Wall clock time and date at job start Tue Mar 31 2020 22:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99626 * 2 1 4 4 H 1.48497 * 109.46693 * 269.99615 * 3 2 1 5 5 H 1.48497 * 109.47079 * 29.99638 * 3 2 1 6 6 H 1.48501 * 109.47178 * 149.99800 * 3 2 1 7 7 C 1.37873 * 120.00362 * 179.97438 * 2 1 3 8 8 C 1.51269 * 120.85232 * 180.02562 * 7 2 1 9 9 C 1.53235 * 108.48638 * 128.59114 * 8 7 2 10 10 C 1.52960 * 109.39682 * 54.73302 * 9 8 7 11 11 H 1.09001 * 109.41230 * 56.37502 * 10 9 8 12 12 N 1.46500 * 109.41343 * 176.22710 * 10 9 8 13 13 S 1.65607 * 120.00164 * 264.65439 * 12 10 9 14 14 O 1.42099 * 106.40372 * 176.86719 * 13 12 10 15 15 O 1.42100 * 106.39767 * 309.78776 * 13 12 10 16 16 C 1.76202 * 107.21929 * 63.32763 * 13 12 10 17 17 C 1.37969 * 120.07453 * 242.91462 * 16 13 12 18 18 C 1.38343 * 120.14867 * 180.02562 * 17 16 13 19 19 C 1.38396 * 120.30260 * 0.02562 * 18 17 16 20 20 C 1.37926 * 120.14893 * 359.97438 * 19 18 17 21 21 C 1.39605 * 120.07440 * 62.63992 * 16 13 12 22 22 C 1.47722 * 120.15018 * 359.97438 * 21 16 13 23 23 O 1.21466 * 120.00153 * 353.21034 * 22 21 16 24 24 O 1.34718 * 119.99682 * 173.20609 * 22 21 16 25 25 C 1.52957 * 109.76283 * 296.29844 * 10 9 8 26 26 C 1.51270 * 120.84874 * 0.02562 * 7 2 1 27 27 H 0.96992 * 120.00557 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.62815 * 248.35172 * 8 7 2 29 29 H 1.09008 * 109.62287 * 8.72647 * 8 7 2 30 30 H 1.09008 * 109.54288 * 294.72713 * 9 8 7 31 31 H 1.08998 * 109.43109 * 174.68055 * 9 8 7 32 32 H 0.96995 * 120.00297 * 84.65012 * 12 10 9 33 33 H 1.08000 * 119.92723 * 0.02562 * 17 16 13 34 34 H 1.07999 * 119.84859 * 179.97438 * 18 17 16 35 35 H 1.07997 * 119.92188 * 179.97438 * 19 18 17 36 36 H 1.08000 * 120.06996 * 179.97438 * 20 19 18 37 37 H 0.96706 * 116.99558 * 180.02562 * 24 22 21 38 38 H 1.09000 * 109.48137 * 183.61125 * 25 10 9 39 39 H 1.09002 * 109.48116 * 303.65110 * 25 10 9 40 40 H 1.09007 * 109.62446 * 111.65702 * 26 7 2 41 41 H 1.09001 * 109.78349 * 351.17770 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 6 3.5171 -1.2164 0.0011 9 6 3.9891 -2.1297 1.1374 10 6 3.3397 -3.5063 0.9857 11 1 3.5742 -3.9110 0.0012 12 7 3.8593 -4.4063 2.0183 13 16 5.1287 -5.4133 1.6767 14 8 5.4391 -6.0922 2.8858 15 8 4.7933 -6.0868 0.4712 16 6 6.5181 -4.3945 1.3074 17 6 7.0921 -4.4359 0.0535 18 6 8.1833 -3.6370 -0.2379 19 6 8.7069 -2.7918 0.7248 20 6 8.1428 -2.7405 1.9824 21 6 7.0370 -3.5392 2.2812 22 6 6.4234 -3.4846 3.6239 23 8 5.3938 -4.0896 3.8462 24 8 7.0059 -2.7640 4.6018 25 6 1.8226 -3.3819 1.1362 26 6 1.2678 -2.5151 0.0005 27 1 -0.4850 0.8399 -0.0004 28 1 3.8780 -1.6007 -0.9528 29 1 3.8981 -0.2070 0.1568 30 1 3.7032 -1.6966 2.0960 31 1 5.0733 -2.2324 1.0936 32 1 3.4598 -4.4123 2.9022 33 1 6.6887 -5.0936 -0.7023 34 1 8.6291 -3.6737 -1.2209 35 1 9.5591 -2.1711 0.4908 36 1 8.5527 -2.0808 2.7328 37 1 6.5676 -2.7588 5.4638 38 1 1.3704 -4.3727 1.0914 39 1 1.5892 -2.9185 2.0948 40 1 1.4208 -3.0196 -0.9536 41 1 0.2029 -2.3436 0.1574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198797063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:57 Heat of formation + Delta-G solvation = -158.297662 kcal Electronic energy + Delta-G solvation = -28990.046132 eV Core-core repulsion = 24960.899070 eV Total energy + Delta-G solvation = -4029.147062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.64682 -39.75584 -39.13352 -38.24232 -37.12506 -36.88520 -35.34414 -33.00714 -32.66899 -32.39654 -31.41715 -28.59040 -26.01950 -24.29231 -23.85553 -23.27281 -22.63769 -21.27631 -20.41892 -19.41461 -19.14462 -18.58185 -18.05368 -17.61367 -17.13722 -16.77297 -16.39234 -16.32714 -16.01917 -15.63205 -15.42388 -15.02375 -14.67122 -14.38189 -14.26698 -14.11672 -14.03488 -13.83211 -13.43073 -13.19578 -13.14708 -13.08599 -12.79773 -12.73365 -12.71182 -12.51742 -12.30479 -11.99660 -11.90473 -11.79899 -11.70184 -11.38300 -10.86387 -10.78278 -10.54589 -10.47838 -10.20904 -10.02917 -8.13467 -6.08126 -0.80375 -0.48466 -0.02499 1.39775 1.41012 1.42461 1.51065 1.86157 2.00512 2.43015 2.46464 2.76605 3.13734 3.34752 3.72931 3.90877 3.93057 3.97187 4.18844 4.21471 4.33894 4.43656 4.45426 4.59613 4.76439 4.77405 4.89629 4.91482 5.01805 5.07599 5.09836 5.23664 5.25077 5.26796 5.41730 5.50383 5.60376 5.68135 5.68690 5.78812 5.85549 6.26594 6.38296 6.82111 6.97954 7.49426 8.97483 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012765 B = 0.004905 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.032343 B = 5706.739900 C = 6313.449623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.020 3.980 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.296 1.296 6 H -0.245 1.245 7 C -0.497 4.497 8 C -0.021 4.021 9 C -0.112 4.112 10 C 0.166 3.834 11 H 0.077 0.923 12 N -1.091 6.091 13 S 2.710 3.290 14 O -0.979 6.979 15 O -0.996 6.996 16 C -0.638 4.638 17 C -0.045 4.045 18 C -0.097 4.097 19 C -0.070 4.070 20 C -0.078 4.078 21 C -0.055 4.055 22 C 0.509 3.491 23 O -0.512 6.512 24 O -0.493 6.493 25 C -0.102 4.102 26 C 0.006 3.994 27 H 0.262 0.738 28 H 0.027 0.973 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.423 0.577 33 H 0.153 0.847 34 H 0.176 0.824 35 H 0.182 0.818 36 H 0.169 0.831 37 H 0.437 0.563 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.003 0.997 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.315 -3.540 4.254 22.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.178 4.178 3 Si 0.767 3.233 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.170 1.170 7 C -0.516 4.516 8 C -0.059 4.059 9 C -0.151 4.151 10 C 0.059 3.941 11 H 0.095 0.905 12 N -0.852 5.852 13 S 2.801 3.199 14 O -0.969 6.969 15 O -0.986 6.986 16 C -0.726 4.726 17 C -0.065 4.065 18 C -0.115 4.115 19 C -0.087 4.087 20 C -0.096 4.096 21 C -0.057 4.057 22 C 0.353 3.647 23 O -0.402 6.402 24 O -0.307 6.307 25 C -0.142 4.142 26 C -0.032 4.032 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.260 0.740 33 H 0.171 0.829 34 H 0.193 0.807 35 H 0.200 0.800 36 H 0.186 0.814 37 H 0.300 0.700 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.021 0.979 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 21.142 -4.522 3.805 21.953 hybrid contribution -0.649 1.388 0.939 1.797 sum 20.493 -3.135 4.744 21.267 Atomic orbital electron populations 1.69983 1.07773 1.27395 1.52117 1.25648 0.95353 1.01903 0.94924 0.85814 0.79434 0.79414 0.78667 1.19957 1.22274 1.16954 1.20637 0.91319 0.91635 1.48029 1.19826 0.94594 0.96509 0.95019 1.21945 0.98010 0.95258 0.99897 1.20629 0.94952 0.89275 0.89241 0.90495 1.55377 1.49211 1.57963 1.22692 1.01070 0.73477 0.73218 0.72171 1.93538 1.84396 1.72852 1.46140 1.93531 1.83695 1.72064 1.49280 1.30865 1.22177 1.17062 1.02530 1.21290 0.94869 0.97190 0.93111 1.22054 0.94130 0.93513 1.01811 1.22021 0.99216 0.96057 0.91431 1.21950 0.92400 0.96293 0.98995 1.18669 0.98519 0.99171 0.89357 1.21082 0.82048 0.75522 0.86049 1.90856 1.24611 1.42200 1.82580 1.84430 1.55862 1.65501 1.24869 1.21727 0.93670 0.98578 1.00192 1.19354 0.97182 0.93653 0.93000 0.92925 0.95485 0.94156 0.93238 0.92534 0.73997 0.82893 0.80657 0.80050 0.81367 0.70017 0.93076 0.93232 0.97852 0.95321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.39 12.73 21.45 0.27 -54.12 16 2 C 0.02 1.06 5.46 84.65 0.46 1.52 16 3 Si 0.94 41.78 27.53 68.60 1.89 43.67 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.30 -13.31 7.11 99.48 0.71 -12.61 16 6 H -0.25 -9.99 6.11 99.48 0.61 -9.38 16 7 C -0.50 -25.57 5.51 -16.17 -0.09 -25.65 16 8 C -0.02 -0.92 5.60 30.11 0.17 -0.75 16 9 C -0.11 -4.22 5.54 30.66 0.17 -4.05 16 10 C 0.17 6.31 2.66 44.96 0.12 6.43 16 11 H 0.08 2.97 7.55 -2.39 -0.02 2.95 16 12 N -1.09 -37.59 4.17 -169.50 -0.71 -38.30 16 13 S 2.71 92.09 4.87 -56.49 -0.28 91.81 16 14 O -0.98 -37.33 15.29 -118.41 -1.81 -39.14 16 15 O -1.00 -37.55 16.38 -128.00 -2.10 -39.64 16 16 C -0.64 -17.50 4.88 22.54 0.11 -17.39 16 17 C -0.05 -1.00 9.54 22.23 0.21 -0.79 16 18 C -0.10 -1.37 10.04 22.33 0.22 -1.15 16 19 C -0.07 -0.83 10.03 22.23 0.22 -0.61 16 20 C -0.08 -1.28 9.62 22.54 0.22 -1.07 16 21 C -0.05 -1.34 5.04 -20.10 -0.10 -1.44 16 22 C 0.51 13.02 8.08 70.33 0.57 13.59 16 23 O -0.51 -15.97 10.64 27.77 0.30 -15.67 16 24 O -0.49 -8.42 12.70 -56.27 -0.71 -9.14 16 25 C -0.10 -4.35 5.47 30.67 0.17 -4.18 16 26 C 0.01 0.32 5.97 30.12 0.18 0.50 16 27 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.03 1.11 8.14 -2.39 -0.02 1.10 16 29 H 0.04 1.69 4.59 -2.38 -0.01 1.68 16 30 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.06 1.84 6.15 -2.39 -0.01 1.83 16 32 H 0.42 14.08 7.63 -96.75 -0.74 13.34 16 33 H 0.15 3.24 7.34 -2.91 -0.02 3.22 16 34 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.18 0.65 8.06 -2.91 -0.02 0.62 16 36 H 0.17 1.93 7.63 -2.91 -0.02 1.90 16 37 H 0.44 3.84 9.11 -74.05 -0.67 3.16 16 38 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 41 H 0.03 1.59 7.08 -2.39 -0.02 1.58 16 Total: -1.00 -75.27 340.29 -0.93 -76.20 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -0.41 Total: 19.36 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 2.63 Total: -35.04 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -0.43 Total: -92.41 kcal Atomic # 8 Polarization: -99.26 SS G_CDS: -4.33 Total: -103.59 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.89 Total: 43.67 kcal Atomic # 16 Polarization: 92.09 SS G_CDS: -0.28 Total: 91.81 kcal Total: -75.27 -0.93 -76.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198797063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.097 kcal (2) G-P(sol) polarization free energy of solvation -75.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds