Wall clock time and date at job start Tue Mar 31 2020 22:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00652 * 2 1 4 4 H 1.48507 * 109.46806 * 5.00063 * 3 2 1 5 5 H 1.48498 * 109.47050 * 124.99732 * 3 2 1 6 6 H 1.48496 * 109.47559 * 245.00358 * 3 2 1 7 7 C 1.37884 * 119.99428 * 179.72986 * 2 1 3 8 8 H 1.08003 * 119.99926 * 184.22009 * 7 2 1 9 9 C 1.50702 * 120.00144 * 4.21874 * 7 2 1 10 10 N 1.46504 * 110.01594 * 55.84807 * 9 7 2 11 11 S 1.65610 * 119.99660 * 54.46947 * 10 9 7 12 12 O 1.42104 * 106.39835 * 179.25354 * 11 10 9 13 13 O 1.42096 * 106.40006 * 312.17568 * 11 10 9 14 14 C 1.76201 * 107.21721 * 65.71774 * 11 10 9 15 15 C 1.38382 * 119.92618 * 84.45986 * 14 11 10 16 16 C 1.38350 * 120.30483 * 179.97438 * 15 14 11 17 17 C 1.37966 * 120.14768 * 0.02562 * 16 15 14 18 18 C 1.39613 * 119.84856 * 0.02562 * 17 16 15 19 19 C 1.47717 * 120.14943 * 179.97438 * 18 17 16 20 20 O 1.21474 * 120.00095 * 185.21062 * 19 18 17 21 21 O 1.34717 * 120.00223 * 5.21154 * 19 18 17 22 22 C 1.37928 * 119.92091 * 264.18534 * 14 11 10 23 23 C 1.54268 * 110.03080 * 294.46271 * 9 7 2 24 24 C 1.54965 * 104.15849 * 217.13663 * 23 9 7 25 25 C 1.54893 * 102.77793 * 37.88542 * 24 23 9 26 26 C 1.53872 * 110.03373 * 177.24286 * 9 7 2 27 27 H 0.96995 * 120.00724 * 174.35795 * 1 2 3 28 28 H 0.96992 * 120.00333 * 234.46158 * 10 9 7 29 29 H 1.07997 * 119.85023 * 359.97438 * 15 14 11 30 30 H 1.07995 * 119.92613 * 180.02562 * 16 15 14 31 31 H 1.08001 * 120.07518 * 179.97438 * 17 16 15 32 32 H 0.96704 * 116.99798 * 179.97438 * 21 19 18 33 33 H 1.07990 * 120.07818 * 359.97438 * 22 14 11 34 34 H 1.09002 * 110.48861 * 335.78207 * 23 9 7 35 35 H 1.09004 * 110.49001 * 98.42549 * 23 9 7 36 36 H 1.09003 * 110.71881 * 279.57496 * 24 23 9 37 37 H 1.08996 * 110.92651 * 156.29693 * 24 23 9 38 38 H 1.08999 * 110.48401 * 203.40505 * 25 24 23 39 39 H 1.08999 * 110.48581 * 80.76494 * 25 24 23 40 40 H 1.09000 * 110.03442 * 238.56995 * 26 9 7 41 41 H 1.09004 * 110.03073 * 0.02562 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 1.2890 2.7437 0.1220 5 1 3.1922 1.6446 1.1469 6 1 3.0092 1.7505 -1.2689 7 6 2.0045 -1.1942 0.0056 8 1 3.0823 -1.1952 0.0745 9 6 1.2539 -2.4979 -0.0842 10 7 0.4085 -2.5083 -1.2806 11 16 1.0743 -2.2115 -2.7676 12 8 0.0141 -2.3092 -3.7087 13 8 1.8797 -1.0499 -2.6219 14 6 2.1765 -3.5402 -3.1202 15 6 1.6911 -4.7110 -3.6757 16 6 2.5496 -5.7590 -3.9562 17 6 3.8969 -5.6432 -3.6829 18 6 4.3933 -4.4653 -3.1214 19 6 5.8346 -4.3343 -2.8255 20 8 6.2495 -3.3477 -2.2510 21 8 6.6889 -5.3090 -3.1927 22 6 3.5221 -3.4089 -2.8471 23 6 0.3877 -2.6969 1.1767 24 6 0.4752 -4.2178 1.4605 25 6 1.9468 -4.5480 1.1076 26 6 2.2446 -3.6745 -0.1285 27 1 -0.4851 -0.8359 -0.0826 28 1 -0.5412 -2.6892 -1.2019 29 1 0.6372 -4.8071 -3.8913 30 1 2.1642 -6.6698 -4.3901 31 1 4.5660 -6.4622 -3.9019 32 1 7.6227 -5.1783 -2.9778 33 1 3.9004 -2.4929 -2.4181 34 1 0.7951 -2.1289 2.0130 35 1 -0.6437 -2.4032 0.9813 36 1 -0.2096 -4.7702 0.8171 37 1 0.2727 -4.4302 2.5102 38 1 2.0523 -5.6048 0.8623 39 1 2.6065 -4.2792 1.9326 40 1 2.0958 -4.2538 -1.0397 41 1 3.2682 -3.3025 -0.0845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260194258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:05 Heat of formation + Delta-G solvation = -135.396455 kcal Electronic energy + Delta-G solvation = -29259.254804 eV Core-core repulsion = 25231.100813 eV Total energy + Delta-G solvation = -4028.153991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.47178 -38.78505 -38.06198 -36.26037 -36.15095 -34.81747 -33.16307 -31.70460 -31.35607 -31.20629 -28.03106 -26.87347 -24.88100 -23.73014 -23.21722 -21.42753 -20.10185 -19.47458 -18.98055 -18.11534 -17.78329 -17.09492 -16.47920 -16.10801 -15.74394 -15.64864 -15.43636 -15.07911 -14.47492 -14.07754 -13.82058 -13.60527 -13.44000 -13.10493 -13.05106 -12.50197 -12.29363 -12.07098 -11.77732 -11.71552 -11.65374 -11.13247 -10.99401 -10.88685 -10.73349 -10.52555 -10.50788 -10.48692 -10.27278 -10.22086 -9.99845 -9.96108 -9.85522 -9.35482 -9.28409 -9.12380 -8.22118 -7.99377 -6.27385 -4.06996 0.49176 0.97763 1.30444 2.39028 2.86579 3.47781 3.55191 3.67539 3.78589 4.03344 4.56597 4.62148 4.68340 4.77418 4.87924 5.05652 5.20368 5.27916 5.44094 5.50277 5.55036 5.59615 5.61993 5.81518 6.06322 6.07734 6.09439 6.15257 6.21416 6.32949 6.34483 6.40061 6.49362 6.53484 6.61444 6.65100 6.80987 6.86248 7.12574 7.30271 7.78251 8.04221 8.17971 8.47522 8.91534 9.65796 11.07375 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011445 B = 0.005637 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.974414 B = 4965.978797 C = 5203.544012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 1.058 2.942 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.584 4.584 8 H 0.060 0.940 9 C 0.281 3.719 10 N -1.090 6.090 11 S 2.680 3.320 12 O -0.995 6.995 13 O -0.918 6.918 14 C -0.676 4.676 15 C 0.008 3.992 16 C -0.159 4.159 17 C -0.022 4.022 18 C -0.154 4.154 19 C 0.526 3.474 20 O -0.501 6.501 21 O -0.516 6.516 22 C 0.056 3.944 23 C -0.102 4.102 24 C -0.129 4.129 25 C -0.116 4.116 26 C -0.142 4.142 27 H 0.275 0.725 28 H 0.395 0.605 29 H 0.141 0.859 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.413 0.587 33 H 0.162 0.838 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.671 -14.179 -4.416 15.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.153 4.153 3 Si 0.886 3.114 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.625 4.625 8 H 0.078 0.922 9 C 0.197 3.803 10 N -0.850 5.850 11 S 2.767 3.233 12 O -0.985 6.985 13 O -0.907 6.907 14 C -0.757 4.757 15 C -0.011 4.011 16 C -0.177 4.177 17 C -0.040 4.040 18 C -0.156 4.156 19 C 0.369 3.631 20 O -0.389 6.389 21 O -0.329 6.329 22 C 0.037 3.963 23 C -0.142 4.142 24 C -0.167 4.167 25 C -0.154 4.154 26 C -0.181 4.181 27 H 0.088 0.912 28 H 0.227 0.773 29 H 0.159 0.841 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.272 0.728 33 H 0.179 0.821 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.243 -11.638 -4.901 13.673 hybrid contribution 0.825 -2.526 0.128 2.660 sum 6.068 -14.164 -4.773 16.131 Atomic orbital electron populations 1.70806 1.07068 1.31809 1.43808 1.25573 0.96102 1.02347 0.91253 0.83730 0.75252 0.75453 0.76946 1.21212 1.21770 1.20331 1.22212 0.94634 0.90471 1.55165 0.92155 1.18652 0.86678 0.93656 0.81347 1.56486 1.17880 1.88574 1.22021 1.02979 0.73500 0.74037 0.72746 1.93487 1.55337 1.87398 1.62260 1.93645 1.69735 1.42249 1.85119 1.31789 1.10840 1.19458 1.13592 1.21207 1.00512 0.90511 0.88904 1.21227 0.93324 0.99777 1.03405 1.21634 0.95823 0.95785 0.90745 1.19110 0.89756 0.97517 1.09239 1.20824 0.87117 0.79844 0.75269 1.90956 1.78784 1.30659 1.38459 1.84531 1.23603 1.47943 1.76780 1.21192 0.90576 0.97627 0.86891 1.22664 0.99572 0.92984 0.98998 1.22592 0.96207 0.98282 0.99591 1.22238 0.96854 0.97931 0.98361 1.22999 1.00946 0.97024 0.97109 0.91198 0.77259 0.84141 0.84567 0.84199 0.72800 0.82060 0.90742 0.92389 0.92647 0.92852 0.93343 0.92089 0.92865 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.02 13.27 55.43 0.74 -24.28 16 2 C 0.06 1.51 4.39 -17.82 -0.08 1.44 16 3 Si 1.06 25.95 29.91 -169.99 -5.08 20.87 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.58 -14.87 5.90 -34.44 -0.20 -15.08 16 8 H 0.06 1.59 7.33 -52.48 -0.38 1.20 16 9 C 0.28 6.00 0.57 -131.85 -0.08 5.93 16 10 N -1.09 -22.40 4.03 0.51 0.00 -22.40 16 11 S 2.68 56.57 5.68 -107.50 -0.61 55.96 16 12 O -0.99 -22.02 17.42 -57.17 -1.00 -23.02 16 13 O -0.92 -22.89 14.06 -57.17 -0.80 -23.70 16 14 C -0.68 -11.67 3.59 -39.64 -0.14 -11.81 16 15 C 0.01 0.11 9.42 -39.49 -0.37 -0.26 16 16 C -0.16 -1.80 10.03 -39.64 -0.40 -2.19 16 17 C -0.02 -0.25 9.62 -39.17 -0.38 -0.63 16 18 C -0.15 -2.25 5.87 -104.98 -0.62 -2.87 16 19 C 0.53 7.42 8.26 34.60 0.29 7.71 16 20 O -0.50 -8.80 17.15 -19.25 -0.33 -9.13 16 21 O -0.52 -5.03 12.69 -40.54 -0.51 -5.55 16 22 C 0.06 0.98 7.21 -39.17 -0.28 0.70 16 23 C -0.10 -2.03 5.03 -25.03 -0.13 -2.16 16 24 C -0.13 -2.10 6.91 -24.70 -0.17 -2.27 16 25 C -0.12 -1.90 6.83 -25.07 -0.17 -2.07 16 26 C -0.14 -2.66 4.66 -25.62 -0.12 -2.78 16 27 H 0.28 7.23 4.54 -40.82 -0.19 7.04 16 28 H 0.39 7.44 8.15 -34.48 -0.28 7.16 16 29 H 0.14 1.76 7.74 -52.49 -0.41 1.36 16 30 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.14 1.23 7.62 -52.49 -0.40 0.83 16 32 H 0.41 2.16 9.11 45.56 0.42 2.58 16 33 H 0.16 3.16 7.09 -52.49 -0.37 2.78 16 34 H 0.07 1.62 7.85 -51.93 -0.41 1.21 16 35 H 0.06 1.18 6.59 -51.93 -0.34 0.84 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.92 4.85 -51.93 -0.25 0.67 16 41 H 0.07 1.36 7.16 -51.93 -0.37 0.99 16 LS Contribution 342.48 15.07 5.16 5.16 Total: -1.00 -33.78 342.48 -9.18 -42.97 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -3.90 Total: 9.47 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: -2.85 Total: -26.36 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.74 Total: -46.68 kcal Atomic # 8 Polarization: -58.74 SS G_CDS: -2.64 Total: -61.39 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.08 Total: 20.87 kcal Atomic # 16 Polarization: 56.57 SS G_CDS: -0.61 Total: 55.96 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.78 -9.18 -42.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260194258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.429 kcal (2) G-P(sol) polarization free energy of solvation -33.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds