Wall clock time and date at job start Tue Mar 31 2020 22:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99973 * 2 1 4 4 H 1.48506 * 109.46936 * 243.75570 * 3 2 1 5 5 H 1.48502 * 109.47121 * 3.75182 * 3 2 1 6 6 H 1.48497 * 109.47241 * 123.75762 * 3 2 1 7 7 C 1.37875 * 120.00036 * 179.72109 * 2 1 3 8 8 H 1.07998 * 119.99727 * 173.76407 * 7 2 1 9 9 C 1.50702 * 119.99724 * 353.76637 * 7 2 1 10 10 N 1.46493 * 110.01670 * 64.52882 * 9 7 2 11 11 S 1.65606 * 120.00559 * 60.21406 * 10 9 7 12 12 O 1.42094 * 106.39953 * 46.03021 * 11 10 9 13 13 O 1.42101 * 106.40136 * 178.95489 * 11 10 9 14 14 C 1.76199 * 107.21638 * 292.49431 * 11 10 9 15 15 C 1.37961 * 120.07556 * 117.41146 * 14 11 10 16 16 C 1.38354 * 120.14751 * 179.72175 * 15 14 11 17 17 C 1.38386 * 120.30122 * 0.55441 * 16 15 14 18 18 C 1.37915 * 120.15455 * 359.72274 * 17 16 15 19 19 C 1.39612 * 120.07581 * 297.68422 * 14 11 10 20 20 C 1.47724 * 120.14911 * 359.97438 * 19 14 11 21 21 O 1.21469 * 120.00044 * 5.98543 * 20 19 14 22 22 O 1.34717 * 120.00049 * 185.99017 * 20 19 14 23 23 C 1.54259 * 110.03354 * 303.08052 * 9 7 2 24 24 C 1.54888 * 104.19531 * 217.10721 * 23 9 7 25 25 C 1.54890 * 102.75233 * 37.94434 * 24 23 9 26 26 C 1.53879 * 110.02826 * 185.91303 * 9 7 2 27 27 H 0.97001 * 120.00037 * 5.09217 * 1 2 3 28 28 H 0.97003 * 120.00067 * 240.21221 * 10 9 7 29 29 H 1.07993 * 119.92537 * 359.97438 * 15 14 11 30 30 H 1.08003 * 119.84739 * 180.25593 * 16 15 14 31 31 H 1.08004 * 119.92241 * 179.74740 * 17 16 15 32 32 H 1.07999 * 120.07843 * 179.97438 * 18 17 16 33 33 H 0.96695 * 117.00385 * 179.97438 * 22 20 19 34 34 H 1.08999 * 110.48549 * 335.78517 * 23 9 7 35 35 H 1.08999 * 110.48590 * 98.42658 * 23 9 7 36 36 H 1.08994 * 110.75903 * 279.62572 * 24 23 9 37 37 H 1.09008 * 110.91605 * 156.33241 * 24 23 9 38 38 H 1.08992 * 110.49142 * 203.38166 * 25 24 23 39 39 H 1.09002 * 110.48631 * 80.72626 * 25 24 23 40 40 H 1.08999 * 110.03324 * 238.56868 * 26 9 7 41 41 H 1.09001 * 110.03196 * 0.02562 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.0328 1.7368 -1.2558 5 1 1.2867 2.7450 0.0916 6 1 3.1704 1.6575 1.1640 7 6 2.0045 -1.1940 0.0058 8 1 3.0797 -1.1972 -0.0958 9 6 1.2577 -2.4945 0.1539 10 7 0.3812 -2.7037 -1.0012 11 16 1.0261 -2.8002 -2.5234 12 8 2.1456 -3.6702 -2.4304 13 8 -0.0634 -3.0271 -3.4071 14 6 1.6656 -1.2072 -2.9208 15 6 3.0155 -1.0424 -3.1532 16 6 3.5184 0.2067 -3.4709 17 6 2.6743 1.3007 -3.5468 18 6 1.3237 1.1512 -3.3113 19 6 0.8083 -0.1078 -2.9957 20 6 -0.6374 -0.2757 -2.7428 21 8 -1.0672 -1.3466 -2.3633 22 8 -1.4791 0.7588 -2.9331 23 6 0.4269 -2.4819 1.4536 24 6 0.5277 -3.9340 1.9830 25 6 1.9910 -4.3182 1.6507 26 6 2.2521 -3.6621 0.2791 27 1 -0.4850 0.8367 -0.0746 28 1 -0.5770 -2.7858 -0.8743 29 1 3.6804 -1.8910 -3.0909 30 1 4.5754 0.3295 -3.6560 31 1 3.0741 2.2738 -3.7913 32 1 0.6661 2.0059 -3.3704 33 1 -2.4163 0.6008 -2.7549 34 1 0.8544 -1.7831 2.1727 35 1 -0.6106 -2.2245 1.2407 36 1 -0.1713 -4.5856 1.4589 37 1 0.3539 -3.9690 3.0586 38 1 2.0948 -5.4010 1.5815 39 1 2.6710 -3.9159 2.4016 40 1 2.0820 -4.3848 -0.5189 41 1 3.2749 -3.2880 0.2332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198820818.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:59 Heat of formation + Delta-G solvation = -141.178233 kcal Electronic energy + Delta-G solvation = -30788.743480 eV Core-core repulsion = 26760.338772 eV Total energy + Delta-G solvation = -4028.404708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.26212 -39.51529 -39.29121 -37.83344 -36.73054 -36.52430 -34.60026 -33.11778 -32.31207 -32.14093 -29.28443 -28.69903 -25.82609 -25.52601 -23.93915 -22.38820 -21.34222 -20.80114 -20.03178 -19.07368 -18.75120 -18.59061 -17.65453 -17.40895 -16.78861 -16.52490 -16.27346 -15.99158 -15.82341 -15.55884 -15.37096 -15.19666 -14.72337 -14.11759 -14.08138 -13.78093 -13.54152 -13.27884 -13.15078 -12.90471 -12.82432 -12.70017 -12.56477 -12.48703 -12.24004 -12.16694 -11.87755 -11.64063 -11.60088 -11.46156 -11.41973 -11.19559 -11.03320 -10.90995 -10.64164 -9.96597 -9.78720 -9.47164 -7.98893 -6.15020 -0.36228 0.05504 0.24018 1.44854 1.49776 1.53046 1.80968 2.21871 2.47581 2.52755 2.77875 3.19076 3.36865 3.72322 4.01773 4.10505 4.15901 4.16977 4.26672 4.34565 4.52869 4.61929 4.72441 4.93933 4.98452 5.00274 5.09375 5.17527 5.20847 5.25041 5.31177 5.34291 5.37044 5.40262 5.55677 5.64059 5.76492 5.80859 5.83967 5.92311 6.08929 6.51961 6.86083 6.98145 7.21893 7.54127 8.97014 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012130 B = 0.008176 C = 0.007239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.813971 B = 3423.854731 C = 3866.995495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.070 3.930 3 Si 0.885 3.115 4 H -0.220 1.220 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.289 3.711 10 N -1.056 6.056 11 S 2.709 3.291 12 O -1.002 7.002 13 O -1.010 7.010 14 C -0.590 4.590 15 C -0.043 4.043 16 C -0.112 4.112 17 C -0.083 4.083 18 C -0.108 4.108 19 C -0.025 4.025 20 C 0.519 3.481 21 O -0.501 6.501 22 O -0.509 6.509 23 C -0.077 4.077 24 C -0.126 4.126 25 C -0.114 4.114 26 C -0.142 4.142 27 H 0.257 0.743 28 H 0.403 0.597 29 H 0.145 0.855 30 H 0.166 0.834 31 H 0.165 0.835 32 H 0.146 0.854 33 H 0.426 0.574 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.650 3.214 -3.625 5.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.135 4.135 3 Si 0.711 3.289 4 H -0.143 1.143 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.573 4.573 8 H 0.072 0.928 9 C 0.203 3.797 10 N -0.816 5.816 11 S 2.800 3.200 12 O -0.992 6.992 13 O -1.000 7.000 14 C -0.678 4.678 15 C -0.062 4.062 16 C -0.131 4.131 17 C -0.101 4.101 18 C -0.127 4.127 19 C -0.028 4.028 20 C 0.363 3.637 21 O -0.390 6.390 22 O -0.322 6.322 23 C -0.117 4.117 24 C -0.164 4.164 25 C -0.152 4.152 26 C -0.181 4.181 27 H 0.066 0.934 28 H 0.238 0.762 29 H 0.163 0.837 30 H 0.183 0.817 31 H 0.182 0.818 32 H 0.164 0.836 33 H 0.286 0.714 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.976 2.375 -4.119 5.609 hybrid contribution -0.704 1.748 0.626 1.986 sum 2.272 4.123 -3.493 5.862 Atomic orbital electron populations 1.70138 1.06211 1.26634 1.45949 1.25209 0.94978 0.99940 0.93413 0.86825 0.79946 0.81540 0.80579 1.14272 1.22247 1.22288 1.21656 0.93254 0.91124 1.51314 0.92806 1.18460 0.86412 0.91423 0.83426 1.55623 1.17093 1.88391 1.20509 1.00858 0.71942 0.73884 0.73307 1.93444 1.54799 1.63523 1.87473 1.93462 1.54190 1.86106 1.66279 1.30796 1.03481 1.22213 1.11294 1.20992 0.92133 0.99749 0.93308 1.21752 1.01715 0.91667 0.97951 1.21635 0.92476 1.00416 0.95607 1.21623 0.97197 0.95876 0.97967 1.18451 0.88874 0.94817 1.00650 1.20747 0.87606 0.81443 0.73927 1.90739 1.78256 1.27954 1.42070 1.84390 1.24563 1.41079 1.82164 1.22143 0.99119 0.94346 0.96116 1.22589 0.96580 0.97003 1.00212 1.22287 0.96719 0.99614 0.96592 1.22918 0.99454 0.98061 0.97661 0.93362 0.76165 0.83731 0.81676 0.81795 0.83596 0.71385 0.93583 0.93247 0.92286 0.91206 0.91433 0.91757 0.91925 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -40.05 9.40 21.45 0.20 -39.85 16 2 C 0.07 3.22 3.28 84.65 0.28 3.50 16 3 Si 0.88 36.59 27.63 68.60 1.90 38.48 16 4 H -0.22 -7.92 4.66 99.48 0.46 -7.46 16 5 H -0.30 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.30 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.53 -24.91 5.81 25.60 0.15 -24.76 16 8 H 0.05 2.58 7.35 -2.91 -0.02 2.56 16 9 C 0.29 12.79 0.61 3.58 0.00 12.79 16 10 N -1.06 -47.87 3.79 -152.31 -0.58 -48.45 16 11 S 2.71 124.04 4.78 -56.49 -0.27 123.77 16 12 O -1.00 -46.80 13.79 -128.00 -1.77 -48.57 16 13 O -1.01 -50.70 15.29 -118.41 -1.81 -52.51 16 14 C -0.59 -24.42 3.78 22.54 0.09 -24.33 16 15 C -0.04 -1.51 9.40 22.23 0.21 -1.30 16 16 C -0.11 -3.16 9.85 22.33 0.22 -2.94 16 17 C -0.08 -2.29 7.90 22.23 0.18 -2.11 16 18 C -0.11 -3.53 7.90 22.54 0.18 -3.35 16 19 C -0.03 -1.01 4.03 -20.10 -0.08 -1.09 16 20 C 0.52 21.26 6.21 70.33 0.44 21.70 16 21 O -0.50 -22.97 10.22 27.77 0.28 -22.69 16 22 O -0.51 -16.53 12.70 -56.27 -0.71 -17.25 16 23 C -0.08 -3.25 4.91 31.67 0.16 -3.09 16 24 C -0.13 -4.40 6.91 31.89 0.22 -4.18 16 25 C -0.11 -3.97 6.83 31.67 0.22 -3.76 16 26 C -0.14 -5.91 5.27 31.32 0.16 -5.74 16 27 H 0.26 12.00 8.32 -92.71 -0.77 11.22 16 28 H 0.40 18.67 6.95 -96.74 -0.67 17.99 16 29 H 0.14 4.89 7.34 -2.91 -0.02 4.86 16 30 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 32 H 0.15 4.23 7.63 -2.91 -0.02 4.21 16 33 H 0.43 10.17 9.11 -74.06 -0.67 9.50 16 34 H 0.05 2.05 7.83 -2.39 -0.02 2.03 16 35 H 0.05 2.21 7.48 -2.39 -0.02 2.20 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16 40 H 0.06 2.74 5.76 -2.39 -0.01 2.73 16 41 H 0.05 2.22 7.38 -2.39 -0.02 2.21 16 Total: -1.00 -62.42 322.99 -0.85 -63.27 By element: Atomic # 1 Polarization: 42.95 SS G_CDS: -0.50 Total: 42.45 kcal Atomic # 6 Polarization: -41.08 SS G_CDS: 2.41 Total: -38.67 kcal Atomic # 7 Polarization: -87.92 SS G_CDS: -0.38 Total: -88.29 kcal Atomic # 8 Polarization: -137.00 SS G_CDS: -4.01 Total: -141.01 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 1.90 Total: 38.48 kcal Atomic # 16 Polarization: 124.04 SS G_CDS: -0.27 Total: 123.77 kcal Total: -62.42 -0.85 -63.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198820818.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.912 kcal (2) G-P(sol) polarization free energy of solvation -62.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds