Wall clock time and date at job start Tue Mar 31 2020 22:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99973 * 2 1 4 4 H 1.48506 * 109.46936 * 243.75570 * 3 2 1 5 5 H 1.48502 * 109.47121 * 3.75182 * 3 2 1 6 6 H 1.48497 * 109.47241 * 123.75762 * 3 2 1 7 7 C 1.37875 * 120.00036 * 179.72109 * 2 1 3 8 8 H 1.07998 * 119.99727 * 173.76407 * 7 2 1 9 9 C 1.50702 * 119.99724 * 353.76637 * 7 2 1 10 10 N 1.46493 * 110.01670 * 64.52882 * 9 7 2 11 11 S 1.65606 * 120.00559 * 60.21406 * 10 9 7 12 12 O 1.42094 * 106.39953 * 46.03021 * 11 10 9 13 13 O 1.42101 * 106.40136 * 178.95489 * 11 10 9 14 14 C 1.76199 * 107.21638 * 292.49431 * 11 10 9 15 15 C 1.37961 * 120.07556 * 117.41146 * 14 11 10 16 16 C 1.38354 * 120.14751 * 179.72175 * 15 14 11 17 17 C 1.38386 * 120.30122 * 0.55441 * 16 15 14 18 18 C 1.37915 * 120.15455 * 359.72274 * 17 16 15 19 19 C 1.39612 * 120.07581 * 297.68422 * 14 11 10 20 20 C 1.47724 * 120.14911 * 359.97438 * 19 14 11 21 21 O 1.21469 * 120.00044 * 5.98543 * 20 19 14 22 22 O 1.34717 * 120.00049 * 185.99017 * 20 19 14 23 23 C 1.54259 * 110.03354 * 303.08052 * 9 7 2 24 24 C 1.54888 * 104.19531 * 217.10721 * 23 9 7 25 25 C 1.54890 * 102.75233 * 37.94434 * 24 23 9 26 26 C 1.53879 * 110.02826 * 185.91303 * 9 7 2 27 27 H 0.97001 * 120.00037 * 5.09217 * 1 2 3 28 28 H 0.97003 * 120.00067 * 240.21221 * 10 9 7 29 29 H 1.07993 * 119.92537 * 359.97438 * 15 14 11 30 30 H 1.08003 * 119.84739 * 180.25593 * 16 15 14 31 31 H 1.08004 * 119.92241 * 179.74740 * 17 16 15 32 32 H 1.07999 * 120.07843 * 179.97438 * 18 17 16 33 33 H 0.96695 * 117.00385 * 179.97438 * 22 20 19 34 34 H 1.08999 * 110.48549 * 335.78517 * 23 9 7 35 35 H 1.08999 * 110.48590 * 98.42658 * 23 9 7 36 36 H 1.08994 * 110.75903 * 279.62572 * 24 23 9 37 37 H 1.09008 * 110.91605 * 156.33241 * 24 23 9 38 38 H 1.08992 * 110.49142 * 203.38166 * 25 24 23 39 39 H 1.09002 * 110.48631 * 80.72626 * 25 24 23 40 40 H 1.08999 * 110.03324 * 238.56868 * 26 9 7 41 41 H 1.09001 * 110.03196 * 0.02562 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.0328 1.7368 -1.2558 5 1 1.2867 2.7450 0.0916 6 1 3.1704 1.6575 1.1640 7 6 2.0045 -1.1940 0.0058 8 1 3.0797 -1.1972 -0.0958 9 6 1.2577 -2.4945 0.1539 10 7 0.3812 -2.7037 -1.0012 11 16 1.0261 -2.8002 -2.5234 12 8 2.1456 -3.6702 -2.4304 13 8 -0.0634 -3.0271 -3.4071 14 6 1.6656 -1.2072 -2.9208 15 6 3.0155 -1.0424 -3.1532 16 6 3.5184 0.2067 -3.4709 17 6 2.6743 1.3007 -3.5468 18 6 1.3237 1.1512 -3.3113 19 6 0.8083 -0.1078 -2.9957 20 6 -0.6374 -0.2757 -2.7428 21 8 -1.0672 -1.3466 -2.3633 22 8 -1.4791 0.7588 -2.9331 23 6 0.4269 -2.4819 1.4536 24 6 0.5277 -3.9340 1.9830 25 6 1.9910 -4.3182 1.6507 26 6 2.2521 -3.6621 0.2791 27 1 -0.4850 0.8367 -0.0746 28 1 -0.5770 -2.7858 -0.8743 29 1 3.6804 -1.8910 -3.0909 30 1 4.5754 0.3295 -3.6560 31 1 3.0741 2.2738 -3.7913 32 1 0.6661 2.0059 -3.3704 33 1 -2.4163 0.6008 -2.7549 34 1 0.8544 -1.7831 2.1727 35 1 -0.6106 -2.2245 1.2407 36 1 -0.1713 -4.5856 1.4589 37 1 0.3539 -3.9690 3.0586 38 1 2.0948 -5.4010 1.5815 39 1 2.6710 -3.9159 2.4016 40 1 2.0820 -4.3848 -0.5189 41 1 3.2749 -3.2880 0.2332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198820818.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:00 Heat of formation + Delta-G solvation = -121.903173 kcal Electronic energy + Delta-G solvation = -30787.907650 eV Core-core repulsion = 26760.338772 eV Total energy + Delta-G solvation = -4027.568879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.77905 -38.06885 -37.68807 -36.13527 -35.18444 -34.72486 -32.93044 -31.43235 -30.90841 -30.73899 -27.66248 -27.01873 -24.32576 -23.90366 -22.53267 -20.93425 -19.81667 -19.11629 -18.40211 -17.57795 -17.22023 -16.88942 -15.92177 -15.89813 -15.19216 -14.86108 -14.72861 -14.48688 -14.38824 -14.03344 -13.82058 -13.67375 -13.03528 -12.66421 -12.62953 -12.19375 -11.95669 -11.72473 -11.50834 -11.23830 -11.15052 -11.03647 -10.95391 -10.84569 -10.62957 -10.56887 -10.22823 -10.08297 -10.03643 -9.86248 -9.78799 -9.62611 -9.36170 -9.24019 -9.03738 -8.54320 -8.26041 -7.77585 -6.25166 -4.36387 1.08725 1.58167 1.78889 3.14332 3.21756 3.26437 3.30082 3.60918 4.11781 4.23485 4.30364 4.86249 5.07105 5.20692 5.23641 5.41478 5.62923 5.70231 5.79319 5.80978 5.89164 6.05332 6.09938 6.34389 6.46778 6.52198 6.52762 6.61366 6.66533 6.73483 6.74167 6.84276 6.94645 7.01295 7.11795 7.21821 7.25063 7.38361 7.45745 7.57868 7.79925 8.24443 8.50276 8.68538 8.82857 9.30533 10.72532 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012130 B = 0.008176 C = 0.007239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.813971 B = 3423.854731 C = 3866.995495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.087 3.913 3 Si 0.857 3.143 4 H -0.248 1.248 5 H -0.288 1.288 6 H -0.280 1.280 7 C -0.522 4.522 8 H 0.065 0.935 9 C 0.294 3.706 10 N -1.056 6.056 11 S 2.706 3.294 12 O -0.988 6.988 13 O -0.982 6.982 14 C -0.571 4.571 15 C -0.029 4.029 16 C -0.121 4.121 17 C -0.090 4.090 18 C -0.102 4.102 19 C -0.002 4.002 20 C 0.524 3.476 21 O -0.473 6.473 22 O -0.519 6.519 23 C -0.082 4.082 24 C -0.134 4.134 25 C -0.119 4.119 26 C -0.140 4.140 27 H 0.262 0.738 28 H 0.407 0.593 29 H 0.141 0.859 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.408 0.592 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.308 1.816 -3.283 3.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.120 4.120 3 Si 0.684 3.316 4 H -0.172 1.172 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.561 4.561 8 H 0.084 0.916 9 C 0.208 3.792 10 N -0.818 5.818 11 S 2.794 3.206 12 O -0.978 6.978 13 O -0.973 6.973 14 C -0.655 4.655 15 C -0.048 4.048 16 C -0.140 4.140 17 C -0.108 4.108 18 C -0.121 4.121 19 C -0.005 4.005 20 C 0.367 3.633 21 O -0.360 6.360 22 O -0.331 6.331 23 C -0.123 4.123 24 C -0.171 4.171 25 C -0.157 4.157 26 C -0.179 4.179 27 H 0.072 0.928 28 H 0.243 0.757 29 H 0.159 0.841 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.148 0.852 33 H 0.266 0.734 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.653 0.998 -3.765 4.231 hybrid contribution -0.302 2.089 0.602 2.195 sum 1.352 3.087 -3.162 4.622 Atomic orbital electron populations 1.70055 1.05762 1.26915 1.45132 1.24938 0.94656 0.98706 0.93660 0.87232 0.80756 0.83532 0.80075 1.17243 1.21375 1.20552 1.21693 0.93840 0.90342 1.50249 0.91647 1.18369 0.86187 0.91372 0.83280 1.55780 1.17436 1.88143 1.20409 1.01293 0.72456 0.73248 0.73634 1.93472 1.54744 1.62263 1.87362 1.93509 1.53041 1.85174 1.65531 1.31134 1.02169 1.23266 1.08965 1.20732 0.92956 0.98061 0.93054 1.21261 0.99539 0.92994 1.00222 1.21072 0.93407 0.98544 0.97774 1.21306 0.95772 0.96517 0.98554 1.18262 0.89001 0.93798 0.99439 1.20460 0.86863 0.81373 0.74623 1.90757 1.77680 1.26825 1.40695 1.84442 1.23354 1.42496 1.82780 1.22283 1.00581 0.92684 0.96707 1.22635 0.96406 0.99209 0.98882 1.22300 0.96671 0.98531 0.98208 1.22950 1.00224 0.98519 0.96226 0.92791 0.75712 0.84113 0.85801 0.86067 0.85222 0.73432 0.91961 0.91584 0.92711 0.93436 0.93463 0.92692 0.90701 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.68 9.40 55.43 0.52 -19.16 16 2 C 0.09 2.01 3.28 -17.82 -0.06 1.95 16 3 Si 0.86 18.54 27.63 -169.99 -4.70 13.84 16 4 H -0.25 -4.97 4.66 56.52 0.26 -4.70 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.52 -12.14 5.81 -34.44 -0.20 -12.34 16 8 H 0.07 1.56 7.35 -52.49 -0.39 1.17 16 9 C 0.29 6.44 0.61 -131.86 -0.08 6.36 16 10 N -1.06 -23.40 3.79 0.51 0.00 -23.40 16 11 S 2.71 60.69 4.78 -107.50 -0.51 60.18 16 12 O -0.99 -22.61 13.79 -57.17 -0.79 -23.40 16 13 O -0.98 -23.93 15.29 -67.21 -1.03 -24.96 16 14 C -0.57 -11.94 3.78 -39.17 -0.15 -12.09 16 15 C -0.03 -0.54 9.40 -39.64 -0.37 -0.91 16 16 C -0.12 -1.95 9.85 -39.48 -0.39 -2.33 16 17 C -0.09 -1.43 7.90 -39.65 -0.31 -1.74 16 18 C -0.10 -1.83 7.90 -39.17 -0.31 -2.14 16 19 C 0.00 -0.05 4.03 -104.98 -0.42 -0.47 16 20 C 0.52 10.77 6.21 34.61 0.21 10.99 16 21 O -0.47 -10.62 10.22 -27.43 -0.28 -10.90 16 22 O -0.52 -8.67 12.70 -40.54 -0.51 -9.19 16 23 C -0.08 -1.73 4.91 -25.08 -0.12 -1.85 16 24 C -0.13 -2.41 6.91 -24.74 -0.17 -2.58 16 25 C -0.12 -2.15 6.83 -25.07 -0.17 -2.32 16 26 C -0.14 -2.92 5.27 -25.61 -0.13 -3.05 16 27 H 0.26 6.11 8.32 -40.82 -0.34 5.77 16 28 H 0.41 9.08 6.95 -34.47 -0.24 8.84 16 29 H 0.14 2.44 7.34 -52.49 -0.39 2.05 16 30 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 31 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 32 H 0.13 2.09 7.63 -52.49 -0.40 1.69 16 33 H 0.41 5.03 9.11 45.56 0.42 5.44 16 34 H 0.06 1.38 7.83 -51.93 -0.41 0.97 16 35 H 0.07 1.45 7.48 -51.93 -0.39 1.06 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.62 5.76 -51.93 -0.30 1.32 16 41 H 0.06 1.28 7.38 -51.93 -0.38 0.90 16 LS Contribution 322.99 15.07 4.87 4.87 Total: -1.00 -28.61 322.99 -9.39 -38.01 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -4.28 Total: 16.64 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -2.68 Total: -22.53 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.52 Total: -42.55 kcal Atomic # 8 Polarization: -65.83 SS G_CDS: -2.61 Total: -68.44 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -4.70 Total: 13.84 kcal Atomic # 16 Polarization: 60.69 SS G_CDS: -0.51 Total: 60.18 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.61 -9.39 -38.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198820818.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.898 kcal (2) G-P(sol) polarization free energy of solvation -28.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds