Wall clock time and date at job start Tue Mar 31 2020 22:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00000 * 2 1 4 4 H 1.48507 * 109.47192 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47616 * 299.94075 * 3 2 1 6 6 H 1.48500 * 109.46997 * 59.94437 * 3 2 1 7 7 C 1.37881 * 119.99703 * 179.97438 * 2 1 3 8 8 C 1.51268 * 120.85266 * 10.51317 * 7 2 1 9 9 C 1.53226 * 108.53511 * 231.32245 * 8 7 2 10 10 C 1.52954 * 109.40638 * 305.37172 * 9 8 7 11 11 H 1.09003 * 109.41146 * 303.49382 * 10 9 8 12 12 N 1.46502 * 109.41340 * 183.70541 * 10 9 8 13 13 S 1.65600 * 119.99955 * 101.39073 * 12 10 9 14 14 O 1.42102 * 106.40359 * 178.44796 * 13 12 10 15 15 O 1.42100 * 106.40489 * 311.36985 * 13 12 10 16 16 C 1.76202 * 107.21891 * 64.90992 * 13 12 10 17 17 C 1.37965 * 120.07877 * 243.06817 * 16 13 12 18 18 C 1.38350 * 120.14795 * 179.97438 * 17 16 13 19 19 C 1.38386 * 120.30502 * 0.04037 * 18 17 16 20 20 C 1.37922 * 120.15240 * 359.97438 * 19 18 17 21 21 C 1.39614 * 120.07177 * 62.79091 * 16 13 12 22 22 C 1.47725 * 120.15190 * 359.97438 * 21 16 13 23 23 O 1.21462 * 120.00034 * 353.22533 * 22 21 16 24 24 O 1.34714 * 119.99984 * 173.22223 * 22 21 16 25 25 C 1.52958 * 109.81739 * 63.59772 * 10 9 8 26 26 C 1.51273 * 120.84837 * 190.48470 * 7 2 1 27 27 H 0.96998 * 120.00367 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.62660 * 111.60584 * 8 7 2 29 29 H 1.08999 * 109.78282 * 351.13312 * 8 7 2 30 30 H 1.08997 * 109.47904 * 185.39058 * 9 8 7 31 31 H 1.09002 * 109.48224 * 65.35330 * 9 8 7 32 32 H 0.97003 * 120.00011 * 281.38716 * 12 10 9 33 33 H 1.07996 * 119.92742 * 359.97438 * 17 16 13 34 34 H 1.08001 * 119.84183 * 180.02562 * 18 17 16 35 35 H 1.08005 * 119.92341 * 179.97438 * 19 18 17 36 36 H 1.08002 * 120.07719 * 179.97438 * 20 19 18 37 37 H 0.96688 * 117.00330 * 180.02562 * 24 22 21 38 38 H 1.09007 * 109.47943 * 176.42201 * 25 10 9 39 39 H 1.08995 * 109.47978 * 56.38081 * 25 10 9 40 40 H 1.08998 * 109.62687 * 8.96473 * 26 7 2 41 41 H 1.09002 * 109.62454 * 248.39432 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8915 2.3959 -1.2132 6 1 1.8893 2.3970 1.2118 7 6 2.0044 -1.1941 0.0005 8 6 1.2865 -2.5044 -0.2358 9 6 1.6622 -3.4754 0.8884 10 6 3.1849 -3.5964 0.9676 11 1 3.5741 -3.9121 -0.0004 12 7 3.5422 -4.5909 1.9824 13 16 3.9895 -6.1179 1.5237 14 8 4.3044 -6.8197 2.7186 15 8 3.0081 -6.5623 0.5971 16 6 5.4957 -5.9714 0.6212 17 6 5.5444 -6.3402 -0.7073 18 6 6.7262 -6.2252 -1.4175 19 6 7.8668 -5.7409 -0.8014 20 6 7.8323 -5.3689 0.5263 21 6 6.6411 -5.4763 1.2474 22 6 6.5948 -5.0731 2.6678 23 8 5.5343 -5.0549 3.2597 24 8 7.7288 -4.7257 3.3067 25 6 3.7937 -2.2446 1.3440 26 6 3.4982 -1.2273 0.2369 27 1 -0.4850 0.8400 -0.0004 28 1 1.5909 -2.9207 -1.1961 29 1 0.2089 -2.3404 -0.2331 30 1 1.2299 -4.4546 0.6825 31 1 1.2775 -3.1000 1.8367 32 1 3.5168 -4.3548 2.9229 33 1 4.6581 -6.7195 -1.1941 34 1 6.7587 -6.5150 -2.4574 35 1 8.7862 -5.6541 -1.3615 36 1 8.7233 -4.9915 1.0060 37 1 7.6485 -4.4697 4.2356 38 1 4.8722 -2.3516 1.4611 39 1 3.3586 -1.8984 2.2814 40 1 3.8421 -0.2402 0.5456 41 1 4.0074 -1.5253 -0.6797 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198797074.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:00 Heat of formation + Delta-G solvation = -157.514721 kcal Electronic energy + Delta-G solvation = -28684.380367 eV Core-core repulsion = 24655.267255 eV Total energy + Delta-G solvation = -4029.113111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.63866 -39.75060 -39.13831 -38.22342 -37.12179 -36.87343 -35.33740 -33.00896 -32.65830 -32.40752 -31.40195 -28.60775 -26.02874 -24.26300 -23.87092 -23.25631 -22.65432 -21.28554 -20.42282 -19.39701 -19.12812 -18.59126 -18.06131 -17.58897 -17.15475 -16.82900 -16.31665 -16.29721 -16.03328 -15.62665 -15.43230 -14.94796 -14.73820 -14.38179 -14.18910 -14.07604 -14.00438 -13.90997 -13.43434 -13.16758 -13.13386 -12.95832 -12.88232 -12.75330 -12.73880 -12.53577 -12.37768 -11.97218 -11.86378 -11.76989 -11.68035 -11.27026 -10.94192 -10.73571 -10.54923 -10.44763 -10.23714 -10.01850 -8.13270 -6.05609 -0.81944 -0.49230 -0.04341 1.38672 1.41393 1.45489 1.54480 1.85533 2.02086 2.44927 2.45795 2.76781 3.13652 3.34346 3.72746 3.89177 3.91517 3.96175 4.19570 4.25459 4.32693 4.43271 4.44944 4.57238 4.76241 4.77502 4.88506 4.98266 5.05457 5.07607 5.09717 5.22321 5.28011 5.30485 5.42900 5.51682 5.61973 5.67434 5.70491 5.78384 5.87796 6.27354 6.39971 6.83027 6.99625 7.50595 8.97993 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.004268 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.213451 B = 6558.117649 C = 6903.959591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.020 3.980 3 Si 0.937 3.063 4 H -0.233 1.233 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.500 4.500 8 C 0.006 3.994 9 C -0.115 4.115 10 C 0.174 3.826 11 H 0.075 0.925 12 N -1.091 6.091 13 S 2.707 3.293 14 O -0.979 6.979 15 O -0.995 6.995 16 C -0.641 4.641 17 C -0.048 4.048 18 C -0.098 4.098 19 C -0.069 4.069 20 C -0.075 4.075 21 C -0.057 4.057 22 C 0.510 3.490 23 O -0.513 6.513 24 O -0.491 6.491 25 C -0.100 4.100 26 C -0.022 4.022 27 H 0.261 0.739 28 H 0.005 0.995 29 H 0.024 0.976 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.423 0.577 33 H 0.151 0.849 34 H 0.176 0.824 35 H 0.184 0.816 36 H 0.172 0.828 37 H 0.438 0.562 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.045 0.955 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.107 -10.350 0.165 24.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.178 4.178 3 Si 0.763 3.237 4 H -0.156 1.156 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.519 4.519 8 C -0.032 4.032 9 C -0.155 4.155 10 C 0.067 3.933 11 H 0.093 0.907 12 N -0.852 5.852 13 S 2.798 3.202 14 O -0.970 6.970 15 O -0.985 6.985 16 C -0.729 4.729 17 C -0.068 4.068 18 C -0.116 4.116 19 C -0.086 4.086 20 C -0.094 4.094 21 C -0.059 4.059 22 C 0.354 3.646 23 O -0.403 6.403 24 O -0.305 6.305 25 C -0.140 4.140 26 C -0.060 4.060 27 H 0.070 0.930 28 H 0.023 0.977 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.260 0.740 33 H 0.168 0.832 34 H 0.193 0.807 35 H 0.202 0.798 36 H 0.190 0.810 37 H 0.301 0.699 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 21.280 -11.181 -0.046 24.039 hybrid contribution -0.229 1.473 0.876 1.729 sum 21.052 -9.707 0.830 23.197 Atomic orbital electron populations 1.70035 1.07986 1.27372 1.51702 1.25680 0.95271 1.02079 0.94814 0.85857 0.81128 0.79545 0.77161 1.15635 1.21442 1.21420 1.20626 0.92793 0.91835 1.46628 1.19349 0.97352 0.93485 0.92989 1.21943 0.95438 0.98033 1.00051 1.20538 0.94772 0.88771 0.89218 0.90651 1.55415 1.83183 1.30054 1.16596 1.01175 0.73762 0.72623 0.72639 1.93535 1.85140 1.71976 1.46339 1.93545 1.58520 1.80429 1.66037 1.30884 1.19129 1.13899 1.08972 1.21305 1.01007 0.93778 0.90689 1.22068 0.91452 0.95966 1.02125 1.22045 1.00147 0.92601 0.93837 1.21980 0.96557 0.95748 0.95103 1.18713 0.95254 1.01599 0.90318 1.21037 0.82035 0.73778 0.87736 1.90863 1.31669 1.49588 1.68197 1.84422 1.34170 1.78580 1.33320 1.21729 0.98531 0.94043 0.99689 1.19903 0.94707 0.96344 0.95033 0.92956 0.97703 0.95749 0.94020 0.93783 0.73951 0.83150 0.80686 0.79834 0.81010 0.69919 0.91946 0.92944 0.93676 0.95558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.06 12.76 21.45 0.27 -54.78 16 2 C 0.02 1.07 5.44 84.66 0.46 1.53 16 3 Si 0.94 41.76 27.86 68.60 1.91 43.67 16 4 H -0.23 -9.32 5.73 99.48 0.57 -8.75 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 7 C -0.50 -25.97 5.48 -16.17 -0.09 -26.06 16 8 C 0.01 0.34 5.98 30.10 0.18 0.52 16 9 C -0.11 -5.21 5.54 30.65 0.17 -5.04 16 10 C 0.17 6.67 2.58 44.96 0.12 6.78 16 11 H 0.08 2.79 7.87 -2.39 -0.02 2.78 16 12 N -1.09 -37.90 4.19 -169.50 -0.71 -38.61 16 13 S 2.71 93.53 4.78 -56.49 -0.27 93.26 16 14 O -0.98 -37.79 15.28 -118.41 -1.81 -39.60 16 15 O -1.00 -38.99 16.74 -128.00 -2.14 -41.13 16 16 C -0.64 -17.44 5.84 22.54 0.13 -17.31 16 17 C -0.05 -1.08 9.54 22.23 0.21 -0.86 16 18 C -0.10 -1.34 10.04 22.33 0.22 -1.12 16 19 C -0.07 -0.74 10.03 22.23 0.22 -0.51 16 20 C -0.08 -1.13 9.62 22.54 0.22 -0.91 16 21 C -0.06 -1.32 5.87 -20.10 -0.12 -1.43 16 22 C 0.51 12.25 8.08 70.33 0.57 12.82 16 23 O -0.51 -15.40 10.62 27.79 0.30 -15.11 16 24 O -0.49 -7.40 12.70 -56.24 -0.71 -8.11 16 25 C -0.10 -3.79 5.50 30.66 0.17 -3.62 16 26 C -0.02 -0.93 5.52 30.11 0.17 -0.77 16 27 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 28 H 0.00 0.23 8.14 -2.39 -0.02 0.22 16 29 H 0.02 1.40 7.08 -2.39 -0.02 1.38 16 30 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.42 14.11 7.62 -96.74 -0.74 13.37 16 33 H 0.15 3.31 7.34 -2.91 -0.02 3.29 16 34 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 36 H 0.17 1.60 7.63 -2.91 -0.02 1.58 16 37 H 0.44 2.94 9.11 -74.07 -0.67 2.27 16 38 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.04 1.89 4.64 -2.39 -0.01 1.87 16 41 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -77.41 344.51 -0.99 -78.40 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -0.45 Total: 18.00 kcal Atomic # 6 Polarization: -38.62 SS G_CDS: 2.63 Total: -35.99 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -0.44 Total: -93.39 kcal Atomic # 8 Polarization: -99.58 SS G_CDS: -4.37 Total: -103.95 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.91 Total: 43.67 kcal Atomic # 16 Polarization: 93.53 SS G_CDS: -0.27 Total: 93.26 kcal Total: -77.41 -0.99 -78.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198797074.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.118 kcal (2) G-P(sol) polarization free energy of solvation -77.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds