 0.65333 0.92770 0.95097 0.95431 0.99264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.33 12.73 21.45 0.27 -55.06 16 2 C 0.02 1.26 5.46 84.65 0.46 1.72 16 3 Si 0.95 43.07 26.80 68.60 1.84 44.91 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 5 H -0.30 -13.42 7.11 99.48 0.71 -12.72 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.50 -26.85 5.51 -16.17 -0.09 -26.94 16 8 C -0.01 -0.54 5.59 30.11 0.17 -0.37 16 9 C -0.11 -4.04 5.40 30.66 0.17 -3.87 16 10 C 0.17 6.72 2.35 44.96 0.11 6.82 16 11 H 0.06 2.63 7.58 -2.39 -0.02 2.62 16 12 N -0.70 -22.70 5.03 -445.54 -2.24 -24.94 16 13 C 0.54 18.46 5.67 86.79 0.49 18.95 16 14 O -0.56 -23.14 13.82 21.50 0.30 -22.85 16 15 C -0.05 -1.21 5.68 -20.09 -0.11 -1.32 16 16 C -0.11 -1.97 9.55 22.53 0.22 -1.76 16 17 C -0.05 -0.54 10.03 22.23 0.22 -0.32 16 18 C -0.12 -1.16 10.04 22.33 0.22 -0.93 16 19 C -0.03 -0.45 9.52 22.23 0.21 -0.24 16 20 C -0.65 -15.17 5.98 22.53 0.13 -15.04 16 21 S 2.74 68.96 5.23 -56.49 -0.30 68.66 16 22 O -0.99 -25.55 17.12 -118.78 -2.03 -27.58 16 23 O -0.99 -33.92 14.63 -115.30 -1.69 -35.61 16 24 O -0.88 -18.97 12.96 -117.07 -1.52 -20.48 16 25 C -0.10 -4.51 5.50 30.67 0.17 -4.34 16 26 C 0.01 0.51 5.97 30.12 0.18 0.69 16 27 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.04 1.64 5.17 -2.39 -0.01 1.63 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 32 H 0.41 10.19 8.41 -92.71 -0.78 9.41 16 33 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.18 0.45 8.06 -2.91 -0.02 0.42 16 35 H 0.18 0.36 8.06 -2.91 -0.02 0.34 16 36 H 0.17 1.99 7.48 -2.91 -0.02 1.97 16 37 H 0.47 5.11 9.03 -87.93 -0.79 4.32 16 38 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.03 1.60 7.07 -2.39 -0.02 1.59 16 41 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 Total: -1.00 -83.57 347.99 -3.30 -86.87 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -0.48 Total: 13.03 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 2.55 Total: -26.95 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -1.97 Total: -80.00 kcal Atomic # 8 Polarization: -101.57 SS G_CDS: -4.94 Total: -106.51 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.84 Total: 44.91 kcal Atomic # 16 Polarization: 68.96 SS G_CDS: -0.30 Total: 68.66 kcal Total: -83.57 -3.30 -86.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189700308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.454 kcal (2) G-P(sol) polarization free energy of solvation -83.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds