Wall clock time and date at job start Tue Mar 31 2020 22:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99818 * 2 1 4 4 H 1.48497 * 109.46838 * 269.99609 * 3 2 1 5 5 H 1.48493 * 109.47191 * 29.99929 * 3 2 1 6 6 H 1.48498 * 109.46866 * 149.99733 * 3 2 1 7 7 C 1.37871 * 120.00071 * 179.97438 * 2 1 3 8 8 C 1.51271 * 120.84858 * 180.02562 * 7 2 1 9 9 C 1.53231 * 108.53796 * 231.32494 * 8 7 2 10 10 C 1.52954 * 109.40839 * 305.38033 * 9 8 7 11 11 H 1.09008 * 109.35067 * 303.52174 * 10 9 8 12 12 N 1.46505 * 109.41824 * 183.70416 * 10 9 8 13 13 S 1.65591 * 120.00150 * 94.63842 * 12 10 9 14 14 O 1.42102 * 106.40700 * 311.46452 * 13 12 10 15 15 O 1.42104 * 106.39961 * 178.54431 * 13 12 10 16 16 C 1.76200 * 107.21755 * 65.00611 * 13 12 10 17 17 C 1.38389 * 119.92388 * 269.97489 * 16 13 12 18 18 C 1.38351 * 120.30337 * 180.02562 * 17 16 13 19 19 C 1.37959 * 120.15035 * 359.78080 * 18 17 16 20 20 C 1.39618 * 119.84482 * 0.47739 * 19 18 17 21 21 C 1.47725 * 120.14632 * 179.78862 * 20 19 18 22 22 O 1.21471 * 119.99850 * 179.44460 * 21 20 19 23 23 O 1.34715 * 120.00295 * 359.71515 * 21 20 19 24 24 C 1.37924 * 119.92754 * 90.00076 * 16 13 12 25 25 C 1.52953 * 109.82129 * 63.59108 * 10 9 8 26 26 C 1.51263 * 120.85266 * 0.02562 * 7 2 1 27 27 H 0.97005 * 119.99809 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.62871 * 351.04337 * 8 7 2 29 29 H 1.09000 * 109.62234 * 111.61807 * 8 7 2 30 30 H 1.09002 * 109.48373 * 185.39028 * 9 8 7 31 31 H 1.09012 * 109.48018 * 65.35454 * 9 8 7 32 32 H 0.97001 * 119.99107 * 274.64944 * 12 10 9 33 33 H 1.08004 * 119.85156 * 0.02562 * 17 16 13 34 34 H 1.07999 * 119.92076 * 180.02562 * 18 17 16 35 35 H 1.08000 * 120.07824 * 180.23704 * 19 18 17 36 36 H 0.96695 * 117.00057 * 179.72604 * 23 21 20 37 37 H 1.08000 * 120.07460 * 359.94985 * 24 16 13 38 38 H 1.09004 * 109.48095 * 56.38512 * 25 10 9 39 39 H 1.09001 * 109.48608 * 176.42611 * 25 10 9 40 40 H 1.09007 * 109.62642 * 8.95469 * 26 7 2 41 41 H 1.09004 * 109.63030 * 248.38816 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 6 3.5170 -1.2164 0.0011 9 6 3.9912 -2.1316 -1.1327 10 6 3.3403 -3.5074 -0.9812 11 1 3.5740 -3.9110 0.0041 12 7 3.8607 -4.4087 -2.0124 13 16 5.1399 -5.4040 -1.6733 14 8 6.1300 -4.5903 -1.0594 15 8 5.3790 -6.1649 -2.8494 16 6 4.6012 -6.5451 -0.4435 17 6 4.7508 -6.2368 0.8973 18 6 4.3311 -7.1271 1.8695 19 6 3.7557 -8.3277 1.5076 20 6 3.6066 -8.6475 0.1567 21 6 2.9957 -9.9332 -0.2382 22 8 2.8581 -10.2043 -1.4143 23 8 2.5862 -10.8026 0.7058 24 6 4.0317 -7.7438 -0.8192 25 6 1.8234 -3.3832 -1.1329 26 6 1.2678 -2.5151 0.0005 27 1 -0.4850 0.8401 -0.0004 28 1 3.8982 -0.2078 -0.1588 29 1 3.8771 -1.5998 0.9558 30 1 5.0753 -2.2351 -1.0871 31 1 3.7072 -1.6988 -2.0921 32 1 3.4559 -4.4221 -2.8938 33 1 5.1974 -5.2967 1.1862 34 1 4.4505 -6.8800 2.9140 35 1 3.4250 -9.0202 2.2675 36 1 2.1889 -11.6290 0.3989 37 1 3.9151 -7.9830 -1.8659 38 1 1.5907 -2.9208 -2.0922 39 1 1.3711 -4.3739 -1.0874 40 1 0.2037 -2.3409 -0.1597 41 1 1.4193 -3.0189 0.9552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260191897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:14 Heat of formation + Delta-G solvation = -176.631684 kcal Electronic energy + Delta-G solvation = -27518.937621 eV Core-core repulsion = 23488.995536 eV Total energy + Delta-G solvation = -4029.942085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.54659 -39.80332 -39.17267 -38.30246 -37.18484 -37.01212 -35.40778 -33.04424 -32.81992 -32.39420 -31.38596 -28.61192 -26.01488 -24.49707 -23.88750 -23.23608 -22.51558 -21.31269 -20.63749 -19.52903 -18.90185 -18.70063 -17.83460 -17.26982 -17.19891 -17.09978 -16.77449 -16.34824 -16.34219 -15.69284 -15.12918 -14.97400 -14.58669 -14.51862 -14.25133 -14.12572 -14.03114 -13.96210 -13.45750 -13.29291 -13.21242 -13.07929 -12.86965 -12.80768 -12.68050 -12.65554 -12.39776 -12.02398 -11.84266 -11.80155 -11.77307 -11.47342 -10.89766 -10.73585 -10.64478 -10.49275 -10.31257 -10.11573 -8.12730 -6.05529 -0.75118 -0.57675 -0.22334 1.29000 1.41443 1.46207 1.53420 1.86667 1.96030 2.39253 2.45006 2.69381 3.16193 3.25369 3.63419 3.75383 3.85713 3.92643 4.00617 4.18607 4.24956 4.45699 4.50567 4.51863 4.65320 4.81468 4.85114 4.97434 5.01128 5.05545 5.09026 5.14438 5.29361 5.35325 5.46647 5.49071 5.56235 5.66081 5.71829 5.83062 5.88606 6.12796 6.39975 6.86198 7.01664 7.52613 8.97791 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015987 B = 0.003380 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.020099 B = 8281.854932 C = 8987.662187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.252 1.252 7 C -0.495 4.495 8 C -0.019 4.019 9 C -0.125 4.125 10 C 0.172 3.828 11 H 0.086 0.914 12 N -1.105 6.105 13 S 2.707 3.293 14 O -0.972 6.972 15 O -0.986 6.986 16 C -0.692 4.692 17 C 0.005 3.995 18 C -0.141 4.141 19 C 0.003 3.997 20 C -0.165 4.165 21 C 0.536 3.464 22 O -0.547 6.547 23 O -0.497 6.497 24 C 0.029 3.971 25 C -0.104 4.104 26 C 0.007 3.993 27 H 0.261 0.739 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.425 0.575 33 H 0.159 0.841 34 H 0.180 0.820 35 H 0.178 0.822 36 H 0.437 0.563 37 H 0.144 0.856 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.027 0.973 41 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.542 -18.453 4.454 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.175 4.175 3 Si 0.761 3.239 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.176 1.176 7 C -0.515 4.515 8 C -0.058 4.058 9 C -0.165 4.165 10 C 0.066 3.934 11 H 0.104 0.896 12 N -0.865 5.865 13 S 2.798 3.202 14 O -0.962 6.962 15 O -0.977 6.977 16 C -0.780 4.780 17 C -0.014 4.014 18 C -0.160 4.160 19 C -0.015 4.015 20 C -0.167 4.167 21 C 0.381 3.619 22 O -0.439 6.439 23 O -0.311 6.311 24 C 0.010 3.990 25 C -0.144 4.144 26 C -0.031 4.031 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.261 0.739 33 H 0.176 0.824 34 H 0.197 0.803 35 H 0.196 0.804 36 H 0.300 0.700 37 H 0.161 0.839 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 8.444 -18.043 4.071 20.333 hybrid contribution -1.023 0.294 -0.492 1.172 sum 7.422 -17.749 3.579 19.568 Atomic orbital electron populations 1.69962 1.07566 1.27279 1.52305 1.25536 0.95240 1.01546 0.95130 0.85907 0.79425 0.80122 0.78445 1.20362 1.22238 1.17623 1.20660 0.91138 0.91891 1.47767 1.19787 0.94624 0.96051 0.95297 1.22057 0.98860 0.95522 1.00028 1.20625 0.94573 0.89099 0.89133 0.89597 1.55481 1.54454 1.53663 1.22917 1.01294 0.73086 0.72802 0.73008 1.93573 1.56664 1.67636 1.78361 1.93554 1.84570 1.72022 1.47511 1.30800 1.19589 1.13628 1.13966 1.21651 0.89502 0.99747 0.90543 1.21782 0.98922 0.93371 1.01902 1.22166 0.88748 0.96094 0.94480 1.19249 1.08041 0.93731 0.95708 1.20714 0.74182 0.84081 0.82886 1.90917 1.54482 1.77575 1.20892 1.84474 1.73135 1.33230 1.40286 1.20986 0.87552 0.89932 1.00575 1.21763 0.93431 0.98886 1.00275 1.19333 0.97072 0.93333 0.93358 0.92980 0.95109 0.95171 0.91971 0.92852 0.73903 0.82370 0.80281 0.80437 0.70048 0.83869 0.93228 0.92274 0.95387 0.97160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.90 12.73 21.44 0.27 -52.62 16 2 C 0.02 1.25 5.46 84.65 0.46 1.71 16 3 Si 0.93 42.02 27.27 68.60 1.87 43.89 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.30 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.25 -10.65 6.46 99.48 0.64 -10.01 16 7 C -0.50 -24.42 5.51 -16.18 -0.09 -24.51 16 8 C -0.02 -0.82 5.59 30.11 0.17 -0.65 16 9 C -0.13 -4.62 5.54 30.66 0.17 -4.45 16 10 C 0.17 5.61 2.55 44.96 0.11 5.72 16 11 H 0.09 2.57 7.22 -2.38 -0.02 2.56 16 12 N -1.10 -30.32 5.47 -169.50 -0.93 -31.25 16 13 S 2.71 75.18 5.65 -56.49 -0.32 74.86 16 14 O -0.97 -31.00 16.45 -128.00 -2.11 -33.11 16 15 O -0.99 -31.55 17.27 -128.00 -2.21 -33.76 16 16 C -0.69 -16.56 5.81 22.23 0.13 -16.43 16 17 C 0.00 0.09 8.89 22.33 0.20 0.29 16 18 C -0.14 -2.02 10.03 22.23 0.22 -1.80 16 19 C 0.00 0.04 9.62 22.54 0.22 0.26 16 20 C -0.17 -3.34 5.87 -20.10 -0.12 -3.46 16 21 C 0.54 10.64 8.27 70.33 0.58 11.23 16 22 O -0.55 -14.76 17.13 19.93 0.34 -14.42 16 23 O -0.50 -5.61 12.68 -56.24 -0.71 -6.32 16 24 C 0.03 0.70 9.07 22.53 0.20 0.91 16 25 C -0.10 -3.83 5.46 30.65 0.17 -3.66 16 26 C 0.01 0.33 5.97 30.09 0.18 0.51 16 27 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 28 H 0.03 1.31 4.78 -2.39 -0.01 1.30 16 29 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 2.16 7.55 -2.39 -0.02 2.14 16 31 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.42 10.22 8.83 -96.74 -0.85 9.37 16 33 H 0.16 2.88 7.61 -2.91 -0.02 2.86 16 34 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.18 1.39 7.61 -2.91 -0.02 1.36 16 36 H 0.44 1.11 9.11 -74.06 -0.67 0.44 16 37 H 0.14 3.67 7.20 -2.91 -0.02 3.64 16 38 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.03 1.45 7.07 -2.38 -0.02 1.43 16 41 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -72.50 353.04 -1.67 -74.18 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -0.49 Total: 12.88 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 2.61 Total: -34.33 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -0.65 Total: -83.87 kcal Atomic # 8 Polarization: -82.91 SS G_CDS: -4.69 Total: -87.60 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.87 Total: 43.89 kcal Atomic # 16 Polarization: 75.18 SS G_CDS: -0.32 Total: 74.86 kcal Total: -72.50 -1.67 -74.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260191897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.453 kcal (2) G-P(sol) polarization free energy of solvation -72.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds