Wall clock time and date at job start Tue Mar 31 2020 22:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00652 * 2 1 4 4 H 1.48507 * 109.46806 * 5.00063 * 3 2 1 5 5 H 1.48498 * 109.47050 * 124.99732 * 3 2 1 6 6 H 1.48496 * 109.47559 * 245.00358 * 3 2 1 7 7 C 1.37884 * 119.99428 * 179.72986 * 2 1 3 8 8 H 1.08003 * 119.99926 * 184.22009 * 7 2 1 9 9 C 1.50702 * 120.00144 * 4.21874 * 7 2 1 10 10 N 1.46504 * 110.01594 * 55.84807 * 9 7 2 11 11 S 1.65610 * 119.99660 * 54.46947 * 10 9 7 12 12 O 1.42104 * 106.39835 * 179.25354 * 11 10 9 13 13 O 1.42096 * 106.40006 * 312.17568 * 11 10 9 14 14 C 1.76201 * 107.21721 * 65.71774 * 11 10 9 15 15 C 1.38382 * 119.92618 * 84.45986 * 14 11 10 16 16 C 1.38350 * 120.30483 * 179.97438 * 15 14 11 17 17 C 1.37966 * 120.14768 * 0.02562 * 16 15 14 18 18 C 1.39613 * 119.84856 * 0.02562 * 17 16 15 19 19 C 1.47717 * 120.14943 * 179.97438 * 18 17 16 20 20 O 1.21474 * 120.00095 * 185.21062 * 19 18 17 21 21 O 1.34717 * 120.00223 * 5.21154 * 19 18 17 22 22 C 1.37928 * 119.92091 * 264.18534 * 14 11 10 23 23 C 1.54268 * 110.03080 * 294.46271 * 9 7 2 24 24 C 1.54965 * 104.15849 * 217.13663 * 23 9 7 25 25 C 1.54893 * 102.77793 * 37.88542 * 24 23 9 26 26 C 1.53872 * 110.03373 * 177.24286 * 9 7 2 27 27 H 0.96995 * 120.00724 * 174.35795 * 1 2 3 28 28 H 0.96992 * 120.00333 * 234.46158 * 10 9 7 29 29 H 1.07997 * 119.85023 * 359.97438 * 15 14 11 30 30 H 1.07995 * 119.92613 * 180.02562 * 16 15 14 31 31 H 1.08001 * 120.07518 * 179.97438 * 17 16 15 32 32 H 0.96704 * 116.99798 * 179.97438 * 21 19 18 33 33 H 1.07990 * 120.07818 * 359.97438 * 22 14 11 34 34 H 1.09002 * 110.48861 * 335.78207 * 23 9 7 35 35 H 1.09004 * 110.49001 * 98.42549 * 23 9 7 36 36 H 1.09003 * 110.71881 * 279.57496 * 24 23 9 37 37 H 1.08996 * 110.92651 * 156.29693 * 24 23 9 38 38 H 1.08999 * 110.48401 * 203.40505 * 25 24 23 39 39 H 1.08999 * 110.48581 * 80.76494 * 25 24 23 40 40 H 1.09000 * 110.03442 * 238.56995 * 26 9 7 41 41 H 1.09004 * 110.03073 * 0.02562 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 1.2890 2.7437 0.1220 5 1 3.1922 1.6446 1.1469 6 1 3.0092 1.7505 -1.2689 7 6 2.0045 -1.1942 0.0056 8 1 3.0823 -1.1952 0.0745 9 6 1.2539 -2.4979 -0.0842 10 7 0.4085 -2.5083 -1.2806 11 16 1.0743 -2.2115 -2.7676 12 8 0.0141 -2.3092 -3.7087 13 8 1.8797 -1.0499 -2.6219 14 6 2.1765 -3.5402 -3.1202 15 6 1.6911 -4.7110 -3.6757 16 6 2.5496 -5.7590 -3.9562 17 6 3.8969 -5.6432 -3.6829 18 6 4.3933 -4.4653 -3.1214 19 6 5.8346 -4.3343 -2.8255 20 8 6.2495 -3.3477 -2.2510 21 8 6.6889 -5.3090 -3.1927 22 6 3.5221 -3.4089 -2.8471 23 6 0.3877 -2.6969 1.1767 24 6 0.4752 -4.2178 1.4605 25 6 1.9468 -4.5480 1.1076 26 6 2.2446 -3.6745 -0.1285 27 1 -0.4851 -0.8359 -0.0826 28 1 -0.5412 -2.6892 -1.2019 29 1 0.6372 -4.8071 -3.8913 30 1 2.1642 -6.6698 -4.3901 31 1 4.5660 -6.4622 -3.9019 32 1 7.6227 -5.1783 -2.9778 33 1 3.9004 -2.4929 -2.4181 34 1 0.7951 -2.1289 2.0130 35 1 -0.6437 -2.4032 0.9813 36 1 -0.2096 -4.7702 0.8171 37 1 0.2727 -4.4302 2.5102 38 1 2.0523 -5.6048 0.8623 39 1 2.6065 -4.2792 1.9326 40 1 2.0958 -4.2538 -1.0397 41 1 3.2682 -3.3025 -0.0845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260194258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:03 Heat of formation + Delta-G solvation = -160.783419 kcal Electronic energy + Delta-G solvation = -29260.355666 eV Core-core repulsion = 25231.100813 eV Total energy + Delta-G solvation = -4029.254852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.55350 -39.99683 -39.55424 -38.00351 -37.17136 -36.62942 -34.87998 -33.19914 -32.76214 -32.38274 -29.54725 -28.56907 -25.97758 -25.57788 -24.39913 -22.48708 -21.47456 -21.14702 -20.43308 -19.64101 -18.92802 -18.77522 -18.17990 -17.20451 -17.08912 -16.90299 -16.75275 -16.42940 -15.90700 -15.64099 -15.41988 -15.07597 -14.72989 -14.50084 -14.33767 -14.01080 -13.93071 -13.41743 -13.30105 -13.03682 -12.94999 -12.69258 -12.68025 -12.64494 -12.39865 -12.20931 -11.98355 -11.88036 -11.86054 -11.74325 -11.66125 -11.53709 -11.38360 -11.11774 -10.49757 -10.24970 -10.22075 -9.78526 -8.34155 -6.12895 -0.60461 -0.38529 -0.13150 1.32115 1.50105 1.64178 1.76698 1.89734 2.26541 2.52729 2.63889 2.98138 3.40584 3.52960 3.75942 3.80666 3.90053 3.97476 4.03725 4.07706 4.14638 4.35224 4.52616 4.66765 4.71626 4.75895 4.89574 4.93425 4.95093 4.99951 5.03630 5.08746 5.11500 5.18360 5.26456 5.37216 5.47572 5.58507 5.61781 5.67516 6.23222 6.38477 6.53718 6.87422 6.91171 7.62639 9.03097 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011445 B = 0.005637 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.974414 B = 4965.978797 C = 5203.544012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.019 3.981 3 Si 1.073 2.927 4 H -0.285 1.285 5 H -0.272 1.272 6 H -0.291 1.291 7 C -0.589 4.589 8 H 0.036 0.964 9 C 0.277 3.723 10 N -1.090 6.090 11 S 2.688 3.312 12 O -1.010 7.010 13 O -0.970 6.970 14 C -0.683 4.683 15 C 0.004 3.996 16 C -0.136 4.136 17 C 0.002 3.998 18 C -0.164 4.164 19 C 0.533 3.467 20 O -0.548 6.548 21 O -0.494 6.494 22 C 0.034 3.966 23 C -0.102 4.102 24 C -0.116 4.116 25 C -0.112 4.112 26 C -0.137 4.137 27 H 0.277 0.723 28 H 0.404 0.596 29 H 0.158 0.842 30 H 0.189 0.811 31 H 0.183 0.817 32 H 0.435 0.565 33 H 0.122 0.878 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.048 -19.224 -5.471 20.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.185 4.185 3 Si 0.900 3.100 4 H -0.210 1.210 5 H -0.197 1.197 6 H -0.218 1.218 7 C -0.630 4.630 8 H 0.055 0.945 9 C 0.192 3.808 10 N -0.850 5.850 11 S 2.780 3.220 12 O -1.000 7.000 13 O -0.960 6.960 14 C -0.771 4.771 15 C -0.015 4.015 16 C -0.155 4.155 17 C -0.016 4.016 18 C -0.166 4.166 19 C 0.378 3.622 20 O -0.440 6.440 21 O -0.308 6.308 22 C 0.015 3.985 23 C -0.142 4.142 24 C -0.154 4.154 25 C -0.149 4.149 26 C -0.176 4.176 27 H 0.089 0.911 28 H 0.238 0.762 29 H 0.175 0.825 30 H 0.206 0.794 31 H 0.200 0.800 32 H 0.298 0.702 33 H 0.140 0.860 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.607 -16.642 -5.907 18.528 hybrid contribution 0.858 -1.145 0.281 1.458 sum 6.465 -17.786 -5.626 19.743 Atomic orbital electron populations 1.70831 1.07358 1.32069 1.46825 1.26120 0.96454 1.04175 0.91714 0.83534 0.75119 0.74440 0.76929 1.21023 1.19704 1.21789 1.22378 0.93719 0.92556 1.54313 0.94534 1.18634 0.87379 0.92853 0.81938 1.55911 1.18267 1.88882 1.21960 1.01848 0.73287 0.74393 0.72447 1.93459 1.56211 1.87996 1.62337 1.93589 1.70691 1.46086 1.85652 1.30871 1.09594 1.19506 1.17138 1.21556 1.02078 0.89826 0.88074 1.21770 0.92476 1.00190 1.01023 1.22141 0.96743 0.94989 0.87687 1.19207 0.89770 0.97899 1.09745 1.20795 0.87504 0.79628 0.74247 1.90952 1.79560 1.32754 1.40764 1.84458 1.24937 1.45735 1.75669 1.20876 0.91329 0.97645 0.88685 1.22532 0.98369 0.96047 0.97264 1.22534 0.96579 0.94844 1.01408 1.22249 0.96740 0.99124 0.96815 1.22878 0.98652 0.96553 0.99493 0.91067 0.76208 0.82465 0.79409 0.79984 0.70227 0.86034 0.93364 0.93194 0.90607 0.90774 0.90089 0.92367 0.91109 0.93796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.35 13.27 21.45 0.28 -54.07 16 2 C 0.02 1.10 4.39 84.66 0.37 1.48 16 3 Si 1.07 55.09 29.91 68.60 2.05 57.14 16 4 H -0.28 -14.38 7.11 99.48 0.71 -13.67 16 5 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.29 -15.42 7.11 99.48 0.71 -14.71 16 7 C -0.59 -31.85 5.90 25.60 0.15 -31.70 16 8 H 0.04 2.08 7.33 -2.91 -0.02 2.06 16 9 C 0.28 12.16 0.57 3.58 0.00 12.16 16 10 N -1.09 -45.76 4.03 -152.29 -0.61 -46.37 16 11 S 2.69 117.08 5.68 -56.49 -0.32 116.76 16 12 O -1.01 -45.23 17.42 -128.00 -2.23 -47.46 16 13 O -0.97 -51.79 14.06 -128.00 -1.80 -53.59 16 14 C -0.68 -23.18 3.59 22.23 0.08 -23.10 16 15 C 0.00 0.09 9.42 22.33 0.21 0.30 16 16 C -0.14 -2.23 10.03 22.23 0.22 -2.01 16 17 C 0.00 0.04 9.62 22.54 0.22 0.26 16 18 C -0.16 -4.44 5.87 -20.10 -0.12 -4.55 16 19 C 0.53 14.22 8.26 70.33 0.58 14.80 16 20 O -0.55 -19.73 17.15 19.92 0.34 -19.38 16 21 O -0.49 -7.78 12.69 -56.27 -0.71 -8.49 16 22 C 0.03 1.21 7.21 22.54 0.16 1.37 16 23 C -0.10 -4.11 5.03 31.70 0.16 -3.95 16 24 C -0.12 -3.48 6.91 31.91 0.22 -3.26 16 25 C -0.11 -3.38 6.83 31.67 0.22 -3.16 16 26 C -0.14 -5.10 4.66 31.32 0.15 -4.95 16 27 H 0.28 15.18 4.54 -92.71 -0.42 14.76 16 28 H 0.40 15.42 8.15 -96.75 -0.79 14.63 16 29 H 0.16 3.32 7.74 -2.91 -0.02 3.30 16 30 H 0.19 1.30 8.06 -2.91 -0.02 1.27 16 31 H 0.18 1.78 7.62 -2.91 -0.02 1.76 16 32 H 0.44 3.06 9.11 -74.05 -0.67 2.39 16 33 H 0.12 5.22 7.09 -2.92 -0.02 5.20 16 34 H 0.05 2.17 7.85 -2.39 -0.02 2.15 16 35 H 0.05 2.06 6.59 -2.39 -0.02 2.05 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 2.36 4.85 -2.39 -0.01 2.35 16 41 H 0.04 1.83 7.16 -2.38 -0.02 1.81 16 Total: -1.00 -80.59 342.48 -0.39 -80.98 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -0.01 Total: 20.79 kcal Atomic # 6 Polarization: -48.93 SS G_CDS: 2.62 Total: -46.31 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -0.33 Total: -100.44 kcal Atomic # 8 Polarization: -124.52 SS G_CDS: -4.40 Total: -128.92 kcal Atomic # 14 Polarization: 55.09 SS G_CDS: 2.05 Total: 57.14 kcal Atomic # 16 Polarization: 117.08 SS G_CDS: -0.32 Total: 116.76 kcal Total: -80.59 -0.39 -80.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260194258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.804 kcal (2) G-P(sol) polarization free energy of solvation -80.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds