Wall clock time and date at job start Tue Mar 31 2020 22:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00519 * 2 1 4 4 H 1.48497 * 109.47286 * 240.00466 * 3 2 1 5 5 H 1.48504 * 109.46722 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47376 * 119.99735 * 3 2 1 7 7 C 1.37880 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00020 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.53048 * 109.45820 * 179.97438 * 9 7 2 11 11 C 1.53193 * 109.31090 * 178.62956 * 10 9 7 12 12 N 1.46921 * 108.77616 * 54.63158 * 11 10 9 13 13 S 1.65604 * 120.62783 * 126.36966 * 12 11 10 14 14 O 1.42102 * 106.40249 * 341.33158 * 13 12 11 15 15 O 1.42106 * 106.40271 * 208.41146 * 13 12 11 16 16 C 1.76204 * 107.21959 * 94.87388 * 13 12 11 17 17 C 1.37966 * 120.07414 * 12.67695 * 16 13 12 18 18 C 1.38344 * 120.14816 * 179.97438 * 17 16 13 19 19 C 1.38386 * 120.30397 * 0.02562 * 18 17 16 20 20 C 1.37933 * 120.15030 * 359.71841 * 19 18 17 21 21 C 1.39607 * 120.07498 * 192.65524 * 16 13 12 22 22 C 1.47729 * 120.15142 * 0.02625 * 21 16 13 23 23 O 1.21473 * 120.00090 * 353.87248 * 22 21 16 24 24 O 1.34707 * 120.00202 * 173.87582 * 22 21 16 25 25 C 1.46922 * 118.74207 * 306.64399 * 12 11 10 26 26 C 1.52764 * 109.00710 * 53.31130 * 25 12 11 27 27 H 0.97002 * 119.99803 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46454 * 299.97050 * 9 7 2 29 29 H 1.08998 * 109.49833 * 58.67696 * 10 9 7 30 30 H 1.09003 * 109.51855 * 298.59706 * 10 9 7 31 31 H 1.08995 * 109.58454 * 294.84451 * 11 10 9 32 32 H 1.08999 * 109.70127 * 174.49310 * 11 10 9 33 33 H 1.08002 * 119.92399 * 359.97438 * 17 16 13 34 34 H 1.08001 * 119.84575 * 179.97438 * 18 17 16 35 35 H 1.07996 * 119.92914 * 180.02562 * 19 18 17 36 36 H 1.08002 * 120.07433 * 180.29783 * 20 19 18 37 37 H 0.96697 * 117.00525 * 179.97438 * 24 22 21 38 38 H 1.09002 * 109.58742 * 173.14183 * 25 12 11 39 39 H 1.08997 * 109.58786 * 293.56560 * 25 12 11 40 40 H 1.09003 * 109.56424 * 185.55398 * 26 25 12 41 41 H 1.08998 * 109.35919 * 65.50017 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2456 -3.6623 -0.0018 11 6 1.4765 -4.9867 0.0328 12 7 0.5214 -5.0082 -1.0835 13 16 0.5080 -6.2680 -2.1582 14 8 1.7625 -6.9221 -2.0254 15 8 0.0332 -5.7402 -3.3893 16 6 -0.7114 -7.4131 -1.6046 17 6 -1.6111 -7.0454 -0.6254 18 6 -2.5694 -7.9430 -0.1899 19 6 -2.6325 -9.2148 -0.7319 20 6 -1.7426 -9.5937 -1.7152 21 6 -0.7696 -8.6943 -2.1560 22 6 0.1906 -9.0951 -3.2048 23 8 0.9600 -8.2773 -3.6684 24 8 0.2129 -10.3673 -3.6470 25 6 -0.4175 -3.8878 -1.2316 26 6 0.3692 -2.5784 -1.2489 27 1 -0.4850 0.8401 0.0004 28 1 0.6251 -2.5571 0.8899 29 1 2.8887 -3.5920 0.8754 30 1 2.8554 -3.6190 -0.9043 31 1 0.9377 -5.0717 0.9764 32 1 2.1733 -5.8190 -0.0664 33 1 -1.5671 -6.0546 -0.1979 34 1 -3.2711 -7.6502 0.5772 35 1 -3.3834 -9.9105 -0.3877 36 1 -1.7960 -10.5850 -2.1407 37 1 0.8582 -10.5819 -4.3344 38 1 -0.9684 -3.9939 -2.1662 39 1 -1.1140 -3.8815 -0.3932 40 1 -0.3233 -1.7367 -1.2592 41 1 0.9961 -2.5453 -2.1399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198762543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:15 Heat of formation + Delta-G solvation = -129.584343 kcal Electronic energy + Delta-G solvation = -28210.799863 eV Core-core repulsion = 24182.897904 eV Total energy + Delta-G solvation = -4027.901959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.83818 -39.01150 -37.74751 -36.80086 -36.52826 -35.30030 -33.44814 -31.93898 -31.71624 -30.77906 -30.07527 -25.77213 -25.23691 -23.47388 -22.55174 -22.30922 -21.79549 -19.46455 -19.05773 -18.43625 -17.72795 -17.12806 -16.94879 -16.22278 -16.04746 -15.45276 -15.39631 -15.28362 -14.72525 -14.52817 -14.03433 -13.67427 -13.41421 -13.23629 -13.07665 -12.77564 -12.76565 -12.69504 -12.06697 -12.02999 -11.98037 -11.69061 -11.61901 -11.27355 -11.00927 -10.89822 -10.79946 -10.64929 -10.62528 -10.32667 -10.01796 -9.77066 -9.54466 -9.51584 -9.17653 -8.95594 -8.41587 -8.25515 -5.98824 -4.04347 0.04737 0.63508 0.67976 2.14790 2.52967 3.17181 3.28440 3.33607 3.38014 3.41480 4.00289 4.28598 4.44978 4.47489 4.52774 4.81475 4.95435 4.99257 5.11895 5.24854 5.31182 5.42070 5.56338 5.68501 5.78144 5.85963 5.88736 6.05235 6.09464 6.13102 6.30258 6.35649 6.47680 6.51274 6.75327 6.95469 7.11496 7.25948 7.44280 7.46237 7.74109 7.98862 8.10324 8.45805 8.98829 9.60418 11.06774 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.023311 B = 0.003318 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.851022 B = 8436.024037 C = 9024.594200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.050 3.950 10 C -0.121 4.121 11 C 0.117 3.883 12 N -0.995 5.995 13 S 2.698 3.302 14 O -0.943 6.943 15 O -0.946 6.946 16 C -0.615 4.615 17 C -0.041 4.041 18 C -0.099 4.099 19 C -0.090 4.090 20 C -0.078 4.078 21 C -0.040 4.040 22 C 0.511 3.489 23 O -0.483 6.483 24 O -0.504 6.504 25 C 0.113 3.887 26 C -0.122 4.122 27 H 0.260 0.740 28 H 0.028 0.972 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.151 0.849 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.421 0.579 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.105 0.895 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.363 -20.875 -0.570 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.032 3.968 10 C -0.160 4.160 11 C -0.008 4.008 12 N -0.836 5.836 13 S 2.783 3.217 14 O -0.933 6.933 15 O -0.936 6.936 16 C -0.696 4.696 17 C -0.059 4.059 18 C -0.118 4.118 19 C -0.108 4.108 20 C -0.096 4.096 21 C -0.042 4.042 22 C 0.354 3.646 23 O -0.371 6.371 24 O -0.316 6.316 25 C -0.011 4.011 26 C -0.161 4.161 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.168 0.832 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.281 0.719 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.123 0.877 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.118 -20.580 -1.125 21.805 hybrid contribution 0.240 0.447 0.013 0.508 sum -6.878 -20.133 -1.111 21.304 Atomic orbital electron populations 1.69821 1.05831 1.26508 1.50971 1.24951 0.94873 0.99011 0.95119 0.86678 0.79622 0.83209 0.78585 1.20325 1.21379 1.20379 1.21195 0.92963 0.90635 1.50245 0.92712 1.18607 0.92628 0.91558 0.94018 1.21969 0.98847 0.94034 1.01156 1.21605 0.90882 1.00502 0.87798 1.57839 1.46535 1.33852 1.45423 1.02311 0.73755 0.72363 0.73251 1.93540 1.38747 1.75067 1.85949 1.93559 1.82091 1.78235 1.39711 1.31751 1.19072 1.11205 1.07620 1.21093 0.91762 1.00459 0.92592 1.21641 0.97643 0.93508 0.98988 1.21448 0.97884 0.96527 0.94977 1.21565 0.93094 0.99332 0.95653 1.18472 0.96281 0.93540 0.95939 1.20963 0.81752 0.80608 0.81301 1.90982 1.38870 1.51571 1.55684 1.84461 1.61101 1.29089 1.56938 1.21721 0.91193 0.87646 1.00579 1.21904 1.00165 0.94317 0.99716 0.92973 0.95378 0.92026 0.92676 0.92010 0.90099 0.83170 0.84117 0.84240 0.83545 0.71919 0.90684 0.92090 0.87674 0.93946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.50 11.30 55.43 0.63 -23.87 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.71 8.56 -34.44 -0.29 -14.01 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.05 1.20 2.07 -91.73 -0.19 1.01 16 10 C -0.12 -2.46 5.30 -26.61 -0.14 -2.60 16 11 C 0.12 2.00 6.50 -3.71 -0.02 1.98 16 12 N -0.99 -17.64 2.45 -113.77 -0.28 -17.92 16 13 S 2.70 49.90 4.04 -107.50 -0.43 49.46 16 14 O -0.94 -19.34 14.05 -67.06 -0.94 -20.28 16 15 O -0.95 -20.21 16.21 -64.40 -1.04 -21.26 16 16 C -0.62 -9.02 5.86 -39.17 -0.23 -9.25 16 17 C -0.04 -0.47 9.56 -39.64 -0.38 -0.85 16 18 C -0.10 -0.86 10.04 -39.49 -0.40 -1.25 16 19 C -0.09 -0.70 10.03 -39.64 -0.40 -1.09 16 20 C -0.08 -0.73 9.62 -39.17 -0.38 -1.11 16 21 C -0.04 -0.54 5.87 -104.98 -0.62 -1.15 16 22 C 0.51 7.17 8.12 34.61 0.28 7.45 16 23 O -0.48 -8.75 12.63 -29.56 -0.37 -9.12 16 24 O -0.50 -4.58 12.70 -40.51 -0.51 -5.09 16 25 C 0.11 2.07 5.75 -3.93 -0.02 2.05 16 26 C -0.12 -2.77 5.14 -26.83 -0.14 -2.91 16 27 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.31 6.81 -51.93 -0.35 0.95 16 33 H 0.15 1.60 6.26 -52.49 -0.33 1.27 16 34 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.15 1.00 7.63 -52.49 -0.40 0.59 16 37 H 0.42 1.91 9.11 45.56 0.42 2.33 16 38 H 0.07 1.32 7.03 -51.93 -0.37 0.96 16 39 H 0.06 0.99 7.72 -51.93 -0.40 0.58 16 40 H 0.11 2.63 6.03 -51.93 -0.31 2.32 16 41 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -35.64 345.42 -10.04 -45.68 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -4.25 Total: 1.34 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -3.02 Total: -20.18 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.35 Total: -41.79 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -2.87 Total: -55.75 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 49.90 SS G_CDS: -0.43 Total: 49.46 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.64 -10.04 -45.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198762543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.903 kcal (2) G-P(sol) polarization free energy of solvation -35.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds