Wall clock time and date at job start Tue Mar 31 2020 22:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00519 * 2 1 4 4 H 1.48497 * 109.47286 * 240.00466 * 3 2 1 5 5 H 1.48504 * 109.46722 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47376 * 119.99735 * 3 2 1 7 7 C 1.37880 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00020 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.53048 * 109.45820 * 179.97438 * 9 7 2 11 11 C 1.53193 * 109.31090 * 178.62956 * 10 9 7 12 12 N 1.46921 * 108.77616 * 54.63158 * 11 10 9 13 13 S 1.65604 * 120.62783 * 126.36966 * 12 11 10 14 14 O 1.42102 * 106.40249 * 341.33158 * 13 12 11 15 15 O 1.42106 * 106.40271 * 208.41146 * 13 12 11 16 16 C 1.76204 * 107.21959 * 94.87388 * 13 12 11 17 17 C 1.37966 * 120.07414 * 12.67695 * 16 13 12 18 18 C 1.38344 * 120.14816 * 179.97438 * 17 16 13 19 19 C 1.38386 * 120.30397 * 0.02562 * 18 17 16 20 20 C 1.37933 * 120.15030 * 359.71841 * 19 18 17 21 21 C 1.39607 * 120.07498 * 192.65524 * 16 13 12 22 22 C 1.47729 * 120.15142 * 0.02625 * 21 16 13 23 23 O 1.21473 * 120.00090 * 353.87248 * 22 21 16 24 24 O 1.34707 * 120.00202 * 173.87582 * 22 21 16 25 25 C 1.46922 * 118.74207 * 306.64399 * 12 11 10 26 26 C 1.52764 * 109.00710 * 53.31130 * 25 12 11 27 27 H 0.97002 * 119.99803 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46454 * 299.97050 * 9 7 2 29 29 H 1.08998 * 109.49833 * 58.67696 * 10 9 7 30 30 H 1.09003 * 109.51855 * 298.59706 * 10 9 7 31 31 H 1.08995 * 109.58454 * 294.84451 * 11 10 9 32 32 H 1.08999 * 109.70127 * 174.49310 * 11 10 9 33 33 H 1.08002 * 119.92399 * 359.97438 * 17 16 13 34 34 H 1.08001 * 119.84575 * 179.97438 * 18 17 16 35 35 H 1.07996 * 119.92914 * 180.02562 * 19 18 17 36 36 H 1.08002 * 120.07433 * 180.29783 * 20 19 18 37 37 H 0.96697 * 117.00525 * 179.97438 * 24 22 21 38 38 H 1.09002 * 109.58742 * 173.14183 * 25 12 11 39 39 H 1.08997 * 109.58786 * 293.56560 * 25 12 11 40 40 H 1.09003 * 109.56424 * 185.55398 * 26 25 12 41 41 H 1.08998 * 109.35919 * 65.50017 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2456 -3.6623 -0.0018 11 6 1.4765 -4.9867 0.0328 12 7 0.5214 -5.0082 -1.0835 13 16 0.5080 -6.2680 -2.1582 14 8 1.7625 -6.9221 -2.0254 15 8 0.0332 -5.7402 -3.3893 16 6 -0.7114 -7.4131 -1.6046 17 6 -1.6111 -7.0454 -0.6254 18 6 -2.5694 -7.9430 -0.1899 19 6 -2.6325 -9.2148 -0.7319 20 6 -1.7426 -9.5937 -1.7152 21 6 -0.7696 -8.6943 -2.1560 22 6 0.1906 -9.0951 -3.2048 23 8 0.9600 -8.2773 -3.6684 24 8 0.2129 -10.3673 -3.6470 25 6 -0.4175 -3.8878 -1.2316 26 6 0.3692 -2.5784 -1.2489 27 1 -0.4850 0.8401 0.0004 28 1 0.6251 -2.5571 0.8899 29 1 2.8887 -3.5920 0.8754 30 1 2.8554 -3.6190 -0.9043 31 1 0.9377 -5.0717 0.9764 32 1 2.1733 -5.8190 -0.0664 33 1 -1.5671 -6.0546 -0.1979 34 1 -3.2711 -7.6502 0.5772 35 1 -3.3834 -9.9105 -0.3877 36 1 -1.7960 -10.5850 -2.1407 37 1 0.8582 -10.5819 -4.3344 38 1 -0.9684 -3.9939 -2.1662 39 1 -1.1140 -3.8815 -0.3932 40 1 -0.3233 -1.7367 -1.2592 41 1 0.9961 -2.5453 -2.1399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198762543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:14 Heat of formation + Delta-G solvation = -154.714723 kcal Electronic energy + Delta-G solvation = -28211.889598 eV Core-core repulsion = 24182.897904 eV Total energy + Delta-G solvation = -4028.991694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.78762 -39.84188 -39.33163 -38.26032 -37.52164 -36.75214 -35.30862 -32.89309 -32.67712 -32.27832 -31.71427 -27.64183 -26.13905 -24.29071 -24.20885 -23.96347 -22.71873 -21.12406 -20.17514 -19.39566 -19.06939 -18.54278 -18.10338 -17.94783 -17.15595 -16.83120 -16.52191 -16.20651 -16.08738 -15.62458 -15.48404 -14.97479 -14.86701 -14.59116 -14.44535 -14.24578 -14.06828 -13.68675 -13.60330 -13.42695 -13.17917 -12.96030 -12.84906 -12.81332 -12.69073 -12.53019 -12.42028 -12.14032 -12.01808 -11.86427 -11.72591 -11.39399 -10.96163 -10.79610 -10.55985 -10.36215 -10.30006 -9.89993 -8.04867 -6.16940 -0.83776 -0.71037 -0.08186 1.23527 1.43196 1.44847 1.51541 1.66983 1.98125 2.41041 2.46332 2.73206 3.21694 3.40718 3.54147 3.76973 3.84389 3.92829 4.12704 4.26039 4.31140 4.37025 4.37554 4.47257 4.65761 4.68590 4.80129 4.80862 4.84864 4.92696 5.05469 5.09682 5.18985 5.28311 5.29966 5.35036 5.56604 5.64613 5.64916 5.73199 6.05640 6.17055 6.44765 6.63564 6.92463 7.49982 8.98536 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.023311 B = 0.003318 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.851022 B = 8436.024037 C = 9024.594200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.018 3.982 3 Si 0.947 3.053 4 H -0.280 1.280 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.046 0.954 9 C 0.049 3.951 10 C -0.119 4.119 11 C 0.120 3.880 12 N -0.997 5.997 13 S 2.702 3.298 14 O -0.977 6.977 15 O -0.992 6.992 16 C -0.634 4.634 17 C -0.050 4.050 18 C -0.090 4.090 19 C -0.072 4.072 20 C -0.067 4.067 21 C -0.073 4.073 22 C 0.509 3.491 23 O -0.539 6.539 24 O -0.483 6.483 25 C 0.122 3.878 26 C -0.118 4.118 27 H 0.261 0.739 28 H 0.018 0.982 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.156 0.844 34 H 0.181 0.819 35 H 0.189 0.811 36 H 0.176 0.824 37 H 0.440 0.560 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.820 -23.471 1.352 25.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.181 4.181 3 Si 0.773 3.227 4 H -0.206 1.206 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.064 0.936 9 C 0.030 3.970 10 C -0.158 4.158 11 C -0.004 4.004 12 N -0.838 5.838 13 S 2.795 3.205 14 O -0.967 6.967 15 O -0.983 6.983 16 C -0.722 4.722 17 C -0.068 4.068 18 C -0.108 4.108 19 C -0.089 4.089 20 C -0.085 4.085 21 C -0.076 4.076 22 C 0.354 3.646 23 O -0.431 6.431 24 O -0.296 6.296 25 C -0.002 4.002 26 C -0.158 4.158 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.173 0.827 34 H 0.198 0.802 35 H 0.206 0.794 36 H 0.193 0.807 37 H 0.303 0.697 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -9.521 -23.164 0.774 25.057 hybrid contribution 0.900 1.093 -0.559 1.522 sum -8.622 -22.071 0.215 23.696 Atomic orbital electron populations 1.69926 1.06691 1.27109 1.51237 1.25615 0.95735 1.01828 0.94943 0.85794 0.78570 0.79836 0.78491 1.20600 1.20760 1.19652 1.21582 0.92955 0.92505 1.50525 0.93553 1.18574 0.93028 0.91710 0.93652 1.21887 0.98422 0.94825 1.00663 1.21647 0.91131 0.98650 0.88999 1.57679 1.46795 1.34010 1.45268 1.01512 0.73897 0.72523 0.72555 1.93479 1.41489 1.75429 1.86268 1.93485 1.82768 1.79500 1.42501 1.30913 1.19698 1.10975 1.10624 1.21350 0.91978 1.01608 0.91911 1.22142 0.96614 0.93124 0.98906 1.22075 0.97276 0.96742 0.92805 1.21988 0.91567 0.99613 0.95361 1.18696 0.97995 0.94058 0.96851 1.21360 0.81095 0.81171 0.81002 1.90960 1.41233 1.53175 1.57725 1.84414 1.61459 1.26500 1.57271 1.21568 0.90949 0.85533 1.02179 1.21734 0.99600 0.96252 0.98193 0.92946 0.96360 0.90944 0.94741 0.88709 0.89152 0.82655 0.80213 0.79383 0.80656 0.69728 0.90283 0.89059 0.90021 0.96653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.82 11.30 21.45 0.24 -50.57 16 2 C 0.02 0.97 5.30 84.66 0.45 1.42 16 3 Si 0.95 43.78 29.54 68.60 2.03 45.80 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.54 -29.62 8.56 25.60 0.22 -29.41 16 8 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 9 C 0.05 2.38 2.07 -11.51 -0.02 2.36 16 10 C -0.12 -4.94 5.30 30.68 0.16 -4.78 16 11 C 0.12 4.08 6.50 86.36 0.56 4.64 16 12 N -1.00 -35.80 2.45 -513.87 -1.26 -37.06 16 13 S 2.70 103.57 4.04 -56.49 -0.23 103.34 16 14 O -0.98 -42.00 14.05 -118.55 -1.67 -43.67 16 15 O -0.99 -44.97 16.21 -121.09 -1.96 -46.93 16 16 C -0.63 -18.05 5.86 22.54 0.13 -17.92 16 17 C -0.05 -1.02 9.56 22.23 0.21 -0.81 16 18 C -0.09 -1.07 10.04 22.33 0.22 -0.84 16 19 C -0.07 -0.66 10.03 22.23 0.22 -0.44 16 20 C -0.07 -0.98 9.62 22.54 0.22 -0.76 16 21 C -0.07 -1.85 5.87 -20.10 -0.12 -1.97 16 22 C 0.51 14.25 8.12 70.33 0.57 14.82 16 23 O -0.54 -20.51 12.63 29.79 0.38 -20.14 16 24 O -0.48 -8.05 12.70 -56.17 -0.71 -8.77 16 25 C 0.12 4.54 5.75 86.22 0.50 5.04 16 26 C -0.12 -5.62 5.14 30.53 0.16 -5.46 16 27 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.09 2.92 6.81 -2.39 -0.02 2.90 16 33 H 0.16 2.90 6.26 -2.91 -0.02 2.88 16 34 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 35 H 0.19 0.02 8.06 -2.91 -0.02 -0.01 16 36 H 0.18 1.48 7.63 -2.91 -0.02 1.45 16 37 H 0.44 3.51 9.11 -74.06 -0.67 2.84 16 38 H 0.08 2.87 7.03 -2.39 -0.02 2.85 16 39 H 0.09 2.84 7.72 -2.39 -0.02 2.83 16 40 H 0.08 4.26 6.03 -2.39 -0.01 4.24 16 41 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -83.56 345.42 0.70 -82.86 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.40 Total: 9.25 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 3.48 Total: -34.12 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -1.02 Total: -87.63 kcal Atomic # 8 Polarization: -115.54 SS G_CDS: -3.97 Total: -119.50 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 103.57 SS G_CDS: -0.23 Total: 103.34 kcal Total: -83.56 0.70 -82.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198762543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.856 kcal (2) G-P(sol) polarization free energy of solvation -83.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds