Wall clock time and date at job start Tue Mar 31 2020 22:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00144 * 2 1 4 4 H 1.48498 * 109.47165 * 243.77951 * 3 2 1 5 5 H 1.48505 * 109.47114 * 3.78054 * 3 2 1 6 6 H 1.48500 * 109.47201 * 123.78047 * 3 2 1 7 7 C 1.37876 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99925 * 190.20391 * 7 2 1 9 9 C 1.50698 * 120.00269 * 10.20900 * 7 2 1 10 10 N 1.46504 * 110.01575 * 295.06080 * 9 7 2 11 11 S 1.65595 * 119.99871 * 299.16379 * 10 9 7 12 12 O 1.42104 * 106.40297 * 312.79765 * 11 10 9 13 13 O 1.42104 * 106.40352 * 179.88038 * 11 10 9 14 14 C 1.76195 * 107.21992 * 66.33710 * 11 10 9 15 15 C 1.38375 * 119.84701 * 83.70792 * 14 11 10 16 16 C 1.37949 * 120.14874 * 179.97438 * 15 14 11 17 17 C 1.39624 * 119.84799 * 0.29983 * 16 15 14 18 18 C 1.47725 * 120.14679 * 179.70443 * 17 16 15 19 19 O 1.21467 * 120.00236 * 359.97438 * 18 17 16 20 20 O 1.34715 * 119.99889 * 179.97438 * 18 17 16 21 21 C 1.39636 * 119.70129 * 359.44370 * 17 16 15 22 22 C 1.37945 * 119.84276 * 0.53566 * 21 17 16 23 23 C 1.54274 * 110.03206 * 56.44777 * 9 7 2 24 24 C 1.54970 * 104.15636 * 95.75537 * 23 9 7 25 25 C 1.54887 * 102.77556 * 37.89061 * 24 23 9 26 26 C 1.53876 * 110.03553 * 173.66838 * 9 7 2 27 27 H 0.97000 * 119.99950 * 4.99970 * 1 2 3 28 28 H 0.97000 * 119.99850 * 119.16141 * 10 9 7 29 29 H 1.07999 * 119.92202 * 359.97438 * 15 14 11 30 30 H 1.07996 * 120.07397 * 180.02562 * 16 15 14 31 31 H 0.96697 * 117.00137 * 179.97438 * 20 18 17 32 32 H 1.07997 * 120.07410 * 180.27831 * 21 17 16 33 33 H 1.08006 * 119.91952 * 179.72629 * 22 21 17 34 34 H 1.08996 * 110.48414 * 214.39935 * 23 9 7 35 35 H 1.08994 * 110.48518 * 337.04933 * 23 9 7 36 36 H 1.08997 * 110.72196 * 279.57511 * 24 23 9 37 37 H 1.08997 * 110.91937 * 156.29524 * 24 23 9 38 38 H 1.09004 * 110.48525 * 203.40189 * 25 24 23 39 39 H 1.09002 * 110.49127 * 80.75856 * 25 24 23 40 40 H 1.09003 * 110.02511 * 359.94781 * 26 9 7 41 41 H 1.08997 * 110.03159 * 121.37871 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0324 1.7371 -1.2560 5 1 1.2868 2.7450 0.0923 6 1 3.1709 1.6571 1.1637 7 6 2.0045 -1.1941 -0.0005 8 1 3.0717 -1.2016 0.1652 9 6 1.2688 -2.4887 -0.2324 10 7 0.3317 -2.7367 0.8660 11 16 0.8955 -2.8999 2.4145 12 8 1.9957 -3.7969 2.3484 13 8 -0.2430 -3.1255 3.2344 14 6 1.5547 -1.3387 2.8969 15 6 0.7122 -0.3584 3.3906 16 6 1.2217 0.8660 3.7707 17 6 2.5899 1.1170 3.6502 18 6 3.1416 2.4280 4.0491 19 8 2.4045 3.2907 4.4825 20 8 4.4622 2.6668 3.9321 21 6 3.4351 0.1213 3.1562 22 6 2.9123 -1.0987 2.7803 23 6 0.5080 -2.4314 -1.5733 24 6 1.4672 -3.1115 -2.5827 25 6 2.0835 -4.2615 -1.7480 26 6 2.2704 -3.6516 -0.3434 27 1 -0.4850 0.8369 -0.0732 28 1 -0.6190 -2.8052 0.6863 29 1 -0.3466 -0.5522 3.4787 30 1 0.5631 1.6301 4.1563 31 1 4.7765 3.5395 4.2054 32 1 4.4950 0.3074 3.0647 33 1 3.5643 -1.8681 2.3939 34 1 -0.4283 -2.9851 -1.5046 35 1 0.3205 -1.3971 -1.8616 36 1 2.2392 -2.4153 -2.9103 37 1 0.9172 -3.5061 -3.4370 38 1 3.0450 -4.5622 -2.1643 39 1 1.4019 -5.1112 -1.7073 40 1 3.2887 -3.2793 -0.2305 41 1 2.0593 -4.4004 0.4200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260232707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:03 Heat of formation + Delta-G solvation = -140.057787 kcal Electronic energy + Delta-G solvation = -29344.630841 eV Core-core repulsion = 25316.274719 eV Total energy + Delta-G solvation = -4028.356122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.25607 -38.30792 -37.80608 -36.30763 -36.04420 -35.05373 -33.00452 -31.75160 -31.22424 -30.66382 -27.65673 -27.04484 -24.82153 -24.10126 -22.42995 -21.16217 -20.10604 -19.28039 -18.56961 -18.06419 -17.49491 -16.86215 -16.47112 -16.32974 -15.59241 -15.20437 -14.88853 -14.67554 -14.38956 -14.16960 -13.86448 -13.60164 -13.13330 -12.81515 -12.68301 -12.52432 -12.43650 -12.05780 -11.69031 -11.54189 -11.43303 -11.28533 -10.99074 -10.95462 -10.83718 -10.70057 -10.59714 -10.35928 -10.23019 -10.13472 -9.98890 -9.72859 -9.46682 -9.33986 -9.13569 -8.54583 -8.40820 -8.04131 -6.32631 -4.42953 0.70750 1.44733 1.81068 2.61510 3.07735 3.15392 3.23278 3.28595 3.87497 4.09167 4.21668 4.65152 4.99517 5.05987 5.15280 5.28266 5.41885 5.63164 5.71561 5.75092 5.76326 5.90711 6.00604 6.34799 6.38106 6.40222 6.40609 6.53008 6.54526 6.56883 6.60798 6.65374 6.69801 6.84145 6.91718 7.16697 7.18824 7.21042 7.29224 7.52058 7.72796 7.92059 8.15415 8.34618 8.64536 9.27587 10.69027 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.005971 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.049489 B = 4688.284886 C = 5581.999337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.254 1.254 7 C -0.535 4.535 8 H 0.068 0.932 9 C 0.297 3.703 10 N -1.072 6.072 11 S 2.692 3.308 12 O -0.973 6.973 13 O -0.995 6.995 14 C -0.582 4.582 15 C -0.023 4.023 16 C -0.084 4.084 17 C -0.095 4.095 18 C 0.528 3.472 19 O -0.518 6.518 20 O -0.510 6.510 21 C -0.089 4.089 22 C -0.006 4.006 23 C -0.093 4.093 24 C -0.121 4.121 25 C -0.121 4.121 26 C -0.143 4.143 27 H 0.265 0.735 28 H 0.401 0.599 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.410 0.590 32 H 0.134 0.866 33 H 0.144 0.856 34 H 0.039 0.961 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.174 -0.568 2.067 4.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.111 4.111 3 Si 0.682 3.318 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.178 1.178 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.212 3.788 10 N -0.831 5.831 11 S 2.782 3.218 12 O -0.964 6.964 13 O -0.985 6.985 14 C -0.668 4.668 15 C -0.042 4.042 16 C -0.103 4.103 17 C -0.096 4.096 18 C 0.373 3.627 19 O -0.408 6.408 20 O -0.321 6.321 21 C -0.108 4.108 22 C -0.025 4.025 23 C -0.133 4.133 24 C -0.160 4.160 25 C -0.158 4.158 26 C -0.182 4.182 27 H 0.075 0.925 28 H 0.235 0.765 29 H 0.156 0.844 30 H 0.151 0.849 31 H 0.268 0.732 32 H 0.152 0.848 33 H 0.162 0.838 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.838 -1.347 2.724 4.896 hybrid contribution 0.402 2.754 -0.289 2.798 sum 4.241 1.408 2.435 5.088 Atomic orbital electron populations 1.69985 1.05831 1.27514 1.44976 1.24810 0.94504 0.98493 0.93307 0.87235 0.80931 0.83856 0.79741 1.20406 1.21505 1.17795 1.21588 0.94477 0.90391 1.51011 0.91432 1.18455 0.85135 0.91536 0.83667 1.55960 1.17059 1.88199 1.21878 1.01672 0.73002 0.73847 0.73236 1.93499 1.55132 1.60755 1.86977 1.93501 1.50850 1.85577 1.68585 1.31161 1.03004 1.24006 1.08615 1.20585 0.99316 0.91363 0.92921 1.21126 0.93122 0.97429 0.98595 1.19076 0.94611 0.91097 1.04847 1.21136 0.79697 0.88087 0.73822 1.90853 1.59894 1.46876 1.43193 1.84600 1.25773 1.41628 1.80123 1.21316 0.99736 0.92679 0.97058 1.20711 0.93499 0.96557 0.91731 1.22358 0.95543 1.01024 0.94425 1.22452 0.99112 0.97272 0.97116 1.22306 0.99156 0.97497 0.96890 1.22960 1.00426 0.98686 0.96098 0.92474 0.76535 0.84448 0.84909 0.73247 0.84818 0.83819 0.94202 0.89966 0.91866 0.93561 0.93241 0.93008 0.91871 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.37 11.51 55.43 0.64 -18.74 16 2 C 0.10 2.17 4.26 -17.82 -0.08 2.10 16 3 Si 0.86 18.67 28.99 -169.99 -4.93 13.74 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.25 -5.29 4.93 56.52 0.28 -5.01 16 7 C -0.53 -11.54 4.93 -34.44 -0.17 -11.71 16 8 H 0.07 1.47 6.77 -52.48 -0.36 1.12 16 9 C 0.30 5.96 0.61 -131.85 -0.08 5.88 16 10 N -1.07 -21.07 4.89 0.52 0.00 -21.07 16 11 S 2.69 53.28 5.62 -107.50 -0.60 52.68 16 12 O -0.97 -20.07 13.91 -57.17 -0.80 -20.87 16 13 O -0.99 -21.25 17.44 -57.17 -1.00 -22.25 16 14 C -0.58 -11.15 4.12 -39.49 -0.16 -11.32 16 15 C -0.02 -0.42 9.50 -39.64 -0.38 -0.80 16 16 C -0.08 -1.51 9.60 -39.17 -0.38 -1.89 16 17 C -0.09 -1.69 4.76 -104.98 -0.50 -2.19 16 18 C 0.53 8.81 8.27 34.61 0.29 9.09 16 19 O -0.52 -9.62 17.13 -19.24 -0.33 -9.95 16 20 O -0.51 -6.64 12.68 -40.53 -0.51 -7.16 16 21 C -0.09 -1.52 8.15 -39.17 -0.32 -1.83 16 22 C -0.01 -0.11 7.30 -39.64 -0.29 -0.39 16 23 C -0.09 -1.81 5.56 -25.02 -0.14 -1.95 16 24 C -0.12 -2.07 6.91 -24.70 -0.17 -2.24 16 25 C -0.12 -2.01 6.83 -25.07 -0.17 -2.18 16 26 C -0.14 -2.71 5.31 -25.61 -0.14 -2.85 16 27 H 0.27 6.12 8.32 -40.82 -0.34 5.78 16 28 H 0.40 7.55 8.41 -34.47 -0.29 7.26 16 29 H 0.14 2.44 7.76 -52.49 -0.41 2.04 16 30 H 0.13 2.23 7.65 -52.49 -0.40 1.83 16 31 H 0.41 3.19 9.11 45.56 0.42 3.60 16 32 H 0.13 1.99 7.61 -52.49 -0.40 1.59 16 33 H 0.14 2.45 7.47 -52.48 -0.39 2.05 16 34 H 0.04 0.74 7.78 -51.93 -0.40 0.33 16 35 H 0.08 1.78 6.33 -51.93 -0.33 1.45 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.21 7.38 -51.93 -0.38 0.83 16 41 H 0.08 1.50 5.67 -51.93 -0.29 1.20 16 LS Contribution 340.22 15.07 5.13 5.13 Total: -1.00 -27.86 340.22 -9.27 -37.13 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -4.19 Total: 13.63 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -2.68 Total: -22.27 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.64 Total: -39.81 kcal Atomic # 8 Polarization: -57.59 SS G_CDS: -2.64 Total: -60.22 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.93 Total: 13.74 kcal Atomic # 16 Polarization: 53.28 SS G_CDS: -0.60 Total: 52.68 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.86 -9.27 -37.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260232707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.930 kcal (2) G-P(sol) polarization free energy of solvation -27.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds