Wall clock time and date at job start Tue Mar 31 2020 22:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00331 * 2 1 4 4 H 1.48503 * 109.47044 * 269.99793 * 3 2 1 5 5 H 1.48498 * 109.47167 * 29.99857 * 3 2 1 6 6 H 1.48495 * 109.46961 * 149.99814 * 3 2 1 7 7 C 1.38950 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99931 * 0.02562 * 7 2 1 9 9 N 1.37096 * 120.00293 * 180.02562 * 7 2 1 10 10 C 1.34774 * 120.00099 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00173 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00024 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47385 * 179.97438 * 12 10 9 14 14 C 1.34771 * 120.00218 * 179.97438 * 13 12 10 15 15 O 1.21586 * 120.00450 * 0.02562 * 14 13 12 16 16 C 1.47606 * 120.00239 * 180.02562 * 14 13 12 17 17 C 1.41543 * 120.49933 * 5.61140 * 16 14 13 18 18 N 1.30903 * 120.06892 * 179.97438 * 17 16 14 19 19 C 1.34157 * 121.16839 * 0.02648 * 18 17 16 20 20 C 1.38706 * 132.24408 * 179.97438 * 19 18 17 21 21 C 1.38848 * 107.66898 * 180.02562 * 20 19 18 22 22 N 1.31292 * 108.99265 * 0.02562 * 21 20 19 23 23 N 1.37258 * 120.90007 * 359.72159 * 19 18 17 24 24 C 1.36073 * 119.97834 * 0.53344 * 23 19 18 25 25 C 1.50697 * 120.55966 * 179.75050 * 24 23 19 26 26 F 1.39903 * 109.47137 * 237.26429 * 25 24 23 27 27 F 1.39905 * 109.47334 * 117.26536 * 25 24 23 28 28 H 0.96999 * 119.99304 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00035 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47689 * 59.99051 * 12 10 9 31 31 H 1.09003 * 109.47180 * 299.99527 * 12 10 9 32 32 H 0.97001 * 120.00023 * 0.02562 * 13 12 10 33 33 H 1.08003 * 119.96680 * 359.97438 * 17 16 14 34 34 H 1.07996 * 126.16862 * 359.97438 * 20 19 18 35 35 H 1.08004 * 125.50209 * 180.02562 * 21 20 19 36 36 H 1.09001 * 109.47094 * 357.26227 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2035 0.0011 10 6 4.0536 -2.3707 0.0011 11 8 3.4471 -3.4211 0.0011 12 6 5.5606 -2.3708 0.0011 13 7 6.0489 -3.7520 0.0017 14 6 7.3739 -3.9983 0.0013 15 8 8.1641 -3.0742 0.0009 16 6 7.8659 -5.3899 0.0013 17 6 6.9610 -6.4718 -0.1174 18 7 7.4066 -7.7027 -0.1170 19 6 8.7171 -7.9666 -0.0046 20 6 9.4298 -9.1563 0.0224 21 6 10.7748 -8.8389 0.1575 22 7 10.9022 -7.5333 0.2127 23 7 9.6336 -6.9510 0.1079 24 6 9.2158 -5.6561 0.1173 25 6 10.2101 -4.5310 0.2458 26 9 9.8877 -3.7486 1.3598 27 9 10.1704 -3.7395 -0.9072 28 1 -0.4849 0.8401 -0.0004 29 1 3.8649 -0.3634 0.0007 30 1 5.9240 -1.8568 0.8909 31 1 5.9240 -1.8570 -0.8890 32 1 5.4186 -4.4892 0.0016 33 1 5.9018 -6.2816 -0.2086 34 1 9.0136 -10.1503 -0.0480 35 1 11.5852 -9.5510 0.2088 36 1 11.2115 -4.9435 0.3691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271778880.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:06 Heat of formation + Delta-G solvation = -54.631301 kcal Electronic energy + Delta-G solvation = -28686.535496 eV Core-core repulsion = 24036.795766 eV Total energy + Delta-G solvation = -4649.739730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.093 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.19265 -48.17316 -43.67059 -41.31511 -40.17769 -38.94890 -36.40649 -35.93625 -35.40718 -33.82795 -32.79194 -30.60874 -29.88965 -28.59270 -26.40373 -25.28010 -24.84922 -22.46373 -22.01805 -21.49475 -20.64806 -20.22005 -19.35034 -18.73086 -18.57277 -18.09961 -17.65933 -17.34589 -17.29246 -16.83245 -16.78278 -16.56799 -15.70344 -15.69472 -15.41182 -15.23936 -14.92049 -14.88355 -14.47530 -14.41418 -14.26353 -14.07068 -14.00098 -13.97412 -13.59846 -12.95849 -12.75157 -12.64640 -12.61902 -12.42788 -11.99420 -11.67052 -11.56270 -11.07552 -10.91260 -10.65013 -10.35764 -10.27427 -9.28335 -8.43985 -6.05763 -1.27965 -0.71649 0.41330 1.17447 1.32566 1.35512 1.44974 1.60060 1.64240 1.80922 1.92361 2.13823 2.21845 2.55713 2.69753 2.83497 2.86264 3.12655 3.16050 3.50081 3.62340 3.63820 3.78558 3.90671 4.00335 4.21267 4.42113 4.42260 4.55205 4.81191 4.91479 5.04609 5.31030 5.49175 5.90026 6.05423 6.16774 6.23739 6.49293 6.80111 6.84353 7.30722 7.79044 8.72248 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.022303 B = 0.002628 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.149762 B =10651.802705 C =11723.668090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.957 3.043 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.231 1.231 7 C -0.329 4.329 8 H 0.066 0.934 9 N -0.578 5.578 10 C 0.446 3.554 11 O -0.612 6.612 12 C 0.119 3.881 13 N -0.693 5.693 14 C 0.572 3.428 15 O -0.536 6.536 16 C -0.202 4.202 17 C 0.209 3.791 18 N -0.455 5.455 19 C 0.225 3.775 20 C -0.240 4.240 21 C 0.119 3.881 22 N -0.328 5.328 23 N -0.316 5.316 24 C 0.170 3.830 25 C 0.333 3.667 26 F -0.181 7.181 27 F -0.180 7.180 28 H 0.280 0.720 29 H 0.392 0.608 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.415 0.585 33 H 0.211 0.789 34 H 0.195 0.805 35 H 0.254 0.746 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.115 -13.512 0.320 28.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.209 4.209 3 Si 0.777 3.223 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.458 4.458 8 H 0.084 0.916 9 N -0.218 5.218 10 C 0.233 3.767 11 O -0.498 6.498 12 C -0.008 4.008 13 N -0.347 5.347 14 C 0.357 3.643 15 O -0.414 6.414 16 C -0.213 4.213 17 C 0.022 3.978 18 N -0.165 5.165 19 C 0.002 3.998 20 C -0.269 4.269 21 C -0.060 4.060 22 N -0.151 5.151 23 N -0.087 5.087 24 C 0.048 3.952 25 C 0.278 3.722 26 F -0.162 7.162 27 F -0.160 7.160 28 H 0.090 0.910 29 H 0.228 0.772 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.255 0.745 33 H 0.228 0.772 34 H 0.212 0.788 35 H 0.270 0.730 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 25.550 -13.381 0.365 28.844 hybrid contribution -0.936 0.861 -0.032 1.273 sum 24.614 -12.519 0.333 27.616 Atomic orbital electron populations 1.69782 1.08048 1.29395 1.49364 1.26055 0.96400 1.02583 0.95816 0.85468 0.79655 0.77143 0.80012 1.18181 1.20106 1.15400 1.19027 0.80955 0.95253 1.50560 0.91637 1.41919 1.06126 1.07500 1.66207 1.20437 0.89929 0.83918 0.82416 1.90535 1.70702 1.32161 1.56365 1.20980 0.89691 0.84086 1.06003 1.45370 1.06148 1.09542 1.73684 1.17339 0.82547 0.86990 0.77441 1.90906 1.55042 1.45295 1.50179 1.20548 0.92119 0.96955 1.11656 1.23949 1.01598 0.84996 0.87219 1.68183 1.10738 1.22359 1.15184 1.21463 0.85688 0.90560 1.02060 1.21666 0.92089 0.97067 1.16112 1.24872 0.98217 0.91925 0.90997 1.77888 0.94555 1.11349 1.31321 1.46982 1.09528 1.04177 1.48014 1.21584 0.94674 0.84726 0.94179 1.20175 0.97731 0.80981 0.73273 1.93078 1.94563 1.76231 1.52344 1.93082 1.97435 1.75659 1.49872 0.90991 0.77191 0.87074 0.86880 0.74502 0.77247 0.78789 0.72987 0.82422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.55 13.96 21.66 0.30 -53.25 16 2 C -0.01 -0.45 5.50 84.93 0.47 0.01 16 3 Si 0.96 37.16 27.74 68.60 1.90 39.07 16 4 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.23 -7.55 6.52 99.48 0.65 -6.90 16 7 C -0.33 -18.05 10.16 84.04 0.85 -17.20 16 8 H 0.07 4.26 7.39 -2.91 -0.02 4.23 16 9 N -0.58 -25.19 5.09 -306.99 -1.56 -26.76 16 10 C 0.45 17.98 7.85 87.66 0.69 18.67 16 11 O -0.61 -29.25 15.24 -3.06 -0.05 -29.30 16 12 C 0.12 3.48 6.15 85.63 0.53 4.00 16 13 N -0.69 -18.69 5.48 -469.95 -2.58 -21.27 16 14 C 0.57 15.41 7.55 86.72 0.65 16.07 16 15 O -0.54 -16.75 11.45 -3.99 -0.05 -16.79 16 16 C -0.20 -4.77 5.86 -20.03 -0.12 -4.89 16 17 C 0.21 4.36 10.77 85.65 0.92 5.28 16 18 N -0.46 -10.18 10.45 -191.60 -2.00 -12.19 16 19 C 0.23 4.80 7.91 133.01 1.05 5.85 16 20 C -0.24 -3.40 10.91 22.53 0.25 -3.16 16 21 C 0.12 1.29 11.95 84.92 1.01 2.31 16 22 N -0.33 -5.88 12.17 -57.45 -0.70 -6.58 16 23 N -0.32 -6.90 3.88 -179.19 -0.70 -7.59 16 24 C 0.17 3.97 6.41 41.86 0.27 4.24 16 25 C 0.33 7.53 5.02 71.24 0.36 7.89 16 26 F -0.18 -4.80 15.02 44.97 0.68 -4.13 16 27 F -0.18 -4.77 15.14 44.97 0.68 -4.09 16 28 H 0.28 14.87 8.31 -92.71 -0.77 14.10 16 29 H 0.39 14.28 5.76 -92.71 -0.53 13.74 16 30 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.42 10.79 5.54 -92.71 -0.51 10.28 16 33 H 0.21 3.41 6.51 -2.91 -0.02 3.39 16 34 H 0.19 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.25 0.01 8.06 -2.91 -0.02 -0.01 16 36 H 0.16 2.62 7.69 -2.39 -0.02 2.61 16 Total: -1.00 -76.76 326.00 2.97 -73.80 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.10 Total: 30.01 kcal Atomic # 6 Polarization: 32.14 SS G_CDS: 6.93 Total: 39.07 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -7.23 Total: -127.63 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -0.09 Total: -46.09 kcal Atomic # 9 Polarization: -9.58 SS G_CDS: 1.36 Total: -8.22 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 1.90 Total: 39.07 kcal Total: -76.76 2.97 -73.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271778880.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.165 kcal (2) G-P(sol) polarization free energy of solvation -76.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds