Wall clock time and date at job start Tue Mar 31 2020 22:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99818 * 2 1 4 4 H 1.48497 * 109.46838 * 269.99609 * 3 2 1 5 5 H 1.48493 * 109.47191 * 29.99929 * 3 2 1 6 6 H 1.48498 * 109.46866 * 149.99733 * 3 2 1 7 7 C 1.37871 * 120.00071 * 179.97438 * 2 1 3 8 8 C 1.51271 * 120.84858 * 180.02562 * 7 2 1 9 9 C 1.53231 * 108.53796 * 231.32494 * 8 7 2 10 10 C 1.52954 * 109.40839 * 305.38033 * 9 8 7 11 11 H 1.09008 * 109.35067 * 303.52174 * 10 9 8 12 12 N 1.46505 * 109.41824 * 183.70416 * 10 9 8 13 13 S 1.65591 * 120.00150 * 94.63842 * 12 10 9 14 14 O 1.42102 * 106.40700 * 311.46452 * 13 12 10 15 15 O 1.42104 * 106.39961 * 178.54431 * 13 12 10 16 16 C 1.76200 * 107.21755 * 65.00611 * 13 12 10 17 17 C 1.38389 * 119.92388 * 269.97489 * 16 13 12 18 18 C 1.38351 * 120.30337 * 180.02562 * 17 16 13 19 19 C 1.37959 * 120.15035 * 359.78080 * 18 17 16 20 20 C 1.39618 * 119.84482 * 0.47739 * 19 18 17 21 21 C 1.47725 * 120.14632 * 179.78862 * 20 19 18 22 22 O 1.21471 * 119.99850 * 179.44460 * 21 20 19 23 23 O 1.34715 * 120.00295 * 359.71515 * 21 20 19 24 24 C 1.37924 * 119.92754 * 90.00076 * 16 13 12 25 25 C 1.52953 * 109.82129 * 63.59108 * 10 9 8 26 26 C 1.51263 * 120.85266 * 0.02562 * 7 2 1 27 27 H 0.97005 * 119.99809 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.62871 * 351.04337 * 8 7 2 29 29 H 1.09000 * 109.62234 * 111.61807 * 8 7 2 30 30 H 1.09002 * 109.48373 * 185.39028 * 9 8 7 31 31 H 1.09012 * 109.48018 * 65.35454 * 9 8 7 32 32 H 0.97001 * 119.99107 * 274.64944 * 12 10 9 33 33 H 1.08004 * 119.85156 * 0.02562 * 17 16 13 34 34 H 1.07999 * 119.92076 * 180.02562 * 18 17 16 35 35 H 1.08000 * 120.07824 * 180.23704 * 19 18 17 36 36 H 0.96695 * 117.00057 * 179.72604 * 23 21 20 37 37 H 1.08000 * 120.07460 * 359.94985 * 24 16 13 38 38 H 1.09004 * 109.48095 * 56.38512 * 25 10 9 39 39 H 1.09001 * 109.48608 * 176.42611 * 25 10 9 40 40 H 1.09007 * 109.62642 * 8.95469 * 26 7 2 41 41 H 1.09004 * 109.63030 * 248.38816 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 6 3.5170 -1.2164 0.0011 9 6 3.9912 -2.1316 -1.1327 10 6 3.3403 -3.5074 -0.9812 11 1 3.5740 -3.9110 0.0041 12 7 3.8607 -4.4087 -2.0124 13 16 5.1399 -5.4040 -1.6733 14 8 6.1300 -4.5903 -1.0594 15 8 5.3790 -6.1649 -2.8494 16 6 4.6012 -6.5451 -0.4435 17 6 4.7508 -6.2368 0.8973 18 6 4.3311 -7.1271 1.8695 19 6 3.7557 -8.3277 1.5076 20 6 3.6066 -8.6475 0.1567 21 6 2.9957 -9.9332 -0.2382 22 8 2.8581 -10.2043 -1.4143 23 8 2.5862 -10.8026 0.7058 24 6 4.0317 -7.7438 -0.8192 25 6 1.8234 -3.3832 -1.1329 26 6 1.2678 -2.5151 0.0005 27 1 -0.4850 0.8401 -0.0004 28 1 3.8982 -0.2078 -0.1588 29 1 3.8771 -1.5998 0.9558 30 1 5.0753 -2.2351 -1.0871 31 1 3.7072 -1.6988 -2.0921 32 1 3.4559 -4.4221 -2.8938 33 1 5.1974 -5.2967 1.1862 34 1 4.4505 -6.8800 2.9140 35 1 3.4250 -9.0202 2.2675 36 1 2.1889 -11.6290 0.3989 37 1 3.9151 -7.9830 -1.8659 38 1 1.5907 -2.9208 -2.0922 39 1 1.3711 -4.3739 -1.0874 40 1 0.2037 -2.3409 -0.1597 41 1 1.4193 -3.0189 0.9552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260191897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:15 Heat of formation + Delta-G solvation = -152.191402 kcal Electronic energy + Delta-G solvation = -27517.877811 eV Core-core repulsion = 23488.995536 eV Total energy + Delta-G solvation = -4028.882275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.75193 -38.99850 -37.67976 -37.03380 -36.44368 -35.78472 -33.76845 -31.99137 -31.58885 -31.31809 -29.70302 -26.93556 -25.20549 -23.64223 -22.17187 -21.75567 -21.54122 -19.88689 -19.43286 -18.54793 -18.10168 -17.41726 -16.42981 -16.30725 -16.16033 -15.97660 -15.87215 -15.28317 -14.59416 -14.46403 -14.28569 -13.74640 -13.38361 -13.27651 -12.96637 -12.69482 -12.53801 -12.43162 -12.22875 -12.11291 -12.02610 -11.93752 -11.87154 -11.47515 -11.22669 -11.08514 -10.92944 -10.87799 -10.67014 -10.25460 -10.04549 -9.85142 -9.79054 -9.49956 -9.26170 -9.00105 -8.53033 -8.50937 -6.15558 -4.06658 0.15418 0.43458 0.66057 2.09216 2.58527 3.01842 3.24700 3.29178 3.34145 3.35830 3.78549 4.25399 4.34799 4.43277 4.55181 4.59236 4.80653 5.06904 5.12241 5.24635 5.27558 5.41811 5.64749 5.72469 5.75272 5.83354 5.91024 5.99507 6.08199 6.31324 6.44858 6.54521 6.67873 6.81954 6.91955 6.98967 7.07787 7.25983 7.37596 7.50278 7.60079 7.65303 7.76060 8.31522 8.90911 9.49485 10.93808 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015987 B = 0.003380 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.020099 B = 8281.854932 C = 8987.662187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.077 3.923 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.491 4.491 8 C -0.015 4.015 9 C -0.125 4.125 10 C 0.163 3.837 11 H 0.071 0.929 12 N -1.109 6.109 13 S 2.691 3.309 14 O -0.949 6.949 15 O -0.965 6.965 16 C -0.686 4.686 17 C 0.019 3.981 18 C -0.150 4.150 19 C -0.010 4.010 20 C -0.153 4.153 21 C 0.530 3.470 22 O -0.508 6.508 23 O -0.512 6.512 24 C 0.046 3.954 25 C -0.113 4.113 26 C 0.012 3.988 27 H 0.265 0.735 28 H 0.033 0.967 29 H 0.019 0.981 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.417 0.583 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.416 0.584 37 H 0.154 0.846 38 H 0.058 0.942 39 H 0.036 0.964 40 H 0.061 0.939 41 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.378 -16.871 2.830 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.510 4.510 8 C -0.053 4.053 9 C -0.165 4.165 10 C 0.058 3.942 11 H 0.089 0.911 12 N -0.870 5.870 13 S 2.778 3.222 14 O -0.939 6.939 15 O -0.955 6.955 16 C -0.771 4.771 17 C 0.000 4.000 18 C -0.168 4.168 19 C -0.029 4.029 20 C -0.155 4.155 21 C 0.374 3.626 22 O -0.397 6.397 23 O -0.324 6.324 24 C 0.027 3.973 25 C -0.153 4.153 26 C -0.027 4.027 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.251 0.749 33 H 0.170 0.830 34 H 0.163 0.837 35 H 0.164 0.836 36 H 0.275 0.725 37 H 0.172 0.828 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 7.258 -16.458 2.466 18.156 hybrid contribution -0.644 -0.030 -0.093 0.652 sum 6.614 -16.488 2.373 17.923 Atomic orbital electron populations 1.69831 1.06193 1.27027 1.49605 1.24842 0.94701 0.98633 0.94421 0.86666 0.80000 0.83223 0.78529 1.20380 1.21693 1.19066 1.20040 0.89392 0.91437 1.50150 1.19742 0.96532 0.95314 0.93714 1.22108 0.98034 0.94923 1.01451 1.20887 0.96132 0.89466 0.87694 0.91102 1.55714 1.54610 1.53775 1.22873 1.02064 0.73649 0.73148 0.73293 1.93608 1.55592 1.66684 1.78046 1.93582 1.84260 1.71762 1.45941 1.31250 1.17935 1.13981 1.13893 1.21384 0.89123 0.98727 0.90797 1.21367 1.00585 0.94192 1.00684 1.21779 0.90392 0.95779 0.94930 1.19088 1.07827 0.93677 0.94905 1.20745 0.74864 0.83864 0.83162 1.90926 1.52771 1.76741 1.19264 1.84529 1.73720 1.32574 1.41607 1.20991 0.86566 0.89319 1.00453 1.21959 0.92042 0.98704 1.02578 1.19364 0.98882 0.92836 0.91569 0.92548 0.94811 0.96233 0.93166 0.92323 0.74855 0.83049 0.83738 0.83609 0.72450 0.82801 0.92276 0.94510 0.92083 0.97689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.60 12.73 55.43 0.71 -23.90 16 2 C 0.08 2.01 5.46 -17.82 -0.10 1.92 16 3 Si 0.89 20.44 27.27 -169.99 -4.64 15.81 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -5.93 6.46 56.52 0.37 -5.57 16 7 C -0.49 -12.18 5.51 -98.93 -0.55 -12.72 16 8 C -0.01 -0.32 5.59 -27.48 -0.15 -0.48 16 9 C -0.13 -2.42 5.54 -26.64 -0.15 -2.57 16 10 C 0.16 2.81 2.55 -67.98 -0.17 2.64 16 11 H 0.07 1.15 7.22 -51.92 -0.37 0.78 16 12 N -1.11 -15.97 5.47 -4.93 -0.03 -16.00 16 13 S 2.69 38.74 5.65 -107.50 -0.61 38.14 16 14 O -0.95 -15.77 16.45 -57.17 -0.94 -16.71 16 15 O -0.97 -15.58 17.27 -57.17 -0.99 -16.57 16 16 C -0.69 -8.74 5.81 -39.64 -0.23 -8.97 16 17 C 0.02 0.21 8.89 -39.48 -0.35 -0.14 16 18 C -0.15 -1.37 10.03 -39.64 -0.40 -1.77 16 19 C -0.01 -0.10 9.62 -39.17 -0.38 -0.47 16 20 C -0.15 -1.71 5.87 -104.98 -0.62 -2.33 16 21 C 0.53 5.75 8.27 34.61 0.29 6.04 16 22 O -0.51 -7.02 17.13 -19.24 -0.33 -7.35 16 23 O -0.51 -3.69 12.68 -40.53 -0.51 -4.20 16 24 C 0.05 0.58 9.07 -39.17 -0.36 0.22 16 25 C -0.11 -2.15 5.46 -26.65 -0.15 -2.29 16 26 C 0.01 0.27 5.97 -27.50 -0.16 0.10 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.03 0.75 4.78 -51.93 -0.25 0.50 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.92 7.55 -51.93 -0.39 0.53 16 31 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 32 H 0.42 5.23 8.83 -34.47 -0.30 4.93 16 33 H 0.15 1.59 7.61 -52.48 -0.40 1.19 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.15 0.95 7.61 -52.49 -0.40 0.55 16 36 H 0.42 1.15 9.11 45.56 0.42 1.56 16 37 H 0.15 1.94 7.20 -52.49 -0.38 1.57 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 1.56 7.07 -51.92 -0.37 1.19 16 41 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 LS Contribution 353.04 15.07 5.32 5.32 Total: -1.00 -33.27 353.04 -9.64 -42.91 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -4.16 Total: 3.39 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -3.47 Total: -20.83 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.68 Total: -39.90 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -2.77 Total: -44.83 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.64 Total: 15.81 kcal Atomic # 16 Polarization: 38.74 SS G_CDS: -0.61 Total: 38.14 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.27 -9.64 -42.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260191897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.284 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds