Wall clock time and date at job start Tue Mar 31 2020 22:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00215 * 2 1 4 4 H 1.48500 * 109.47247 * 274.97971 * 3 2 1 5 5 H 1.48502 * 109.47215 * 34.97679 * 3 2 1 6 6 H 1.48503 * 109.47239 * 154.97825 * 3 2 1 7 7 C 1.37880 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00212 * 185.10073 * 7 2 1 9 9 S 1.76201 * 119.99836 * 5.10278 * 7 2 1 10 10 O 1.42100 * 106.40156 * 70.14726 * 9 7 2 11 11 O 1.42095 * 106.40357 * 297.22327 * 9 7 2 12 12 N 1.65601 * 107.21879 * 183.68460 * 9 7 2 13 13 C 1.46503 * 119.99787 * 67.60747 * 12 9 7 14 14 C 1.50696 * 112.84937 * 55.61590 * 13 12 9 15 15 O 1.20825 * 119.99892 * 217.70653 * 14 13 12 16 16 O 1.34228 * 119.99837 * 37.98858 * 14 13 12 17 17 C 1.45201 * 116.99958 * 184.95118 * 16 14 13 18 18 C 1.50700 * 109.47214 * 184.24114 * 17 16 14 19 19 C 1.38234 * 119.99638 * 274.42867 * 18 17 16 20 20 C 1.38241 * 119.99778 * 179.76674 * 19 18 17 21 21 C 1.38240 * 119.99838 * 0.50420 * 20 19 18 22 22 C 1.38238 * 119.99582 * 359.75112 * 21 20 19 23 23 C 1.38226 * 120.00279 * 359.97438 * 22 21 20 24 24 C 1.53780 * 113.61294 * 186.81772 * 13 12 9 25 25 C 1.53955 * 87.02194 * 89.22815 * 24 13 12 26 26 C 1.53783 * 113.61289 * 284.42376 * 13 12 9 27 27 H 0.97004 * 119.99851 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00052 * 247.60909 * 12 9 7 29 29 H 1.08995 * 109.46986 * 304.24282 * 17 16 14 30 30 H 1.09008 * 109.46871 * 64.24154 * 17 16 14 31 31 H 1.07997 * 120.00415 * 359.97438 * 19 18 17 32 32 H 1.08002 * 120.00096 * 180.23331 * 20 19 18 33 33 H 1.07996 * 120.00292 * 179.72323 * 21 20 19 34 34 H 1.08004 * 119.99586 * 179.97438 * 22 21 20 35 35 H 1.08007 * 120.00037 * 179.97438 * 23 22 21 36 36 H 1.09007 * 113.61149 * 203.75159 * 24 13 12 37 37 H 1.09003 * 113.61375 * 334.64489 * 24 13 12 38 38 H 1.09001 * 113.53524 * 270.80557 * 25 24 13 39 39 H 1.09002 * 113.73855 * 139.94291 * 25 24 13 40 40 H 1.09002 * 113.61795 * 25.34217 * 26 13 12 41 41 H 1.08997 * 113.61347 * 156.17142 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3915 2.1071 -1.3948 5 1 1.5032 2.6200 0.8026 6 1 3.5954 1.4120 0.5922 7 6 2.0045 -1.1941 0.0005 8 1 3.0813 -1.1960 0.0837 9 16 1.1287 -2.7170 -0.1345 10 8 0.6279 -2.7754 -1.4631 11 8 0.2969 -2.8048 1.0142 12 7 2.2414 -3.9361 -0.0003 13 6 2.9305 -4.1619 1.2727 14 6 1.9802 -4.3776 2.4223 15 8 2.2371 -3.9229 3.5118 16 8 0.8512 -5.0795 2.2371 17 6 -0.0698 -5.1541 3.3571 18 6 -1.2197 -6.0613 3.0023 19 6 -2.3129 -5.5578 2.3225 20 6 -3.3656 -6.3911 1.9929 21 6 -3.3296 -7.7255 2.3522 22 6 -2.2386 -8.2277 3.0367 23 6 -1.1835 -7.3957 3.3613 24 6 4.0470 -5.2162 1.1902 25 6 4.9982 -4.0633 0.8212 26 6 4.0314 -3.1298 1.5689 27 1 -0.4850 0.8401 0.0004 28 1 2.4370 -4.5005 -0.7645 29 1 0.4501 -5.5506 4.2292 30 1 -0.4494 -4.1574 3.5823 31 1 -2.3432 -4.5143 2.0460 32 1 -4.2181 -5.9986 1.4584 33 1 -4.1539 -8.3755 2.0986 34 1 -2.2106 -9.2701 3.3178 35 1 -0.3313 -7.7881 3.8965 36 1 4.2779 -5.6834 2.1476 37 1 3.9053 -5.9404 0.3880 38 1 5.0518 -3.8692 -0.2501 39 1 5.9806 -4.1386 1.2874 40 1 3.8773 -2.1721 1.0717 41 1 4.2571 -3.0245 2.6300 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192996810.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:01 Heat of formation + Delta-G solvation = -122.287101 kcal Electronic energy + Delta-G solvation = -28386.685753 eV Core-core repulsion = 24359.100226 eV Total energy + Delta-G solvation = -4027.585527 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.49777 -39.16543 -38.10495 -35.80040 -35.22791 -33.98186 -33.17492 -32.18579 -31.74377 -30.80743 -26.98671 -26.48191 -25.35772 -25.31187 -22.48036 -21.60664 -20.90923 -19.41909 -18.77595 -18.02689 -17.03279 -16.88130 -16.52375 -16.08932 -15.73363 -15.28553 -15.11211 -14.96713 -14.57451 -14.29938 -14.00067 -13.51537 -13.31705 -13.21510 -12.85667 -12.61628 -12.34073 -12.17557 -12.04636 -11.86892 -11.51519 -11.24110 -11.21900 -10.98422 -10.96806 -10.73249 -10.62328 -10.45696 -10.37132 -10.27446 -10.18834 -10.08317 -9.84285 -9.27584 -9.07936 -8.83087 -8.74797 -8.58000 -6.72907 -5.35288 1.29602 1.49817 2.21199 2.64182 3.05486 3.12837 3.18230 3.23840 3.97527 4.02845 4.49868 4.57245 4.62188 4.68003 4.80224 4.91825 4.96792 5.04818 5.15894 5.22955 5.40432 5.49287 5.60265 5.71457 5.74272 5.75612 5.85067 5.90266 5.97047 6.06754 6.16452 6.17639 6.21609 6.39847 6.49000 6.56322 6.59906 6.74097 6.74872 6.95883 7.07590 7.32088 7.74812 7.93466 8.29760 8.86010 10.20850 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012760 B = 0.004588 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.806079 B = 6100.755574 C = 7303.934540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.135 3.865 3 Si 0.918 3.082 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.261 1.261 7 C -1.023 5.023 8 H 0.108 0.892 9 S 2.708 3.292 10 O -1.007 7.007 11 O -0.987 6.987 12 N -1.106 6.106 13 C 0.171 3.829 14 C 0.480 3.520 15 O -0.509 6.509 16 O -0.329 6.329 17 C 0.110 3.890 18 C -0.089 4.089 19 C -0.086 4.086 20 C -0.125 4.125 21 C -0.116 4.116 22 C -0.130 4.130 23 C -0.102 4.102 24 C -0.124 4.124 25 C -0.134 4.134 26 C -0.149 4.149 27 H 0.290 0.710 28 H 0.409 0.591 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.752 -12.676 4.596 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.084 4.084 3 Si 0.741 3.259 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.185 1.185 7 C -1.156 5.156 8 H 0.126 0.874 9 S 2.808 3.192 10 O -0.997 6.997 11 O -0.977 6.977 12 N -0.859 5.859 13 C 0.078 3.922 14 C 0.321 3.679 15 O -0.396 6.396 16 O -0.245 6.245 17 C 0.037 3.963 18 C -0.089 4.089 19 C -0.104 4.104 20 C -0.143 4.143 21 C -0.134 4.134 22 C -0.148 4.148 23 C -0.120 4.120 24 C -0.163 4.163 25 C -0.171 4.171 26 C -0.188 4.188 27 H 0.101 0.899 28 H 0.241 0.759 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.153 0.847 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.127 0.873 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.619 -12.522 4.990 13.576 hybrid contribution 0.837 1.034 -0.174 1.341 sum 2.456 -11.488 4.816 12.696 Atomic orbital electron populations 1.69917 1.06754 1.30651 1.39712 1.24724 0.94448 1.00741 0.88445 0.86194 0.80363 0.80252 0.79049 1.19194 1.19956 1.18495 1.30696 1.06336 1.11736 1.66818 0.87364 1.00714 0.72265 0.73176 0.73051 1.93388 1.78654 1.87698 1.39986 1.93359 1.65506 1.86869 1.51939 1.55893 1.62058 1.52377 1.15610 1.20746 0.88559 1.00579 0.82307 1.23615 0.80473 0.74179 0.89608 1.90583 1.75226 1.47131 1.26706 1.86532 1.29470 1.66084 1.42368 1.21728 0.87344 0.99974 0.87293 1.19617 0.95058 0.94040 1.00186 1.21367 0.92683 1.01137 0.95180 1.21215 0.98912 0.93830 1.00352 1.21179 0.98228 0.95592 0.98431 1.21064 0.94295 0.99510 0.99966 1.21063 0.98449 0.92752 0.99717 1.23212 0.93660 0.96308 1.03111 1.22819 0.97486 0.95398 1.01405 1.23731 0.92508 0.99584 1.02940 0.89941 0.75915 0.91147 0.89524 0.84711 0.85785 0.86199 0.86132 0.86096 0.88774 0.89766 0.89272 0.90675 0.87340 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.29 13.07 55.43 0.72 -23.56 16 2 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 3 Si 0.92 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 7 C -1.02 -27.31 8.89 30.60 0.27 -27.04 16 8 H 0.11 2.60 5.37 -52.49 -0.28 2.32 16 9 S 2.71 70.49 5.08 -107.50 -0.55 69.95 16 10 O -1.01 -29.11 18.02 -57.17 -1.03 -30.14 16 11 O -0.99 -27.64 14.78 -65.22 -0.96 -28.61 16 12 N -1.11 -21.73 5.54 0.26 0.00 -21.73 16 13 C 0.17 3.07 1.29 -132.16 -0.17 2.90 16 14 C 0.48 9.83 5.52 36.00 0.20 10.03 16 15 O -0.51 -11.02 15.56 -18.75 -0.29 -11.32 16 16 O -0.33 -6.66 8.89 -45.72 -0.41 -7.07 16 17 C 0.11 1.97 5.68 36.01 0.20 2.17 16 18 C -0.09 -1.42 5.52 -104.63 -0.58 -2.00 16 19 C -0.09 -1.39 9.72 -39.58 -0.38 -1.77 16 20 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 21 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 22 C -0.13 -1.51 10.05 -39.59 -0.40 -1.91 16 23 C -0.10 -1.34 9.68 -39.59 -0.38 -1.73 16 24 C -0.12 -1.60 7.35 -25.83 -0.19 -1.79 16 25 C -0.13 -1.67 8.00 -25.83 -0.21 -1.88 16 26 C -0.15 -2.50 7.12 -25.92 -0.18 -2.69 16 27 H 0.29 7.56 8.31 -40.82 -0.34 7.23 16 28 H 0.41 6.71 8.75 -34.47 -0.30 6.41 16 29 H 0.07 1.10 7.90 -51.93 -0.41 0.69 16 30 H 0.09 1.69 8.11 -51.92 -0.42 1.27 16 31 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 32 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 35 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 36 H 0.09 1.09 8.09 -51.92 -0.42 0.67 16 37 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.11 2.03 4.68 -51.93 -0.24 1.78 16 41 H 0.10 1.68 7.35 -51.93 -0.38 1.30 16 LS Contribution 359.40 15.07 5.42 5.42 Total: -1.00 -35.53 359.40 -9.80 -45.34 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -4.97 Total: 12.42 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: -2.71 Total: -25.96 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.73 Total: -45.30 kcal Atomic # 8 Polarization: -74.44 SS G_CDS: -2.69 Total: -77.13 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 70.49 SS G_CDS: -0.55 Total: 69.95 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.53 -9.80 -45.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192996810.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.950 kcal (2) G-P(sol) polarization free energy of solvation -35.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds