Wall clock time and date at job start Tue Mar 31 2020 22:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00331 * 2 1 4 4 H 1.48503 * 109.47044 * 269.99793 * 3 2 1 5 5 H 1.48498 * 109.47167 * 29.99857 * 3 2 1 6 6 H 1.48495 * 109.46961 * 149.99814 * 3 2 1 7 7 C 1.38950 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99931 * 0.02562 * 7 2 1 9 9 N 1.37096 * 120.00293 * 180.02562 * 7 2 1 10 10 C 1.34774 * 120.00099 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00173 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00024 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47385 * 179.97438 * 12 10 9 14 14 C 1.34771 * 120.00218 * 179.97438 * 13 12 10 15 15 O 1.21586 * 120.00450 * 0.02562 * 14 13 12 16 16 C 1.47606 * 120.00239 * 180.02562 * 14 13 12 17 17 C 1.41543 * 120.49933 * 5.61140 * 16 14 13 18 18 N 1.30903 * 120.06892 * 179.97438 * 17 16 14 19 19 C 1.34157 * 121.16839 * 0.02648 * 18 17 16 20 20 C 1.38706 * 132.24408 * 179.97438 * 19 18 17 21 21 C 1.38848 * 107.66898 * 180.02562 * 20 19 18 22 22 N 1.31292 * 108.99265 * 0.02562 * 21 20 19 23 23 N 1.37258 * 120.90007 * 359.72159 * 19 18 17 24 24 C 1.36073 * 119.97834 * 0.53344 * 23 19 18 25 25 C 1.50697 * 120.55966 * 179.75050 * 24 23 19 26 26 F 1.39903 * 109.47137 * 237.26429 * 25 24 23 27 27 F 1.39905 * 109.47334 * 117.26536 * 25 24 23 28 28 H 0.96999 * 119.99304 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00035 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47689 * 59.99051 * 12 10 9 31 31 H 1.09003 * 109.47180 * 299.99527 * 12 10 9 32 32 H 0.97001 * 120.00023 * 0.02562 * 13 12 10 33 33 H 1.08003 * 119.96680 * 359.97438 * 17 16 14 34 34 H 1.07996 * 126.16862 * 359.97438 * 20 19 18 35 35 H 1.08004 * 125.50209 * 180.02562 * 21 20 19 36 36 H 1.09001 * 109.47094 * 357.26227 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2035 0.0011 10 6 4.0536 -2.3707 0.0011 11 8 3.4471 -3.4211 0.0011 12 6 5.5606 -2.3708 0.0011 13 7 6.0489 -3.7520 0.0017 14 6 7.3739 -3.9983 0.0013 15 8 8.1641 -3.0742 0.0009 16 6 7.8659 -5.3899 0.0013 17 6 6.9610 -6.4718 -0.1174 18 7 7.4066 -7.7027 -0.1170 19 6 8.7171 -7.9666 -0.0046 20 6 9.4298 -9.1563 0.0224 21 6 10.7748 -8.8389 0.1575 22 7 10.9022 -7.5333 0.2127 23 7 9.6336 -6.9510 0.1079 24 6 9.2158 -5.6561 0.1173 25 6 10.2101 -4.5310 0.2458 26 9 9.8877 -3.7486 1.3598 27 9 10.1704 -3.7395 -0.9072 28 1 -0.4849 0.8401 -0.0004 29 1 3.8649 -0.3634 0.0007 30 1 5.9240 -1.8568 0.8909 31 1 5.9240 -1.8570 -0.8890 32 1 5.4186 -4.4892 0.0016 33 1 5.9018 -6.2816 -0.2086 34 1 9.0136 -10.1503 -0.0480 35 1 11.5852 -9.5510 0.2088 36 1 11.2115 -4.9435 0.3691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271778880.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:07 Heat of formation + Delta-G solvation = -29.104144 kcal Electronic energy + Delta-G solvation = -28685.428556 eV Core-core repulsion = 24036.795766 eV Total energy + Delta-G solvation = -4648.632790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.093 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.22396 -47.18828 -42.91073 -40.17823 -38.63817 -38.00646 -35.23265 -34.66011 -33.94162 -32.01798 -31.80415 -29.85720 -28.73285 -27.44680 -24.87851 -24.38001 -23.86258 -21.63514 -21.03181 -19.82842 -19.37194 -18.99325 -18.16386 -17.71937 -17.63007 -17.14979 -16.70186 -16.48094 -15.87654 -15.58578 -15.41564 -15.03859 -14.79806 -14.55808 -14.35002 -14.13637 -13.83882 -13.66490 -13.47027 -13.20607 -13.12810 -13.08024 -12.60428 -12.26607 -12.25955 -11.90575 -11.84658 -11.79548 -11.28713 -10.70642 -10.69175 -10.13110 -10.10911 -10.09449 -9.76636 -9.17014 -8.87949 -8.53584 -8.37431 -6.46647 -3.99705 -0.41946 0.07201 1.20308 1.90397 2.49090 2.56198 2.90582 2.95180 3.00232 3.04502 3.09327 3.29458 3.46920 3.50365 3.69997 3.98369 4.04359 4.27868 4.40354 4.44077 4.54918 4.64006 4.65635 4.84947 5.07883 5.25329 5.41667 5.53683 5.64726 5.68072 5.69171 5.88518 6.22985 6.74529 6.97827 7.30485 7.39517 7.88897 7.98668 8.37172 8.74965 9.22721 9.54359 10.65193 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.022303 B = 0.002628 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.149762 B =10651.802705 C =11723.668090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.311 4.311 8 H 0.123 0.877 9 N -0.572 5.572 10 C 0.435 3.565 11 O -0.580 6.580 12 C 0.108 3.892 13 N -0.692 5.692 14 C 0.565 3.435 15 O -0.514 6.514 16 C -0.190 4.190 17 C 0.208 3.792 18 N -0.443 5.443 19 C 0.260 3.740 20 C -0.250 4.250 21 C 0.102 3.898 22 N -0.310 5.310 23 N -0.305 5.305 24 C 0.170 3.830 25 C 0.336 3.664 26 F -0.169 7.169 27 F -0.167 7.167 28 H 0.276 0.724 29 H 0.375 0.625 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.412 0.588 33 H 0.196 0.804 34 H 0.171 0.829 35 H 0.207 0.793 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.837 -13.178 0.244 25.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.440 4.440 8 H 0.140 0.860 9 N -0.210 5.210 10 C 0.221 3.779 11 O -0.465 6.465 12 C -0.020 4.020 13 N -0.347 5.347 14 C 0.348 3.652 15 O -0.390 6.390 16 C -0.200 4.200 17 C 0.022 3.978 18 N -0.153 5.153 19 C 0.035 3.965 20 C -0.280 4.280 21 C -0.076 4.076 22 N -0.134 5.134 23 N -0.075 5.075 24 C 0.049 3.951 25 C 0.281 3.719 26 F -0.150 7.150 27 F -0.148 7.148 28 H 0.087 0.913 29 H 0.208 0.792 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.251 0.749 33 H 0.212 0.788 34 H 0.189 0.811 35 H 0.223 0.777 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 22.245 -13.009 0.288 25.771 hybrid contribution -0.012 1.062 -0.009 1.062 sum 22.233 -11.947 0.279 25.241 Atomic orbital electron populations 1.69616 1.05739 1.27925 1.47713 1.25079 0.95544 0.98229 0.96999 0.86673 0.79930 0.83726 0.79188 1.19341 1.19933 1.19177 1.19442 0.78855 0.96843 1.48849 0.85980 1.42110 1.07760 1.06124 1.64972 1.19535 0.87834 0.84996 0.85514 1.90541 1.69087 1.30840 1.55995 1.21071 0.94116 0.82754 1.04017 1.45407 1.05832 1.10027 1.73399 1.17227 0.83125 0.86448 0.78375 1.90920 1.54633 1.44404 1.49055 1.20751 0.91644 0.97784 1.09841 1.23766 1.01117 0.85453 0.87468 1.68182 1.10198 1.22183 1.14725 1.20946 0.85503 0.89551 1.00477 1.21143 0.91721 0.96877 1.18274 1.24027 0.97481 0.92416 0.93711 1.77889 0.94893 1.09810 1.30807 1.46872 1.09021 1.04490 1.47139 1.21550 0.94653 0.84153 0.94734 1.19854 0.96483 0.81421 0.74186 1.93112 1.94350 1.75795 1.51727 1.93117 1.97320 1.75211 1.49149 0.91294 0.79167 0.89060 0.89041 0.74892 0.78764 0.81140 0.77675 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.29 13.96 55.50 0.77 -23.52 16 2 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.43 27.74 -169.99 -4.71 13.71 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.08 6.52 56.52 0.37 -4.71 16 7 C -0.31 -8.27 10.16 -14.93 -0.15 -8.42 16 8 H 0.12 3.70 7.39 -52.48 -0.39 3.31 16 9 N -0.57 -12.62 5.09 -10.96 -0.06 -12.68 16 10 C 0.44 8.88 7.85 -10.99 -0.09 8.79 16 11 O -0.58 -13.59 15.24 5.55 0.08 -13.51 16 12 C 0.11 1.67 6.15 -5.20 -0.03 1.64 16 13 N -0.69 -9.71 5.48 -62.51 -0.34 -10.05 16 14 C 0.57 7.87 7.55 -12.44 -0.09 7.77 16 15 O -0.51 -8.31 11.45 5.29 0.06 -8.25 16 16 C -0.19 -2.29 5.86 -104.88 -0.61 -2.91 16 17 C 0.21 2.21 10.77 -16.69 -0.18 2.03 16 18 N -0.44 -5.13 10.45 -11.91 -0.12 -5.26 16 19 C 0.26 2.97 7.91 -155.33 -1.23 1.74 16 20 C -0.25 -2.14 10.91 -39.18 -0.43 -2.56 16 21 C 0.10 0.74 11.95 -17.56 -0.21 0.53 16 22 N -0.31 -3.16 12.17 30.49 0.37 -2.79 16 23 N -0.30 -3.54 3.88 -7.99 -0.03 -3.57 16 24 C 0.17 2.06 6.41 -80.77 -0.52 1.54 16 25 C 0.34 3.95 5.02 36.00 0.18 4.13 16 26 F -0.17 -2.30 15.02 2.25 0.03 -2.27 16 27 F -0.17 -2.28 15.14 2.25 0.03 -2.25 16 28 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.38 7.27 5.76 -40.82 -0.24 7.04 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.41 5.45 5.54 -40.82 -0.23 5.22 16 33 H 0.20 1.60 6.51 -52.48 -0.34 1.26 16 34 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.21 0.54 8.06 -52.48 -0.42 0.12 16 36 H 0.13 1.18 7.69 -51.93 -0.40 0.78 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -33.54 326.00 -4.90 -38.44 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -2.45 Total: 11.68 kcal Atomic # 6 Polarization: 18.85 SS G_CDS: -3.46 Total: 15.39 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.59 Total: -57.86 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: 0.15 Total: -21.76 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.07 Total: -4.51 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -4.71 Total: 13.71 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.54 -4.90 -38.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271778880.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.340 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds