Wall clock time and date at job start Tue Mar 31 2020 22:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00003 * 2 1 4 4 H 1.48498 * 109.46948 * 270.00293 * 3 2 1 5 5 H 1.48503 * 109.46934 * 30.00104 * 3 2 1 6 6 H 1.48497 * 109.47037 * 150.00078 * 3 2 1 7 7 C 1.37872 * 120.00038 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.84997 * 359.97438 * 7 2 1 9 9 C 1.53236 * 108.53690 * 128.63179 * 8 7 2 10 10 C 1.52955 * 109.40158 * 54.62535 * 9 8 7 11 11 H 1.09002 * 109.41492 * 56.51212 * 10 9 8 12 12 N 1.46499 * 109.41082 * 176.29400 * 10 9 8 13 13 S 1.65603 * 120.00371 * 214.99881 * 12 10 9 14 14 O 1.42095 * 106.40438 * 178.54374 * 13 12 10 15 15 O 1.42094 * 106.40260 * 311.46871 * 13 12 10 16 16 C 1.76204 * 107.21321 * 65.00477 * 13 12 10 17 17 C 1.38392 * 119.92760 * 90.00084 * 16 13 12 18 18 C 1.38341 * 120.30220 * 179.97438 * 17 16 13 19 19 C 1.37959 * 120.15389 * 0.02562 * 18 17 16 20 20 C 1.39610 * 119.84914 * 0.02562 * 19 18 17 21 21 C 1.47723 * 120.15223 * 180.02562 * 20 19 18 22 22 O 1.21470 * 120.00152 * 179.97438 * 21 20 19 23 23 O 1.34707 * 119.99910 * 0.02562 * 21 20 19 24 24 C 1.37923 * 119.92582 * 269.72739 * 16 13 12 25 25 C 1.52958 * 109.82348 * 296.40231 * 10 9 8 26 26 C 1.51275 * 120.85100 * 179.97438 * 7 2 1 27 27 H 0.97005 * 120.00185 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.62523 * 8.91967 * 8 7 2 29 29 H 1.09001 * 109.62692 * 248.34713 * 8 7 2 30 30 H 1.08988 * 109.48104 * 174.60893 * 9 8 7 31 31 H 1.09004 * 109.47964 * 294.65371 * 9 8 7 32 32 H 0.97003 * 120.00309 * 35.00567 * 12 10 9 33 33 H 1.08001 * 119.84259 * 359.97438 * 17 16 13 34 34 H 1.08002 * 119.91878 * 180.02562 * 18 17 16 35 35 H 1.08006 * 120.07751 * 179.97438 * 19 18 17 36 36 H 0.96704 * 117.00071 * 179.97438 * 23 21 20 37 37 H 1.08004 * 120.07067 * 0.02562 * 24 16 13 38 38 H 1.09002 * 109.48188 * 303.62618 * 25 10 9 39 39 H 1.08993 * 109.49457 * 183.58630 * 25 10 9 40 40 H 1.09003 * 109.62312 * 351.08228 * 26 7 2 41 41 H 1.08999 * 109.62412 * 111.65206 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 6 1.2677 -2.5151 -0.0005 9 6 1.8221 -3.3821 -1.1359 10 6 3.3392 -3.5065 -0.9858 11 1 3.5739 -3.9122 -0.0017 12 7 3.8584 -4.4067 -2.0185 13 16 5.1381 -5.4025 -1.6818 14 8 5.3759 -6.1622 -2.8589 15 8 6.1287 -4.5893 -1.0682 16 6 4.6006 -6.5447 -0.4525 17 6 4.0287 -7.7470 -0.8301 18 6 3.6045 -8.6497 0.1286 19 6 3.7487 -8.3562 1.4689 20 6 4.3238 -7.1447 1.8569 21 6 4.4819 -6.8237 3.2901 22 8 4.9831 -5.7690 3.6247 23 8 4.0713 -7.7012 4.2261 24 6 4.7559 -6.2410 0.8839 25 6 3.9899 -2.1305 -1.1369 26 6 3.5171 -1.2165 -0.0011 27 1 -0.4851 0.8401 0.0004 28 1 0.2035 -2.3408 -0.1593 29 1 1.4206 -3.0196 0.9535 30 1 1.3699 -4.3727 -1.0908 31 1 1.5884 -2.9187 -2.0945 32 1 3.4527 -4.4194 -2.8995 33 1 3.9131 -7.9816 -1.8779 34 1 3.1594 -9.5864 -0.1730 35 1 3.4167 -9.0617 2.2163 36 1 4.1960 -7.4472 5.1508 37 1 5.2060 -5.3040 1.1771 38 1 3.7048 -1.6968 -2.0954 39 1 5.0740 -2.2340 -1.0927 40 1 3.8981 -0.2077 -0.1602 41 1 3.8778 -1.6009 0.9529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260191896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:11 Heat of formation + Delta-G solvation = -176.962332 kcal Electronic energy + Delta-G solvation = -27801.911632 eV Core-core repulsion = 23771.955209 eV Total energy + Delta-G solvation = -4029.956423 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.54751 -39.79676 -39.20324 -38.30849 -37.18818 -37.01877 -35.43949 -33.07436 -32.81246 -32.39541 -31.42111 -28.64933 -26.01729 -24.48252 -23.93356 -23.28067 -22.55638 -21.31627 -20.64295 -19.55211 -18.87830 -18.72469 -17.86128 -17.32728 -17.16813 -17.06583 -16.78305 -16.41398 -16.37741 -15.64020 -15.15684 -14.98814 -14.63974 -14.52016 -14.27499 -14.14897 -14.04569 -13.99587 -13.42750 -13.31668 -13.23065 -13.11215 -12.85738 -12.82881 -12.69063 -12.68186 -12.42781 -12.01876 -11.88882 -11.81172 -11.79435 -11.52138 -10.92544 -10.76889 -10.64861 -10.52384 -10.30495 -10.15014 -8.16100 -6.09030 -0.75288 -0.56861 -0.22887 1.30198 1.38275 1.42860 1.50869 1.88202 1.93497 2.39338 2.42195 2.69258 3.12261 3.25138 3.64354 3.75334 3.86707 3.89118 4.01582 4.17097 4.21979 4.42727 4.47779 4.51171 4.64915 4.77754 4.85867 4.97300 4.99605 5.01258 5.07810 5.10158 5.26249 5.29735 5.45872 5.47102 5.57963 5.60218 5.66874 5.79551 5.84961 6.15602 6.37209 6.85503 6.96936 7.48996 8.94342 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011613 B = 0.004163 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.529663 B = 6724.759780 C = 7923.222308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.260 1.260 7 C -0.498 4.498 8 C 0.007 3.993 9 C -0.101 4.101 10 C 0.173 3.827 11 H 0.071 0.929 12 N -1.101 6.101 13 S 2.707 3.293 14 O -0.973 6.973 15 O -0.985 6.985 16 C -0.693 4.693 17 C 0.013 3.987 18 C -0.139 4.139 19 C 0.002 3.998 20 C -0.165 4.165 21 C 0.531 3.469 22 O -0.548 6.548 23 O -0.496 6.496 24 C 0.021 3.979 25 C -0.125 4.125 26 C -0.021 4.021 27 H 0.263 0.737 28 H 0.033 0.967 29 H -0.001 1.001 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.428 0.572 33 H 0.170 0.830 34 H 0.187 0.813 35 H 0.178 0.822 36 H 0.436 0.564 37 H 0.132 0.868 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.032 0.968 41 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.797 -21.373 0.601 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.172 4.172 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.184 1.184 7 C -0.518 4.518 8 C -0.032 4.032 9 C -0.140 4.140 10 C 0.066 3.934 11 H 0.089 0.911 12 N -0.861 5.861 13 S 2.798 3.202 14 O -0.964 6.964 15 O -0.975 6.975 16 C -0.781 4.781 17 C -0.007 4.007 18 C -0.157 4.157 19 C -0.016 4.016 20 C -0.167 4.167 21 C 0.376 3.624 22 O -0.440 6.440 23 O -0.310 6.310 24 C 0.002 3.998 25 C -0.164 4.164 26 C -0.059 4.059 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.017 0.983 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.265 0.735 33 H 0.188 0.812 34 H 0.204 0.796 35 H 0.196 0.804 36 H 0.298 0.702 37 H 0.150 0.850 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 6.643 -21.067 0.087 22.089 hybrid contribution -0.328 1.456 1.032 1.814 sum 6.315 -19.611 1.119 20.633 Atomic orbital electron populations 1.69945 1.07406 1.27376 1.52033 1.25506 0.95299 1.01437 0.94951 0.85907 0.79174 0.80146 0.78706 1.19720 1.21907 1.18424 1.20625 0.90845 0.92133 1.48150 1.19337 0.97334 0.93323 0.93161 1.21743 0.92844 0.99144 1.00290 1.20543 0.95053 0.89081 0.88697 0.91130 1.55396 1.54363 1.53587 1.22800 1.01284 0.72960 0.72915 0.73047 1.93551 1.84404 1.71818 1.46586 1.93574 1.57297 1.68115 1.78544 1.30806 1.20124 1.15791 1.11342 1.21656 0.86820 0.89327 1.02854 1.21823 1.00649 1.01725 0.91536 1.22186 0.88073 0.92952 0.98370 1.19247 1.09218 0.99046 0.89197 1.20859 0.73457 0.80613 0.87486 1.90947 1.43030 1.26726 1.83302 1.84452 1.76785 1.47799 1.22010 1.21014 0.89712 0.97927 0.91180 1.22045 0.98632 0.95650 1.00100 1.19789 0.95075 0.96109 0.94940 0.92825 0.94839 0.98251 0.91657 0.92473 0.73518 0.81249 0.79574 0.80439 0.70151 0.84993 0.92054 0.92491 0.94980 0.96516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.61 12.73 21.45 0.27 -53.34 16 2 C 0.03 1.45 5.46 84.65 0.46 1.91 16 3 Si 0.93 43.57 27.27 68.60 1.87 45.44 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 6 H -0.26 -11.73 6.46 99.48 0.64 -11.08 16 7 C -0.50 -25.90 5.51 -16.17 -0.09 -25.99 16 8 C 0.01 0.32 5.97 30.11 0.18 0.50 16 9 C -0.10 -3.79 5.46 30.66 0.17 -3.62 16 10 C 0.17 6.06 2.55 44.96 0.11 6.17 16 11 H 0.07 2.51 7.23 -2.39 -0.02 2.49 16 12 N -1.10 -30.15 5.47 -169.51 -0.93 -31.08 16 13 S 2.71 75.46 5.65 -56.49 -0.32 75.14 16 14 O -0.97 -27.98 17.27 -128.00 -2.21 -30.19 16 15 O -0.99 -34.82 16.44 -128.00 -2.10 -36.93 16 16 C -0.69 -16.68 5.81 22.23 0.13 -16.55 16 17 C 0.01 0.21 9.52 22.33 0.21 0.42 16 18 C -0.14 -1.65 10.03 22.23 0.22 -1.43 16 19 C 0.00 0.03 9.62 22.53 0.22 0.25 16 20 C -0.17 -3.74 5.87 -20.10 -0.12 -3.86 16 21 C 0.53 12.64 8.27 70.33 0.58 13.22 16 22 O -0.55 -17.86 17.13 19.94 0.34 -17.52 16 23 O -0.50 -7.11 12.68 -56.17 -0.71 -7.83 16 24 C 0.02 0.58 8.45 22.54 0.19 0.77 16 25 C -0.12 -4.97 5.54 30.67 0.17 -4.80 16 26 C -0.02 -0.97 5.60 30.12 0.17 -0.80 16 27 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 28 H 0.03 1.77 7.07 -2.39 -0.02 1.76 16 29 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.43 9.53 8.83 -96.74 -0.85 8.68 16 33 H 0.17 2.09 7.61 -2.91 -0.02 2.07 16 34 H 0.19 0.62 8.06 -2.91 -0.02 0.60 16 35 H 0.18 1.39 7.61 -2.91 -0.02 1.36 16 36 H 0.44 2.65 9.11 -74.05 -0.67 1.97 16 37 H 0.13 4.18 7.20 -2.91 -0.02 4.16 16 38 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.06 2.19 7.55 -2.39 -0.02 2.17 16 40 H 0.03 1.47 4.78 -2.39 -0.01 1.46 16 41 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -76.31 353.04 -1.67 -77.98 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -0.49 Total: 12.13 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 2.61 Total: -33.80 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -0.65 Total: -84.42 kcal Atomic # 8 Polarization: -87.78 SS G_CDS: -4.69 Total: -92.47 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.87 Total: 45.44 kcal Atomic # 16 Polarization: 75.46 SS G_CDS: -0.32 Total: 75.14 kcal Total: -76.31 -1.67 -77.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260191896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.985 kcal (2) G-P(sol) polarization free energy of solvation -76.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds