Wall clock time and date at job start Tue Mar 31 2020 22:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99720 * 2 1 4 4 H 1.48492 * 109.47543 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47024 * 120.00504 * 3 2 1 6 6 H 1.48509 * 109.46832 * 240.00021 * 3 2 1 7 7 C 1.37873 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99489 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00378 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47361 * 180.02562 * 9 7 2 11 11 C 1.47485 * 110.99821 * 265.97026 * 10 9 7 12 12 C 1.53508 * 87.93086 * 221.29459 * 11 10 9 13 13 O 1.42896 * 114.16923 * 139.66943 * 12 11 10 14 14 C 1.35899 * 117.00055 * 107.91497 * 13 12 11 15 15 C 1.38659 * 120.02633 * 353.94483 * 14 13 12 16 16 C 1.38616 * 119.89021 * 179.97438 * 15 14 13 17 17 O 1.35889 * 120.02420 * 180.02562 * 16 15 14 18 18 C 1.38793 * 119.94467 * 359.97438 * 16 15 14 19 19 N 1.48025 * 119.97007 * 180.02562 * 18 16 15 20 20 O 1.21805 * 119.99882 * 180.02562 * 19 18 16 21 21 O 1.21800 * 120.00277 * 0.02562 * 19 18 16 22 22 C 1.38156 * 120.05465 * 0.02562 * 18 16 15 23 23 C 1.38192 * 120.11188 * 359.74069 * 22 18 16 24 24 N 1.48022 * 119.97573 * 180.25897 * 23 22 18 25 25 O 1.21802 * 119.99859 * 0.25358 * 24 23 22 26 26 O 1.21802 * 120.00176 * 180.25399 * 24 23 22 27 27 C 1.47476 * 111.00208 * 169.99901 * 10 9 7 28 28 H 0.96996 * 119.99679 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46708 * 300.00157 * 9 7 2 30 30 H 1.08997 * 109.47048 * 59.99874 * 9 7 2 31 31 H 1.08999 * 113.47298 * 336.06189 * 11 10 9 32 32 H 1.08995 * 113.47551 * 106.52485 * 11 10 9 33 33 H 1.08999 * 114.34569 * 272.36308 * 12 11 10 34 34 H 1.08001 * 120.05349 * 359.97438 * 15 14 13 35 35 H 0.96697 * 114.00519 * 89.99970 * 17 16 15 36 36 H 1.08007 * 119.94107 * 179.97438 * 22 18 16 37 37 H 1.08995 * 113.47541 * 253.46632 * 27 10 9 38 38 H 1.09003 * 113.47309 * 23.87604 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6964 -1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 2.4755 -4.0803 -1.3740 12 6 2.4190 -5.5181 -0.8393 13 8 1.7491 -6.4379 -1.7036 14 6 2.5218 -7.3442 -2.3581 15 6 3.9036 -7.2692 -2.2713 16 6 4.6890 -8.1954 -2.9397 17 8 6.0435 -8.1247 -2.8561 18 6 4.0908 -9.1956 -3.6934 19 7 4.9290 -10.1853 -4.4069 20 8 4.4046 -11.0630 -5.0690 21 8 6.1431 -10.1220 -4.3320 22 6 2.7138 -9.2682 -3.7784 23 6 1.9285 -8.3489 -3.1091 24 7 0.4533 -8.4330 -3.1975 25 8 -0.0680 -9.3150 -3.8562 26 8 -0.2393 -7.6203 -2.6115 27 6 1.5185 -4.8985 0.2386 28 1 -0.4849 0.8400 0.0004 29 1 0.6247 -2.5570 0.8897 30 1 0.6240 -2.5567 -0.8903 31 1 1.6755 -3.8465 -2.0765 32 1 3.4596 -3.7930 -1.7441 33 1 3.3701 -5.8954 -0.4634 34 1 4.3671 -6.4904 -1.6840 35 1 6.4192 -8.6301 -2.1223 36 1 2.2503 -10.0471 -4.3658 37 1 1.6916 -5.3047 1.2351 38 1 0.4629 -4.8828 -0.0327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231224075.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:47 Heat of formation + Delta-G solvation = -0.050501 kcal Electronic energy + Delta-G solvation = -29019.848399 eV Core-core repulsion = 24451.270235 eV Total energy + Delta-G solvation = -4568.578165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.104 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.92908 -42.40410 -41.28062 -40.05403 -38.57593 -37.38317 -36.80484 -36.62291 -33.08706 -32.12361 -32.05650 -29.66045 -27.21569 -26.59664 -25.99391 -25.54755 -23.96981 -22.96822 -21.90079 -20.68711 -20.06096 -19.80914 -19.32325 -18.96424 -18.74035 -18.15493 -17.80984 -17.62233 -16.85315 -16.49873 -16.11324 -15.94631 -15.46010 -15.10391 -14.67944 -14.49798 -14.04182 -13.78470 -12.98919 -12.65784 -12.48192 -12.37062 -12.32038 -11.99633 -11.80480 -11.75169 -11.54712 -11.53152 -11.36995 -11.32206 -11.15760 -10.85961 -10.70059 -10.49442 -10.41894 -10.03908 -9.65227 -9.46680 -8.61080 -8.29952 -6.18253 -4.21408 -0.92898 -0.74386 0.48921 0.58505 0.81185 1.03223 2.03759 2.13301 2.72032 3.23785 3.28787 3.30699 3.31812 3.45427 3.67851 4.05551 4.09177 4.25654 4.27542 4.39067 4.46468 4.58701 4.60500 4.99000 5.16920 5.28591 5.62508 5.68059 5.80339 5.81650 5.88469 5.97449 6.16183 6.42211 6.49731 6.90332 7.16234 7.34468 7.38767 7.56828 7.87205 8.19918 8.84764 9.43619 10.92555 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016005 B = 0.002628 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.011789 B =10652.613724 C =11920.321541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.064 0.936 9 C 0.161 3.839 10 N -0.456 5.456 11 C -0.001 4.001 12 C 0.020 3.980 13 O -0.248 6.248 14 C 0.270 3.730 15 C -0.245 4.245 16 C 0.272 3.728 17 O -0.463 6.463 18 C -0.127 4.127 19 N 0.040 4.960 20 O -0.162 6.162 21 O -0.132 6.132 22 C 0.063 3.937 23 C -0.101 4.101 24 N 0.036 4.964 25 O -0.167 6.167 26 O -0.112 6.112 27 C 0.010 3.990 28 H 0.264 0.736 29 H 0.035 0.965 30 H 0.010 0.990 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.185 0.815 35 H 0.419 0.581 36 H 0.190 0.810 37 H 0.092 0.908 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.641 -19.829 -4.132 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.212 1.212 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.552 4.552 8 H 0.082 0.918 9 C 0.035 3.965 10 N -0.181 5.181 11 C -0.130 4.130 12 C -0.035 4.035 13 O -0.154 6.154 14 C 0.216 3.784 15 C -0.265 4.265 16 C 0.223 3.777 17 O -0.277 6.277 18 C -0.213 4.213 19 N 0.560 4.440 20 O -0.375 6.375 21 O -0.352 6.352 22 C 0.043 3.957 23 C -0.187 4.187 24 N 0.558 4.442 25 O -0.377 6.377 26 O -0.336 6.336 27 C -0.119 4.119 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.028 0.972 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.202 0.798 35 H 0.282 0.718 36 H 0.207 0.793 37 H 0.110 0.890 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.028 -18.573 -3.787 20.995 hybrid contribution -0.227 0.355 -0.316 0.527 sum 8.801 -18.218 -4.104 20.644 Atomic orbital electron populations 1.69936 1.06090 1.27268 1.50212 1.25005 0.94922 0.99499 0.95120 0.86501 0.79423 0.82438 0.78718 1.21205 1.20075 1.20202 1.20982 0.93529 0.89545 1.51102 0.91823 1.20327 0.90376 0.88393 0.97361 1.69161 1.34107 1.01467 1.13391 1.24345 1.03729 0.89705 0.95266 1.25250 0.98359 0.87641 0.92246 1.86643 1.34797 1.40340 1.53635 1.18782 0.89855 0.84916 0.84814 1.21692 0.91038 1.05567 1.08226 1.17976 0.85120 0.87391 0.87197 1.84812 1.13076 1.74036 1.55783 1.21133 0.90810 0.98286 1.11023 1.43036 1.01327 1.00245 0.99358 1.94598 1.76434 1.27773 1.38686 1.94594 0.94893 1.78946 1.66804 1.20415 0.90270 0.94807 0.90174 1.20190 0.82374 1.03281 1.12815 1.43007 1.01751 1.00118 0.99367 1.94572 1.74586 1.28785 1.39738 1.94693 1.60199 1.35106 1.43580 1.24092 0.98415 0.92211 0.97211 0.92595 0.94704 0.97243 0.89907 0.89382 0.86394 0.79786 0.71827 0.79326 0.88957 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.63 13.29 55.43 0.74 -24.89 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.51 -13.70 9.39 -34.44 -0.32 -14.02 16 8 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 9 C 0.16 3.85 4.57 -4.98 -0.02 3.83 16 10 N -0.46 -8.48 6.32 -246.12 -1.55 -10.04 16 11 C 0.00 -0.02 7.55 -7.54 -0.06 -0.08 16 12 C 0.02 0.24 4.01 -26.20 -0.11 0.13 16 13 O -0.25 -2.94 8.19 -41.57 -0.34 -3.28 16 14 C 0.27 2.63 6.66 -39.23 -0.26 2.37 16 15 C -0.25 -1.78 8.96 -39.29 -0.35 -2.13 16 16 C 0.27 1.96 6.68 -39.24 -0.26 1.69 16 17 O -0.46 -2.77 11.51 -41.54 -0.48 -3.25 16 18 C -0.13 -1.09 6.87 -79.77 -0.55 -1.64 16 19 N 0.04 0.41 4.45 34.05 0.15 0.56 16 20 O -0.16 -1.83 18.44 -29.46 -0.54 -2.37 16 21 O -0.13 -1.41 17.23 -36.50 -0.63 -2.04 16 22 C 0.06 0.54 9.05 -39.63 -0.36 0.19 16 23 C -0.10 -1.04 6.87 -79.77 -0.55 -1.59 16 24 N 0.04 0.46 4.45 34.05 0.15 0.61 16 25 O -0.17 -2.17 18.44 -29.46 -0.54 -2.72 16 26 O -0.11 -1.65 17.23 -36.50 -0.63 -2.28 16 27 C 0.01 0.14 7.52 -7.55 -0.06 0.08 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.03 0.89 8.08 -51.93 -0.42 0.47 16 30 H 0.01 0.25 7.30 -51.93 -0.38 -0.13 16 31 H 0.08 1.39 7.42 -51.93 -0.39 1.01 16 32 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.12 1.00 6.00 -51.93 -0.31 0.69 16 34 H 0.19 1.04 5.93 -52.49 -0.31 0.72 16 35 H 0.42 0.47 9.06 45.56 0.41 0.88 16 36 H 0.19 1.43 7.15 -52.48 -0.38 1.05 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.08 1.31 7.91 -51.93 -0.41 0.90 16 LS Contribution 345.27 15.07 5.20 5.20 Total: -1.00 -32.01 345.27 -9.06 -41.06 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: -2.57 Total: -2.67 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -2.99 Total: -9.71 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: -0.51 Total: -33.76 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -3.16 Total: -15.94 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.01 -9.06 -41.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231224075.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.014 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds