Wall clock time and date at job start Tue Mar 31 2020 22:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00215 * 2 1 4 4 H 1.48500 * 109.47247 * 274.97971 * 3 2 1 5 5 H 1.48502 * 109.47215 * 34.97679 * 3 2 1 6 6 H 1.48503 * 109.47239 * 154.97825 * 3 2 1 7 7 C 1.37880 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00212 * 185.10073 * 7 2 1 9 9 S 1.76201 * 119.99836 * 5.10278 * 7 2 1 10 10 O 1.42100 * 106.40156 * 70.14726 * 9 7 2 11 11 O 1.42095 * 106.40357 * 297.22327 * 9 7 2 12 12 N 1.65601 * 107.21879 * 183.68460 * 9 7 2 13 13 C 1.46503 * 119.99787 * 67.60747 * 12 9 7 14 14 C 1.50696 * 112.84937 * 55.61590 * 13 12 9 15 15 O 1.20825 * 119.99892 * 217.70653 * 14 13 12 16 16 O 1.34228 * 119.99837 * 37.98858 * 14 13 12 17 17 C 1.45201 * 116.99958 * 184.95118 * 16 14 13 18 18 C 1.50700 * 109.47214 * 184.24114 * 17 16 14 19 19 C 1.38234 * 119.99638 * 274.42867 * 18 17 16 20 20 C 1.38241 * 119.99778 * 179.76674 * 19 18 17 21 21 C 1.38240 * 119.99838 * 0.50420 * 20 19 18 22 22 C 1.38238 * 119.99582 * 359.75112 * 21 20 19 23 23 C 1.38226 * 120.00279 * 359.97438 * 22 21 20 24 24 C 1.53780 * 113.61294 * 186.81772 * 13 12 9 25 25 C 1.53955 * 87.02194 * 89.22815 * 24 13 12 26 26 C 1.53783 * 113.61289 * 284.42376 * 13 12 9 27 27 H 0.97004 * 119.99851 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00052 * 247.60909 * 12 9 7 29 29 H 1.08995 * 109.46986 * 304.24282 * 17 16 14 30 30 H 1.09008 * 109.46871 * 64.24154 * 17 16 14 31 31 H 1.07997 * 120.00415 * 359.97438 * 19 18 17 32 32 H 1.08002 * 120.00096 * 180.23331 * 20 19 18 33 33 H 1.07996 * 120.00292 * 179.72323 * 21 20 19 34 34 H 1.08004 * 119.99586 * 179.97438 * 22 21 20 35 35 H 1.08007 * 120.00037 * 179.97438 * 23 22 21 36 36 H 1.09007 * 113.61149 * 203.75159 * 24 13 12 37 37 H 1.09003 * 113.61375 * 334.64489 * 24 13 12 38 38 H 1.09001 * 113.53524 * 270.80557 * 25 24 13 39 39 H 1.09002 * 113.73855 * 139.94291 * 25 24 13 40 40 H 1.09002 * 113.61795 * 25.34217 * 26 13 12 41 41 H 1.08997 * 113.61347 * 156.17142 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3915 2.1071 -1.3948 5 1 1.5032 2.6200 0.8026 6 1 3.5954 1.4120 0.5922 7 6 2.0045 -1.1941 0.0005 8 1 3.0813 -1.1960 0.0837 9 16 1.1287 -2.7170 -0.1345 10 8 0.6279 -2.7754 -1.4631 11 8 0.2969 -2.8048 1.0142 12 7 2.2414 -3.9361 -0.0003 13 6 2.9305 -4.1619 1.2727 14 6 1.9802 -4.3776 2.4223 15 8 2.2371 -3.9229 3.5118 16 8 0.8512 -5.0795 2.2371 17 6 -0.0698 -5.1541 3.3571 18 6 -1.2197 -6.0613 3.0023 19 6 -2.3129 -5.5578 2.3225 20 6 -3.3656 -6.3911 1.9929 21 6 -3.3296 -7.7255 2.3522 22 6 -2.2386 -8.2277 3.0367 23 6 -1.1835 -7.3957 3.3613 24 6 4.0470 -5.2162 1.1902 25 6 4.9982 -4.0633 0.8212 26 6 4.0314 -3.1298 1.5689 27 1 -0.4850 0.8401 0.0004 28 1 2.4370 -4.5005 -0.7645 29 1 0.4501 -5.5506 4.2292 30 1 -0.4494 -4.1574 3.5823 31 1 -2.3432 -4.5143 2.0460 32 1 -4.2181 -5.9986 1.4584 33 1 -4.1539 -8.3755 2.0986 34 1 -2.2106 -9.2701 3.3178 35 1 -0.3313 -7.7881 3.8965 36 1 4.2779 -5.6834 2.1476 37 1 3.9053 -5.9404 0.3880 38 1 5.0518 -3.8692 -0.2501 39 1 5.9806 -4.1386 1.2874 40 1 3.8773 -2.1721 1.0717 41 1 4.2571 -3.0245 2.6300 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192996810.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:00 Heat of formation + Delta-G solvation = -147.418619 kcal Electronic energy + Delta-G solvation = -28387.775538 eV Core-core repulsion = 24359.100226 eV Total energy + Delta-G solvation = -4028.675311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.96482 -40.30014 -39.42475 -37.44182 -37.32374 -36.14684 -35.23599 -33.61923 -33.03867 -31.86080 -28.51014 -28.27796 -26.68032 -26.60396 -23.54116 -22.84964 -22.16501 -21.18365 -20.42254 -19.73894 -18.67244 -18.41965 -18.20305 -17.39479 -17.27917 -17.02836 -16.68878 -16.12980 -15.87387 -15.84545 -15.71364 -15.28273 -14.62436 -14.37558 -14.06868 -13.99261 -13.97993 -13.65809 -13.50900 -13.23767 -13.11012 -13.01724 -12.72128 -12.49760 -12.41794 -12.34185 -12.25734 -12.10926 -12.05317 -11.85005 -11.70321 -11.59911 -11.28526 -11.19214 -10.89514 -10.39426 -9.89177 -9.82226 -8.77093 -7.49044 0.18537 0.24575 0.43311 1.08641 1.32364 1.32542 1.48586 1.86932 2.18493 2.56695 2.78210 2.86208 3.35606 3.38426 3.57663 3.72079 3.77699 3.82616 3.89025 4.09224 4.12861 4.19297 4.24828 4.34867 4.51209 4.58196 4.68607 4.72324 4.78202 4.82795 4.98142 5.01385 5.02997 5.09851 5.11498 5.34848 5.40712 5.48254 5.49689 5.54481 5.62544 5.92822 6.03760 6.24497 6.72648 6.77494 8.18915 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012760 B = 0.004588 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.806079 B = 6100.755574 C = 7303.934540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.072 3.928 3 Si 0.984 3.016 4 H -0.254 1.254 5 H -0.267 1.267 6 H -0.243 1.243 7 C -1.039 5.039 8 H 0.131 0.869 9 S 2.710 3.290 10 O -1.046 7.046 11 O -1.019 7.019 12 N -1.089 6.089 13 C 0.146 3.854 14 C 0.468 3.532 15 O -0.532 6.532 16 O -0.341 6.341 17 C 0.108 3.892 18 C -0.112 4.112 19 C -0.120 4.120 20 C -0.133 4.133 21 C -0.108 4.108 22 C -0.120 4.120 23 C -0.102 4.102 24 C -0.106 4.106 25 C -0.114 4.114 26 C -0.161 4.161 27 H 0.297 0.703 28 H 0.424 0.576 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.138 0.862 33 H 0.158 0.842 34 H 0.162 0.838 35 H 0.144 0.856 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.836 -14.982 4.662 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.802 3.198 4 H -0.178 1.178 5 H -0.191 1.191 6 H -0.166 1.166 7 C -1.172 5.172 8 H 0.149 0.851 9 S 2.811 3.189 10 O -1.036 7.036 11 O -1.009 7.009 12 N -0.848 5.848 13 C 0.054 3.946 14 C 0.311 3.689 15 O -0.421 6.421 16 O -0.257 6.257 17 C 0.035 3.965 18 C -0.112 4.112 19 C -0.139 4.139 20 C -0.150 4.150 21 C -0.126 4.126 22 C -0.138 4.138 23 C -0.120 4.120 24 C -0.144 4.144 25 C -0.151 4.151 26 C -0.200 4.200 27 H 0.107 0.893 28 H 0.260 0.740 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.156 0.844 33 H 0.175 0.825 34 H 0.179 0.821 35 H 0.162 0.838 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.698 -14.859 5.035 16.119 hybrid contribution 0.121 1.645 -0.140 1.656 sum 3.819 -13.214 4.895 14.600 Atomic orbital electron populations 1.70025 1.08768 1.32093 1.41312 1.25980 0.95309 1.05244 0.87568 0.85204 0.79545 0.75079 0.79936 1.17764 1.19145 1.16568 1.31078 1.07677 1.12140 1.66297 0.85130 1.00263 0.72819 0.74004 0.71767 1.93322 1.80179 1.88522 1.41608 1.93327 1.67343 1.87560 1.52670 1.55164 1.61303 1.51108 1.17205 1.21357 0.88761 1.04277 0.80231 1.24324 0.80686 0.73629 0.90253 1.90547 1.75762 1.48023 1.27815 1.86533 1.29699 1.65946 1.43482 1.21814 0.88033 0.98982 0.87691 1.19592 0.94232 0.95355 1.01984 1.21272 0.94823 1.00141 0.97618 1.21434 0.98395 0.94782 1.00429 1.21627 0.99288 0.94775 0.96864 1.21553 0.92991 1.01067 0.98185 1.21333 0.99955 0.91350 0.99349 1.23300 0.90155 0.95897 1.05081 1.22823 0.98010 0.92734 1.01580 1.23823 0.93717 0.98937 1.03496 0.89332 0.73980 0.89124 0.93033 0.88422 0.84444 0.82455 0.82085 0.83844 0.86937 0.87214 0.88414 0.87363 0.89723 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.61 13.07 21.45 0.28 -53.33 16 2 C 0.07 4.02 5.46 84.66 0.46 4.48 16 3 Si 0.98 41.44 29.54 68.60 2.03 43.47 16 4 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.24 -9.41 7.11 99.48 0.71 -8.70 16 7 C -1.04 -56.65 8.89 67.73 0.60 -56.05 16 8 H 0.13 6.29 5.37 -2.91 -0.02 6.28 16 9 S 2.71 146.97 5.08 -56.49 -0.29 146.68 16 10 O -1.05 -63.10 18.02 -128.00 -2.31 -65.40 16 11 O -1.02 -60.99 14.78 -120.31 -1.78 -62.77 16 12 N -1.09 -43.09 5.54 -153.08 -0.85 -43.94 16 13 C 0.15 5.17 1.29 3.38 0.00 5.17 16 14 C 0.47 19.70 5.52 71.23 0.39 20.09 16 15 O -0.53 -23.86 15.56 21.97 0.34 -23.52 16 16 O -0.34 -14.47 8.89 -45.22 -0.40 -14.87 16 17 C 0.11 4.15 5.68 71.24 0.40 4.55 16 18 C -0.11 -3.73 5.52 -19.87 -0.11 -3.84 16 19 C -0.12 -4.23 9.72 22.27 0.22 -4.02 16 20 C -0.13 -3.61 10.05 22.27 0.22 -3.39 16 21 C -0.11 -2.24 10.05 22.27 0.22 -2.02 16 22 C -0.12 -2.39 10.05 22.27 0.22 -2.17 16 23 C -0.10 -2.55 9.68 22.27 0.22 -2.33 16 24 C -0.11 -2.39 7.35 31.18 0.23 -2.16 16 25 C -0.11 -2.46 8.00 31.18 0.25 -2.21 16 26 C -0.16 -5.23 7.12 31.12 0.22 -5.01 16 27 H 0.30 16.13 8.31 -92.71 -0.77 15.36 16 28 H 0.42 13.71 8.75 -96.75 -0.85 12.86 16 29 H 0.09 2.97 7.90 -2.39 -0.02 2.95 16 30 H 0.05 2.27 8.11 -2.38 -0.02 2.25 16 31 H 0.10 4.02 8.06 -2.91 -0.02 4.00 16 32 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 33 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 35 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 36 H 0.11 2.19 8.09 -2.38 -0.02 2.17 16 37 H 0.11 1.96 8.10 -2.39 -0.02 1.94 16 38 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.08 3.13 4.68 -2.39 -0.01 3.12 16 41 H 0.10 3.32 7.35 -2.39 -0.02 3.30 16 Total: -1.00 -83.66 359.40 0.81 -82.84 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: 0.23 Total: 39.73 kcal Atomic # 6 Polarization: -52.46 SS G_CDS: 3.56 Total: -48.90 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -0.57 Total: -97.27 kcal Atomic # 8 Polarization: -162.41 SS G_CDS: -4.14 Total: -166.56 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 16 Polarization: 146.97 SS G_CDS: -0.29 Total: 146.68 kcal Total: -83.66 0.81 -82.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192996810.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.574 kcal (2) G-P(sol) polarization free energy of solvation -83.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds