Wall clock time and date at job start Tue Mar 31 2020 22:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99720 * 2 1 4 4 H 1.48492 * 109.47543 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47024 * 120.00504 * 3 2 1 6 6 H 1.48509 * 109.46832 * 240.00021 * 3 2 1 7 7 C 1.37873 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99489 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00378 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47361 * 180.02562 * 9 7 2 11 11 C 1.47485 * 110.99821 * 265.97026 * 10 9 7 12 12 C 1.53508 * 87.93086 * 221.29459 * 11 10 9 13 13 O 1.42896 * 114.16923 * 139.66943 * 12 11 10 14 14 C 1.35899 * 117.00055 * 107.91497 * 13 12 11 15 15 C 1.38659 * 120.02633 * 353.94483 * 14 13 12 16 16 C 1.38616 * 119.89021 * 179.97438 * 15 14 13 17 17 O 1.35889 * 120.02420 * 180.02562 * 16 15 14 18 18 C 1.38793 * 119.94467 * 359.97438 * 16 15 14 19 19 N 1.48025 * 119.97007 * 180.02562 * 18 16 15 20 20 O 1.21805 * 119.99882 * 180.02562 * 19 18 16 21 21 O 1.21800 * 120.00277 * 0.02562 * 19 18 16 22 22 C 1.38156 * 120.05465 * 0.02562 * 18 16 15 23 23 C 1.38192 * 120.11188 * 359.74069 * 22 18 16 24 24 N 1.48022 * 119.97573 * 180.25897 * 23 22 18 25 25 O 1.21802 * 119.99859 * 0.25358 * 24 23 22 26 26 O 1.21802 * 120.00176 * 180.25399 * 24 23 22 27 27 C 1.47476 * 111.00208 * 169.99901 * 10 9 7 28 28 H 0.96996 * 119.99679 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46708 * 300.00157 * 9 7 2 30 30 H 1.08997 * 109.47048 * 59.99874 * 9 7 2 31 31 H 1.08999 * 113.47298 * 336.06189 * 11 10 9 32 32 H 1.08995 * 113.47551 * 106.52485 * 11 10 9 33 33 H 1.08999 * 114.34569 * 272.36308 * 12 11 10 34 34 H 1.08001 * 120.05349 * 359.97438 * 15 14 13 35 35 H 0.96697 * 114.00519 * 89.99970 * 17 16 15 36 36 H 1.08007 * 119.94107 * 179.97438 * 22 18 16 37 37 H 1.08995 * 113.47541 * 253.46632 * 27 10 9 38 38 H 1.09003 * 113.47309 * 23.87604 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6964 -1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 2.4755 -4.0803 -1.3740 12 6 2.4190 -5.5181 -0.8393 13 8 1.7491 -6.4379 -1.7036 14 6 2.5218 -7.3442 -2.3581 15 6 3.9036 -7.2692 -2.2713 16 6 4.6890 -8.1954 -2.9397 17 8 6.0435 -8.1247 -2.8561 18 6 4.0908 -9.1956 -3.6934 19 7 4.9290 -10.1853 -4.4069 20 8 4.4046 -11.0630 -5.0690 21 8 6.1431 -10.1220 -4.3320 22 6 2.7138 -9.2682 -3.7784 23 6 1.9285 -8.3489 -3.1091 24 7 0.4533 -8.4330 -3.1975 25 8 -0.0680 -9.3150 -3.8562 26 8 -0.2393 -7.6203 -2.6115 27 6 1.5185 -4.8985 0.2386 28 1 -0.4849 0.8400 0.0004 29 1 0.6247 -2.5570 0.8897 30 1 0.6240 -2.5567 -0.8903 31 1 1.6755 -3.8465 -2.0765 32 1 3.4596 -3.7930 -1.7441 33 1 3.3701 -5.8954 -0.4634 34 1 4.3671 -6.4904 -1.6840 35 1 6.4192 -8.6301 -2.1223 36 1 2.2503 -10.0471 -4.3658 37 1 1.6916 -5.3047 1.2351 38 1 0.4629 -4.8828 -0.0327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231224075.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:46 Heat of formation + Delta-G solvation = -22.343326 kcal Electronic energy + Delta-G solvation = -29020.815089 eV Core-core repulsion = 24451.270235 eV Total energy + Delta-G solvation = -4569.544854 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.104 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.74060 -43.27746 -42.20193 -40.97435 -39.47425 -38.20100 -37.70357 -37.48105 -35.06962 -32.95872 -32.75004 -31.27703 -28.12969 -27.69898 -27.21281 -26.80096 -25.02331 -23.80778 -23.32532 -21.54417 -21.18864 -20.52076 -20.19959 -19.79121 -19.60395 -18.96907 -18.72784 -18.68294 -18.23527 -17.56786 -17.12436 -16.81207 -16.65483 -16.16987 -15.88185 -15.50503 -15.24377 -14.84427 -14.23510 -13.97083 -13.79076 -13.73464 -13.17750 -12.99903 -12.88698 -12.83640 -12.79107 -12.54436 -12.45274 -12.37755 -12.37055 -12.24312 -12.17062 -11.86999 -11.71834 -11.31002 -11.07064 -10.64433 -10.49695 -9.88768 -8.25580 -6.36488 -1.69217 -1.52453 -0.31631 -0.20971 -0.05108 0.21710 1.20752 1.40531 1.41498 1.42820 1.51153 2.13700 2.37412 2.62652 2.74029 2.92171 3.02114 3.08504 3.18492 3.33436 3.53340 3.78626 3.85512 3.87646 4.08123 4.38301 4.43440 4.52377 4.54892 4.69916 4.79069 4.95431 4.99782 5.03772 5.49108 5.56846 5.68013 5.96559 6.22443 6.28048 6.28269 6.33124 6.77690 7.33605 8.85435 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016005 B = 0.002628 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.011789 B =10652.613724 C =11920.321541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.285 1.285 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.066 0.934 9 C 0.175 3.825 10 N -0.468 5.468 11 C -0.011 4.011 12 C 0.056 3.944 13 O -0.266 6.266 14 C 0.264 3.736 15 C -0.228 4.228 16 C 0.296 3.704 17 O -0.465 6.465 18 C -0.126 4.126 19 N 0.040 4.960 20 O -0.190 6.190 21 O -0.127 6.127 22 C 0.074 3.926 23 C -0.108 4.108 24 N 0.038 4.962 25 O -0.160 6.160 26 O -0.166 6.166 27 C 0.001 3.999 28 H 0.265 0.735 29 H 0.006 0.994 30 H -0.019 1.019 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.165 0.835 34 H 0.211 0.789 35 H 0.442 0.558 36 H 0.197 0.803 37 H 0.116 0.884 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.936 -20.531 -4.025 24.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.211 1.211 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.565 4.565 8 H 0.084 0.916 9 C 0.048 3.952 10 N -0.192 5.192 11 C -0.140 4.140 12 C 0.001 3.999 13 O -0.174 6.174 14 C 0.211 3.789 15 C -0.248 4.248 16 C 0.247 3.753 17 O -0.283 6.283 18 C -0.212 4.212 19 N 0.559 4.441 20 O -0.396 6.396 21 O -0.350 6.350 22 C 0.054 3.946 23 C -0.194 4.194 24 N 0.554 4.446 25 O -0.376 6.376 26 O -0.378 6.378 27 C -0.128 4.128 28 H 0.074 0.926 29 H 0.024 0.976 30 H -0.001 1.001 31 H 0.076 0.924 32 H 0.125 0.875 33 H 0.182 0.818 34 H 0.227 0.773 35 H 0.310 0.690 36 H 0.214 0.786 37 H 0.134 0.866 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.291 -19.276 -3.641 23.149 hybrid contribution -1.106 0.409 -0.423 1.253 sum 11.185 -18.867 -4.064 22.307 Atomic orbital electron populations 1.70073 1.07794 1.28148 1.51437 1.25943 0.95736 1.03370 0.94692 0.85422 0.78140 0.77775 0.79228 1.21073 1.19088 1.19174 1.21383 0.93804 0.90876 1.50480 0.91604 1.19946 0.90516 0.90126 0.94599 1.68986 1.32803 1.01523 1.15894 1.24372 1.03691 0.92648 0.93255 1.24943 0.98836 0.86090 0.90039 1.86627 1.35615 1.40860 1.54292 1.18915 0.90729 0.84401 0.84843 1.21814 0.89447 1.05705 1.07787 1.17901 0.85780 0.86068 0.85579 1.84777 1.11935 1.74495 1.57130 1.21180 0.90516 0.98312 1.11220 1.43199 1.01378 1.00318 0.99237 1.94613 1.76464 1.28734 1.39822 1.94579 0.95234 1.78768 1.66441 1.20422 0.90323 0.94340 0.89501 1.20160 0.80387 1.04541 1.14298 1.43328 1.02985 0.99533 0.98707 1.94537 1.75613 1.28388 1.39053 1.94705 1.61477 1.36195 1.45433 1.24132 0.97891 0.90884 0.99871 0.92591 0.97558 1.00126 0.92410 0.87505 0.81754 0.77274 0.68965 0.78559 0.86569 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.01 13.29 21.45 0.28 -54.73 16 2 C 0.00 0.05 5.46 84.65 0.46 0.52 16 3 Si 0.97 42.73 29.54 68.60 2.03 44.76 16 4 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.53 -28.58 9.39 25.60 0.24 -28.34 16 8 H 0.07 3.46 7.81 -2.91 -0.02 3.43 16 9 C 0.18 8.73 4.57 85.56 0.39 9.12 16 10 N -0.47 -17.36 6.32 -932.97 -5.89 -23.25 16 11 C -0.01 -0.31 7.55 83.57 0.63 0.32 16 12 C 0.06 1.17 4.01 30.94 0.12 1.29 16 13 O -0.27 -5.99 8.19 -71.23 -0.58 -6.57 16 14 C 0.26 4.51 6.66 22.49 0.15 4.66 16 15 C -0.23 -2.31 8.96 22.46 0.20 -2.11 16 16 C 0.30 3.01 6.68 22.49 0.15 3.16 16 17 O -0.46 -3.33 11.51 -71.13 -0.82 -4.14 16 18 C -0.13 -1.80 6.87 36.49 0.25 -1.55 16 19 N 0.04 0.74 4.45 -46.19 -0.21 0.53 16 20 O -0.19 -4.01 18.44 18.88 0.35 -3.66 16 21 O -0.13 -2.35 17.23 25.61 0.44 -1.90 16 22 C 0.07 1.13 9.05 22.24 0.20 1.33 16 23 C -0.11 -2.06 6.87 36.49 0.25 -1.81 16 24 N 0.04 0.99 4.45 -46.19 -0.21 0.78 16 25 O -0.16 -4.17 18.44 18.88 0.35 -3.82 16 26 O -0.17 -5.12 17.23 25.61 0.44 -4.68 16 27 C 0.00 0.03 7.52 83.58 0.63 0.66 16 28 H 0.27 14.77 8.31 -92.71 -0.77 13.99 16 29 H 0.01 0.34 8.08 -2.39 -0.02 0.32 16 30 H -0.02 -1.04 7.30 -2.39 -0.02 -1.05 16 31 H 0.06 2.02 7.42 -2.39 -0.02 2.00 16 32 H 0.11 2.74 8.14 -2.39 -0.02 2.73 16 33 H 0.17 1.92 6.00 -2.39 -0.01 1.91 16 34 H 0.21 1.10 5.93 -2.91 -0.02 1.08 16 35 H 0.44 -1.30 9.06 -74.06 -0.67 -1.97 16 36 H 0.20 2.67 7.15 -2.91 -0.02 2.65 16 37 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.06 2.11 7.91 -2.39 -0.02 2.09 16 Total: -1.00 -72.68 345.27 0.36 -72.32 By element: Atomic # 1 Polarization: -3.36 SS G_CDS: 0.49 Total: -2.87 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 3.68 Total: -12.76 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -6.02 Total: -76.67 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: 0.18 Total: -24.77 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -72.68 0.36 -72.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231224075.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.976 kcal (2) G-P(sol) polarization free energy of solvation -72.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds