Wall clock time and date at job start Tue Mar 31 2020 23:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 119.99883 * 2 1 4 4 N 1.46494 * 109.47139 * 124.99702 * 3 2 1 5 5 C 1.35064 * 125.57094 * 269.95677 * 4 3 2 6 6 O 1.21300 * 127.27853 * 0.02562 * 5 4 3 7 7 C 1.49972 * 105.43359 * 179.83685 * 5 4 3 8 8 O 1.21304 * 127.28588 * 180.25533 * 7 5 4 9 9 N 1.35061 * 105.43341 * 0.33217 * 7 5 4 10 10 C 1.46497 * 125.56544 * 179.97438 * 9 7 5 11 11 C 1.50700 * 109.47128 * 269.68864 * 10 9 7 12 12 O 1.20822 * 119.99958 * 0.02562 * 11 10 9 13 13 O 1.34234 * 120.00068 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99938 * 179.97438 * 13 11 10 15 15 C 1.50704 * 109.47016 * 179.97438 * 14 13 11 16 16 O 1.21296 * 119.99980 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99643 * 180.02562 * 15 14 13 18 18 C 1.37102 * 119.99435 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00513 * 359.97438 * 18 17 15 20 20 C 1.38947 * 119.99665 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00005 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 120.00231 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46609 * 90.00216 * 22 20 18 24 24 H 1.48490 * 109.47204 * 209.99925 * 22 20 18 25 25 H 1.48495 * 109.47076 * 330.00438 * 22 20 18 26 26 C 1.34274 * 108.86521 * 359.66363 * 9 7 5 27 27 O 1.21483 * 124.29817 * 180.24852 * 26 9 7 28 28 H 1.07998 * 120.00097 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99925 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00558 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47106 * 4.99625 * 3 2 1 32 32 H 1.08997 * 109.46761 * 244.99800 * 3 2 1 33 33 H 1.09004 * 109.47268 * 149.69004 * 10 9 7 34 34 H 1.08997 * 109.47471 * 29.69411 * 10 9 7 35 35 H 1.08996 * 109.47465 * 299.99911 * 14 13 11 36 36 H 1.08999 * 109.47008 * 59.99921 * 14 13 11 37 37 H 0.96994 * 120.00272 * 359.97438 * 17 15 14 38 38 H 0.97005 * 119.99906 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.7134 1.7971 2.3681 6 8 1.6641 2.2657 2.7565 7 6 3.9723 1.6074 3.1607 8 8 4.1565 1.8890 4.3261 9 7 4.8584 1.0582 2.3019 10 6 6.2395 0.6895 2.6225 11 6 7.1490 1.8584 2.3440 12 8 6.6905 2.8934 1.9215 13 8 8.4685 1.7498 2.5652 14 6 9.2838 2.9154 2.2741 15 6 10.7268 2.6086 2.5820 16 8 11.0374 1.5153 3.0056 17 7 11.6720 3.5495 2.3876 18 6 12.9849 3.2702 2.6673 19 1 13.2616 2.2965 3.0436 20 6 13.9594 4.2400 2.4664 21 7 15.2177 3.9725 2.7348 22 14 13.4810 5.9241 1.8147 23 1 13.1714 6.8257 2.9533 24 1 14.6070 6.4887 1.0283 25 1 12.2844 5.7965 0.9447 26 6 4.2645 0.8990 1.1082 27 8 4.8079 0.4233 0.1313 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3586 2.1317 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 6.5407 -0.1595 2.0088 34 1 6.3081 0.4187 3.6761 35 1 9.1840 3.1746 1.2202 36 1 8.9520 3.7532 2.8873 37 1 11.4236 4.4239 2.0493 38 1 15.8981 4.6495 2.5942 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322591136.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:40 Heat of formation + Delta-G solvation = -131.235072 kcal Electronic energy + Delta-G solvation = -28445.403442 eV Core-core repulsion = 23871.136687 eV Total energy + Delta-G solvation = -4574.266754 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.104 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.91727 -40.68951 -39.76010 -39.37720 -38.39852 -37.01693 -36.71981 -36.20291 -34.24700 -34.11293 -31.84961 -30.72752 -28.72598 -27.17334 -26.10404 -24.56619 -22.91481 -22.59275 -21.22539 -20.59350 -19.72383 -18.74396 -18.64406 -18.40505 -17.65674 -17.55183 -17.20502 -16.78981 -16.67243 -16.03079 -15.80246 -15.65884 -15.42830 -15.03400 -14.98010 -14.70815 -14.55129 -14.08838 -13.69855 -13.26148 -13.19400 -13.00017 -12.89750 -12.41717 -12.37502 -12.25076 -12.12994 -11.56476 -11.31700 -11.30148 -10.82688 -10.70975 -10.67552 -10.62651 -10.43186 -10.12918 -10.08375 -9.71689 -8.73218 -8.33351 -6.42633 -3.95829 -0.21310 0.95929 1.28251 1.82694 1.89417 1.92306 2.02116 2.51299 2.95938 3.00854 3.09876 3.32669 3.49532 3.94617 4.00388 4.12472 4.17233 4.32940 4.48550 4.61551 4.64136 4.68529 4.77577 4.94602 5.05339 5.07176 5.24050 5.27233 5.45748 5.60320 5.91728 5.96744 6.02017 6.11385 6.24522 6.61720 6.95835 7.37168 7.49632 7.96409 8.43164 8.79710 9.25716 9.60126 10.69427 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.025350 B = 0.002101 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.250468 B =13322.607656 C =13392.108622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.190 4.190 3 C 0.149 3.851 4 N -0.568 5.568 5 C 0.516 3.484 6 O -0.407 6.407 7 C 0.513 3.487 8 O -0.400 6.400 9 N -0.564 5.564 10 C 0.132 3.868 11 C 0.447 3.553 12 O -0.505 6.505 13 O -0.315 6.315 14 C 0.059 3.941 15 C 0.446 3.554 16 O -0.556 6.556 17 N -0.577 5.577 18 C -0.309 4.309 19 H 0.123 0.877 20 C 0.046 3.954 21 N -0.873 5.873 22 Si 0.879 3.121 23 H -0.268 1.268 24 H -0.274 1.274 25 H -0.268 1.268 26 C 0.716 3.284 27 O -0.478 6.478 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.373 0.627 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.134 -5.313 -5.707 30.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.208 4.208 3 C 0.030 3.970 4 N -0.317 5.317 5 C 0.296 3.704 6 O -0.271 6.271 7 C 0.293 3.707 8 O -0.262 6.262 9 N -0.314 5.314 10 C 0.010 3.990 11 C 0.287 3.713 12 O -0.393 6.393 13 O -0.229 6.229 14 C -0.018 4.018 15 C 0.231 3.769 16 O -0.438 6.438 17 N -0.217 5.217 18 C -0.437 4.437 19 H 0.141 0.859 20 C -0.158 4.158 21 N -0.512 5.512 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.194 1.194 26 C 0.419 3.581 27 O -0.346 6.346 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.137 0.863 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.169 0.831 34 H 0.168 0.832 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.206 0.794 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -28.940 -5.493 -5.215 29.915 hybrid contribution -0.078 1.617 -0.685 1.758 sum -29.018 -3.876 -5.900 29.864 Atomic orbital electron populations 1.24026 0.95544 1.02818 0.96675 1.23133 0.96390 0.98203 1.03117 1.20943 0.91090 0.97680 0.87286 1.46749 1.13026 1.58125 1.13793 1.20755 0.89020 0.78121 0.82524 1.90854 1.25934 1.36725 1.73545 1.20903 0.85622 0.77384 0.86814 1.90889 1.79666 1.42480 1.13208 1.46248 1.13429 1.59345 1.12332 1.21112 0.75059 0.95429 1.07387 1.23658 0.83124 0.89409 0.75066 1.90696 1.76695 1.30294 1.41647 1.86519 1.17412 1.41554 1.77385 1.22841 0.90438 0.86057 1.02513 1.19118 0.85072 0.86516 0.86162 1.90612 1.81550 1.22906 1.48757 1.42027 1.07635 1.12896 1.59169 1.19425 0.79468 1.02853 1.41969 0.85931 1.25043 0.95010 0.98427 0.97368 1.69613 1.00008 1.34989 1.46590 0.86680 0.78910 0.84266 0.79657 1.19374 1.19902 1.19381 1.15815 0.80926 0.78200 0.83176 1.91063 1.66510 1.43981 1.33005 0.87857 0.87505 0.86330 0.87512 0.86833 0.83092 0.83204 0.89146 0.89161 0.79373 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 14.32 29.02 0.42 -0.19 16 2 C -0.19 -0.94 9.85 -36.02 -0.35 -1.29 16 3 C 0.15 0.80 6.30 -5.19 -0.03 0.77 16 4 N -0.57 -4.49 2.64 -122.52 -0.32 -4.81 16 5 C 0.52 4.77 8.31 -11.21 -0.09 4.68 16 6 O -0.41 -4.44 17.88 5.54 0.10 -4.34 16 7 C 0.51 5.20 8.31 -11.21 -0.09 5.11 16 8 O -0.40 -4.95 17.88 5.54 0.10 -4.85 16 9 N -0.56 -5.32 2.15 -122.51 -0.26 -5.58 16 10 C 0.13 1.16 6.45 -5.20 -0.03 1.13 16 11 C 0.45 5.98 8.03 36.01 0.29 6.27 16 12 O -0.51 -7.83 16.18 -18.75 -0.30 -8.13 16 13 O -0.32 -5.09 9.76 -45.91 -0.45 -5.54 16 14 C 0.06 1.00 5.94 36.01 0.21 1.22 16 15 C 0.45 9.99 7.86 -10.98 -0.09 9.91 16 16 O -0.56 -14.78 16.08 -14.12 -0.23 -15.01 16 17 N -0.58 -13.39 5.09 -10.96 -0.06 -13.45 16 18 C -0.31 -8.50 10.16 -14.93 -0.15 -8.65 16 19 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 20 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 21 N -0.87 -24.79 13.96 55.50 0.77 -24.01 16 22 Si 0.88 18.80 27.74 -169.99 -4.71 14.08 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 26 C 0.72 6.76 8.32 -87.81 -0.73 6.03 16 27 O -0.48 -5.44 17.27 5.38 0.09 -5.35 16 28 H 0.10 0.34 7.84 -52.49 -0.41 -0.07 16 29 H 0.11 0.33 8.06 -52.49 -0.42 -0.10 16 30 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 31 H 0.11 0.44 7.75 -51.93 -0.40 0.04 16 32 H 0.11 0.54 7.98 -51.93 -0.41 0.12 16 33 H 0.15 0.98 7.98 -51.93 -0.41 0.56 16 34 H 0.15 0.95 8.09 -51.93 -0.42 0.53 16 35 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 36 H 0.09 1.35 8.13 -51.93 -0.42 0.93 16 37 H 0.37 7.53 5.76 -40.82 -0.24 7.29 16 38 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 360.17 15.07 5.43 5.43 Total: -1.00 -36.13 360.17 -4.14 -40.27 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -3.54 Total: 5.18 kcal Atomic # 6 Polarization: 26.86 SS G_CDS: -0.75 Total: 26.11 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.13 Total: -47.85 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -0.69 Total: -43.23 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.71 Total: 14.08 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.13 -4.14 -40.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322591136.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.964 kcal (2) G-P(sol) polarization free energy of solvation -36.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds