Wall clock time and date at job start Tue Mar 31 2020 22:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00003 * 2 1 4 4 H 1.48498 * 109.46948 * 270.00293 * 3 2 1 5 5 H 1.48503 * 109.46934 * 30.00104 * 3 2 1 6 6 H 1.48497 * 109.47037 * 150.00078 * 3 2 1 7 7 C 1.37872 * 120.00038 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.84997 * 359.97438 * 7 2 1 9 9 C 1.53236 * 108.53690 * 128.63179 * 8 7 2 10 10 C 1.52955 * 109.40158 * 54.62535 * 9 8 7 11 11 H 1.09002 * 109.41492 * 56.51212 * 10 9 8 12 12 N 1.46499 * 109.41082 * 176.29400 * 10 9 8 13 13 S 1.65603 * 120.00371 * 214.99881 * 12 10 9 14 14 O 1.42095 * 106.40438 * 178.54374 * 13 12 10 15 15 O 1.42094 * 106.40260 * 311.46871 * 13 12 10 16 16 C 1.76204 * 107.21321 * 65.00477 * 13 12 10 17 17 C 1.38392 * 119.92760 * 90.00084 * 16 13 12 18 18 C 1.38341 * 120.30220 * 179.97438 * 17 16 13 19 19 C 1.37959 * 120.15389 * 0.02562 * 18 17 16 20 20 C 1.39610 * 119.84914 * 0.02562 * 19 18 17 21 21 C 1.47723 * 120.15223 * 180.02562 * 20 19 18 22 22 O 1.21470 * 120.00152 * 179.97438 * 21 20 19 23 23 O 1.34707 * 119.99910 * 0.02562 * 21 20 19 24 24 C 1.37923 * 119.92582 * 269.72739 * 16 13 12 25 25 C 1.52958 * 109.82348 * 296.40231 * 10 9 8 26 26 C 1.51275 * 120.85100 * 179.97438 * 7 2 1 27 27 H 0.97005 * 120.00185 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.62523 * 8.91967 * 8 7 2 29 29 H 1.09001 * 109.62692 * 248.34713 * 8 7 2 30 30 H 1.08988 * 109.48104 * 174.60893 * 9 8 7 31 31 H 1.09004 * 109.47964 * 294.65371 * 9 8 7 32 32 H 0.97003 * 120.00309 * 35.00567 * 12 10 9 33 33 H 1.08001 * 119.84259 * 359.97438 * 17 16 13 34 34 H 1.08002 * 119.91878 * 180.02562 * 18 17 16 35 35 H 1.08006 * 120.07751 * 179.97438 * 19 18 17 36 36 H 0.96704 * 117.00071 * 179.97438 * 23 21 20 37 37 H 1.08004 * 120.07067 * 0.02562 * 24 16 13 38 38 H 1.09002 * 109.48188 * 303.62618 * 25 10 9 39 39 H 1.08993 * 109.49457 * 183.58630 * 25 10 9 40 40 H 1.09003 * 109.62312 * 351.08228 * 26 7 2 41 41 H 1.08999 * 109.62412 * 111.65206 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 6 1.2677 -2.5151 -0.0005 9 6 1.8221 -3.3821 -1.1359 10 6 3.3392 -3.5065 -0.9858 11 1 3.5739 -3.9122 -0.0017 12 7 3.8584 -4.4067 -2.0185 13 16 5.1381 -5.4025 -1.6818 14 8 5.3759 -6.1622 -2.8589 15 8 6.1287 -4.5893 -1.0682 16 6 4.6006 -6.5447 -0.4525 17 6 4.0287 -7.7470 -0.8301 18 6 3.6045 -8.6497 0.1286 19 6 3.7487 -8.3562 1.4689 20 6 4.3238 -7.1447 1.8569 21 6 4.4819 -6.8237 3.2901 22 8 4.9831 -5.7690 3.6247 23 8 4.0713 -7.7012 4.2261 24 6 4.7559 -6.2410 0.8839 25 6 3.9899 -2.1305 -1.1369 26 6 3.5171 -1.2165 -0.0011 27 1 -0.4851 0.8401 0.0004 28 1 0.2035 -2.3408 -0.1593 29 1 1.4206 -3.0196 0.9535 30 1 1.3699 -4.3727 -1.0908 31 1 1.5884 -2.9187 -2.0945 32 1 3.4527 -4.4194 -2.8995 33 1 3.9131 -7.9816 -1.8779 34 1 3.1594 -9.5864 -0.1730 35 1 3.4167 -9.0617 2.2163 36 1 4.1960 -7.4472 5.1508 37 1 5.2060 -5.3040 1.1771 38 1 3.7048 -1.6968 -2.0954 39 1 5.0740 -2.2340 -1.0927 40 1 3.8981 -0.2077 -0.1602 41 1 3.8778 -1.6009 0.9529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260191896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:12 Heat of formation + Delta-G solvation = -151.308216 kcal Electronic energy + Delta-G solvation = -27800.799186 eV Core-core repulsion = 23771.955209 eV Total energy + Delta-G solvation = -4028.843977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.66451 -38.95916 -37.65726 -37.02999 -36.32564 -35.78213 -33.74419 -31.97275 -31.58121 -31.28940 -29.66756 -26.90777 -25.15918 -23.61908 -22.15469 -21.73445 -21.50834 -19.81848 -19.42039 -18.52263 -17.98898 -17.41161 -16.44028 -16.28919 -16.06155 -15.89376 -15.86323 -15.30753 -14.47993 -14.44629 -14.33199 -13.66411 -13.36435 -13.25536 -12.92933 -12.70017 -12.51463 -12.40343 -12.20105 -12.13580 -12.00979 -11.84288 -11.81504 -11.44744 -11.21085 -11.02776 -10.88758 -10.81893 -10.64118 -10.21772 -10.01122 -9.83555 -9.76499 -9.48869 -9.23573 -8.96814 -8.49803 -8.47578 -6.12221 -4.02780 0.16688 0.44971 0.67453 2.16210 2.67629 3.03606 3.27585 3.30749 3.36865 3.39942 3.78637 4.24103 4.38455 4.47314 4.55205 4.59577 4.82541 5.06343 5.15468 5.27029 5.30753 5.41684 5.66044 5.75793 5.78545 5.80263 5.92710 6.02651 6.20001 6.31313 6.48060 6.57024 6.70512 6.85843 6.94706 7.02144 7.11463 7.28306 7.43027 7.61833 7.63125 7.69141 7.79036 8.35316 8.94234 9.53158 10.97219 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011613 B = 0.004163 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.529663 B = 6724.759780 C = 7923.222308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.077 3.923 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.490 4.490 8 C 0.011 3.989 9 C -0.112 4.112 10 C 0.162 3.838 11 H 0.071 0.929 12 N -1.108 6.108 13 S 2.691 3.309 14 O -0.967 6.967 15 O -0.948 6.948 16 C -0.686 4.686 17 C 0.016 3.984 18 C -0.154 4.154 19 C -0.011 4.011 20 C -0.147 4.147 21 C 0.526 3.474 22 O -0.499 6.499 23 O -0.514 6.514 24 C 0.046 3.954 25 C -0.125 4.125 26 C -0.016 4.016 27 H 0.264 0.736 28 H 0.061 0.939 29 H 0.005 0.995 30 H 0.036 0.964 31 H 0.059 0.941 32 H 0.416 0.584 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.417 0.583 37 H 0.158 0.842 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.034 0.966 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.725 -18.306 1.184 19.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.509 4.509 8 C -0.027 4.027 9 C -0.151 4.151 10 C 0.057 3.943 11 H 0.089 0.911 12 N -0.869 5.869 13 S 2.778 3.222 14 O -0.957 6.957 15 O -0.938 6.938 16 C -0.770 4.770 17 C -0.003 4.003 18 C -0.172 4.172 19 C -0.029 4.029 20 C -0.149 4.149 21 C 0.369 3.631 22 O -0.387 6.387 23 O -0.326 6.326 24 C 0.027 3.973 25 C -0.164 4.164 26 C -0.055 4.055 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.023 0.977 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.251 0.749 33 H 0.166 0.834 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.276 0.724 37 H 0.176 0.824 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 6.557 -17.997 0.695 19.167 hybrid contribution -0.286 0.696 0.759 1.069 sum 6.271 -17.301 1.455 18.460 Atomic orbital electron populations 1.69830 1.06176 1.26982 1.49782 1.24833 0.94704 0.98619 0.94439 0.86665 0.80065 0.83203 0.78499 1.20376 1.21694 1.19044 1.20047 0.89408 0.91437 1.49990 1.19373 0.98855 0.92891 0.91588 1.21953 0.91999 0.98644 1.02547 1.20902 0.96153 0.89553 0.87654 0.91124 1.55708 1.54590 1.53804 1.22809 1.02062 0.73663 0.73182 0.73250 1.93565 1.84338 1.71940 1.45878 1.93620 1.55603 1.66655 1.77926 1.31246 1.18132 1.14958 1.12701 1.21240 0.87799 0.90247 1.01049 1.21311 1.02513 1.00892 0.92524 1.21773 0.90067 0.94109 0.96998 1.19115 1.08192 0.97902 0.89668 1.20710 0.74524 0.81097 0.86721 1.90965 1.40613 1.24621 1.82543 1.84504 1.77890 1.49258 1.20985 1.21128 0.88159 0.97906 0.90092 1.22099 0.98084 0.94878 1.01383 1.19762 0.96530 0.95322 0.93837 0.92591 0.92051 0.97708 0.94546 0.92266 0.74930 0.83447 0.83986 0.83617 0.72384 0.82446 0.92323 0.93144 0.94794 0.96098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.05 12.73 55.43 0.71 -24.34 16 2 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 20.98 27.27 -169.99 -4.64 16.35 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.15 6.46 56.52 0.37 -5.78 16 7 C -0.49 -12.55 5.51 -98.92 -0.55 -13.10 16 8 C 0.01 0.26 5.97 -27.48 -0.16 0.10 16 9 C -0.11 -2.16 5.46 -26.63 -0.15 -2.30 16 10 C 0.16 2.91 2.55 -67.98 -0.17 2.74 16 11 H 0.07 1.26 7.23 -51.93 -0.38 0.88 16 12 N -1.11 -15.99 5.47 -4.93 -0.03 -16.02 16 13 S 2.69 38.82 5.65 -107.50 -0.61 38.21 16 14 O -0.97 -14.79 17.27 -57.17 -0.99 -15.78 16 15 O -0.95 -16.60 16.44 -57.17 -0.94 -17.54 16 16 C -0.69 -8.77 5.81 -39.64 -0.23 -9.00 16 17 C 0.02 0.16 9.52 -39.49 -0.38 -0.21 16 18 C -0.15 -1.29 10.03 -39.65 -0.40 -1.69 16 19 C -0.01 -0.10 9.62 -39.17 -0.38 -0.48 16 20 C -0.15 -1.77 5.87 -104.98 -0.62 -2.39 16 21 C 0.53 6.45 8.27 34.61 0.29 6.74 16 22 O -0.50 -7.89 17.13 -19.24 -0.33 -8.22 16 23 O -0.51 -4.27 12.68 -40.51 -0.51 -4.78 16 24 C 0.05 0.64 8.45 -39.17 -0.33 0.30 16 25 C -0.12 -2.51 5.54 -26.62 -0.15 -2.66 16 26 C -0.02 -0.38 5.60 -27.47 -0.15 -0.53 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.06 1.59 7.07 -51.93 -0.37 1.23 16 29 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.04 0.61 8.14 -51.94 -0.42 0.19 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.42 5.06 8.83 -34.47 -0.30 4.76 16 33 H 0.15 1.23 7.61 -52.49 -0.40 0.83 16 34 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.15 0.96 7.61 -52.48 -0.40 0.56 16 36 H 0.42 1.69 9.11 45.56 0.42 2.11 16 37 H 0.16 2.33 7.20 -52.48 -0.38 1.96 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.05 0.98 7.55 -51.93 -0.39 0.58 16 40 H 0.03 0.78 4.78 -51.93 -0.25 0.53 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 353.04 15.07 5.32 5.32 Total: -1.00 -34.14 353.04 -9.64 -43.78 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -4.16 Total: 3.54 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -3.47 Total: -20.52 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.68 Total: -40.36 kcal Atomic # 8 Polarization: -43.55 SS G_CDS: -2.77 Total: -46.32 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.64 Total: 16.35 kcal Atomic # 16 Polarization: 38.82 SS G_CDS: -0.61 Total: 38.21 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.14 -9.64 -43.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260191896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.530 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds