Wall clock time and date at job start Tue Mar 31 2020 22:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86793 * 119.99889 * 2 1 4 4 H 1.48496 * 109.47168 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47211 * 299.99538 * 3 2 1 6 6 H 1.48498 * 109.47208 * 59.99764 * 3 2 1 7 7 C 1.38949 * 119.99549 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99229 * 180.02562 * 7 2 1 9 9 N 1.37090 * 120.00559 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00115 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00177 * 5.12598 * 10 9 7 12 12 C 1.50703 * 119.99747 * 185.12781 * 10 9 7 13 13 S 1.81391 * 109.54736 * 49.54886 * 12 10 9 14 14 O 1.42111 * 110.54278 * 308.37418 * 13 12 10 15 15 O 1.42102 * 110.54558 * 171.62513 * 13 12 10 16 16 C 1.76199 * 104.45150 * 59.99604 * 13 12 10 17 17 C 1.38240 * 119.99662 * 89.99912 * 16 13 12 18 18 C 1.38227 * 119.99975 * 179.97438 * 17 16 13 19 19 C 1.38235 * 120.00192 * 359.97438 * 18 17 16 20 20 C 1.38237 * 119.99896 * 359.97438 * 19 18 17 21 21 C 1.38235 * 120.00210 * 269.98350 * 16 13 12 22 22 C 1.53179 * 109.54186 * 169.73001 * 12 10 9 23 23 C 1.53107 * 109.15892 * 63.05696 * 22 12 10 24 24 O 1.42901 * 109.48288 * 57.48167 * 23 22 12 25 25 C 1.42904 * 114.09428 * 298.88422 * 24 23 22 26 26 C 1.53091 * 109.41644 * 61.16288 * 25 24 23 27 27 H 0.96996 * 119.99927 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00129 * 0.02562 * 9 7 2 29 29 H 1.08003 * 119.99834 * 359.97438 * 17 16 13 30 30 H 1.08001 * 120.00631 * 180.02562 * 18 17 16 31 31 H 1.08001 * 120.00311 * 179.72264 * 19 18 17 32 32 H 1.08002 * 120.00194 * 179.97438 * 20 19 18 33 33 H 1.07997 * 119.99640 * 359.97438 * 21 16 13 34 34 H 1.08998 * 109.52205 * 182.87867 * 22 12 10 35 35 H 1.09005 * 109.51493 * 303.06541 * 22 12 10 36 36 H 1.08990 * 109.40589 * 297.49470 * 23 22 12 37 37 H 1.09001 * 109.48856 * 177.50963 * 23 22 12 38 38 H 1.09003 * 109.48175 * 301.17737 * 25 24 23 39 39 H 1.09001 * 109.48970 * 181.15340 * 25 24 23 40 40 H 1.09000 * 109.52211 * 182.48449 * 26 25 24 41 41 H 1.09001 * 109.57343 * 62.32651 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8894 2.3964 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2066 -3.5600 0.0944 12 6 1.2483 -4.8604 -0.1161 13 16 0.0888 -4.7711 -1.5082 14 8 -0.7202 -3.6069 -1.4095 15 8 -0.4884 -6.0452 -1.7590 16 6 1.1101 -4.4725 -2.9127 17 6 1.6230 -5.5353 -3.6327 18 6 2.4237 -5.3012 -4.7348 19 6 2.7113 -4.0043 -5.1173 20 6 2.1975 -2.9415 -4.3979 21 6 1.3982 -3.1756 -3.2947 22 6 2.2412 -6.0034 -0.3486 23 6 3.1637 -6.1228 0.8674 24 8 2.3786 -6.3366 2.0421 25 6 1.4665 -5.2762 2.3352 26 6 0.4744 -5.1242 1.1792 27 1 -0.4850 0.8400 -0.0004 28 1 0.3534 -2.3907 -0.0002 29 1 1.3980 -6.5486 -3.3341 30 1 2.8241 -6.1314 -5.2977 31 1 3.3406 -3.8214 -5.9757 32 1 2.4225 -1.9283 -4.6965 33 1 0.9969 -2.3454 -2.7325 34 1 1.6960 -6.9375 -0.4839 35 1 2.8347 -5.7947 -1.2388 36 1 3.7392 -5.2037 0.9770 37 1 3.8438 -6.9629 0.7269 38 1 2.0198 -4.3460 2.4641 39 1 0.9238 -5.5063 3.2521 40 1 -0.1943 -4.2874 1.3808 41 1 -0.1084 -6.0395 1.0754 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324306486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:50 Heat of formation + Delta-G solvation = -139.203002 kcal Electronic energy + Delta-G solvation = -29610.701070 eV Core-core repulsion = 25582.382015 eV Total energy + Delta-G solvation = -4028.319055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51757 -40.04469 -39.17044 -38.29487 -37.23501 -36.09131 -34.98979 -33.35281 -32.54559 -31.99890 -31.88040 -27.95522 -26.27002 -24.97763 -24.08249 -23.72713 -23.01661 -20.95028 -20.34338 -19.69428 -19.12236 -18.50855 -17.63411 -17.19660 -16.98064 -16.83735 -16.69896 -16.20605 -15.94326 -15.70088 -15.62010 -15.54164 -15.38302 -14.86370 -14.59102 -14.46342 -13.99652 -13.65596 -13.50125 -13.41257 -13.29711 -13.26401 -13.14941 -13.01779 -12.72478 -12.48332 -12.39650 -12.22093 -12.11916 -12.05994 -11.74409 -11.59073 -11.33075 -10.78029 -10.39796 -10.14225 -10.02547 -9.99879 -8.48224 -6.00149 -1.21223 -0.17589 0.32027 1.30420 1.40563 1.54315 1.57551 1.92616 2.18367 2.34548 2.60303 2.75223 2.88406 2.97543 3.11974 3.34162 3.41763 3.81761 3.82447 3.95890 4.07966 4.10317 4.16871 4.33946 4.38153 4.39946 4.44703 4.47354 4.63978 4.66796 4.70907 4.77508 4.93798 4.96877 5.10194 5.14940 5.27696 5.37909 5.39331 5.88728 5.90433 6.17096 6.47026 7.02557 7.40503 7.89351 8.67076 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009612 B = 0.006916 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.237103 B = 4047.391706 C = 5489.859018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.008 4.008 3 Si 0.991 3.009 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.331 4.331 8 H 0.092 0.908 9 N -0.557 5.557 10 C 0.458 3.542 11 O -0.590 6.590 12 C -0.537 4.537 13 S 2.493 3.507 14 O -0.955 6.955 15 O -0.944 6.944 16 C -0.668 4.668 17 C -0.035 4.035 18 C -0.138 4.138 19 C -0.057 4.057 20 C -0.152 4.152 21 C -0.035 4.035 22 C -0.117 4.117 23 C 0.054 3.946 24 O -0.385 6.385 25 C 0.074 3.926 26 C -0.145 4.145 27 H 0.280 0.720 28 H 0.402 0.598 29 H 0.158 0.842 30 H 0.174 0.826 31 H 0.170 0.830 32 H 0.142 0.858 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.122 0.878 38 H 0.033 0.967 39 H 0.132 0.868 40 H 0.088 0.912 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 -11.028 -6.205 13.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.210 4.210 3 Si 0.814 3.186 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.460 4.460 8 H 0.110 0.890 9 N -0.196 5.196 10 C 0.243 3.757 11 O -0.476 6.476 12 C -0.631 4.631 13 S 2.678 3.322 14 O -0.952 6.952 15 O -0.941 6.941 16 C -0.758 4.758 17 C -0.054 4.054 18 C -0.156 4.156 19 C -0.074 4.074 20 C -0.171 4.171 21 C -0.054 4.054 22 C -0.155 4.155 23 C -0.023 4.023 24 O -0.303 6.303 25 C -0.004 4.004 26 C -0.184 4.184 27 H 0.089 0.911 28 H 0.240 0.760 29 H 0.176 0.824 30 H 0.192 0.808 31 H 0.187 0.813 32 H 0.160 0.840 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.140 0.860 38 H 0.052 0.948 39 H 0.150 0.850 40 H 0.107 0.893 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.095 -11.110 -6.056 13.026 hybrid contribution 0.201 1.764 -0.058 1.777 sum 3.296 -9.346 -6.114 11.645 Atomic orbital electron populations 1.69785 1.07132 1.29507 1.47901 1.26165 0.96363 1.02672 0.95821 0.84903 0.78345 0.76979 0.78362 1.19053 1.19599 1.19744 1.19761 0.92911 0.83031 1.50330 0.89028 1.42325 1.10247 1.04636 1.62351 1.18829 0.87838 0.83171 0.85879 1.90411 1.14335 1.86088 1.56786 1.30001 1.13636 1.03374 1.16102 1.05596 0.76124 0.74042 0.76401 1.93568 1.65453 1.49804 1.86343 1.93489 1.74743 1.41729 1.84166 1.30113 1.22720 1.01157 1.21774 1.21296 0.92341 0.97855 0.93872 1.21741 0.98426 0.98538 0.96934 1.21949 0.95135 0.92148 0.98186 1.21578 0.98346 1.01461 0.95683 1.21060 0.93607 0.94856 0.95897 1.21979 0.97032 0.94479 1.02036 1.22887 0.92692 1.03927 0.82819 1.87824 1.53862 1.43749 1.44893 1.22473 0.90164 0.90717 0.97010 1.22299 0.98848 1.05206 0.92077 0.91068 0.76049 0.82435 0.80827 0.81265 0.83979 0.86920 0.86964 0.88887 0.91608 0.86049 0.94836 0.85022 0.89320 0.86263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.36 13.05 21.66 0.28 -49.07 16 2 C -0.01 -0.42 5.50 84.92 0.47 0.04 16 3 Si 0.99 41.53 29.55 68.60 2.03 43.55 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.33 -17.96 9.68 84.04 0.81 -17.14 16 8 H 0.09 5.16 7.17 -2.91 -0.02 5.13 16 9 N -0.56 -28.20 4.91 -306.98 -1.51 -29.70 16 10 C 0.46 20.74 4.77 87.66 0.42 21.15 16 11 O -0.59 -29.22 13.16 -3.05 -0.04 -29.26 16 12 C -0.54 -19.47 0.60 -11.42 -0.01 -19.48 16 13 S 2.49 93.66 4.13 -56.49 -0.23 93.43 16 14 O -0.95 -43.30 14.77 -127.65 -1.89 -45.18 16 15 O -0.94 -34.35 16.93 -127.65 -2.16 -36.51 16 16 C -0.67 -23.58 4.74 22.27 0.11 -23.48 16 17 C -0.03 -0.95 8.65 22.27 0.19 -0.76 16 18 C -0.14 -2.93 10.05 22.27 0.22 -2.71 16 19 C -0.06 -1.25 10.05 22.27 0.22 -1.03 16 20 C -0.15 -4.57 10.05 22.27 0.22 -4.34 16 21 C -0.03 -1.33 9.34 22.27 0.21 -1.12 16 22 C -0.12 -3.53 4.34 30.69 0.13 -3.40 16 23 C 0.05 1.67 6.56 72.02 0.47 2.14 16 24 O -0.38 -12.11 10.77 -148.98 -1.60 -13.71 16 25 C 0.07 2.31 6.62 72.01 0.48 2.79 16 26 C -0.15 -4.63 4.92 30.68 0.15 -4.48 16 27 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.40 20.84 5.74 -92.71 -0.53 20.30 16 29 H 0.16 3.52 7.57 -2.91 -0.02 3.50 16 30 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 33 H 0.11 5.09 7.57 -2.91 -0.02 5.07 16 34 H 0.11 2.76 8.02 -2.39 -0.02 2.74 16 35 H 0.09 2.72 6.95 -2.38 -0.02 2.70 16 36 H 0.07 2.50 5.46 -2.39 -0.01 2.49 16 37 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.03 1.24 7.38 -2.39 -0.02 1.22 16 39 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 41 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -71.97 345.36 -0.48 -72.45 By element: Atomic # 1 Polarization: 45.30 SS G_CDS: 0.54 Total: 45.84 kcal Atomic # 6 Polarization: -55.92 SS G_CDS: 4.10 Total: -51.82 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.22 Total: -78.78 kcal Atomic # 8 Polarization: -118.98 SS G_CDS: -5.69 Total: -124.67 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: 93.66 SS G_CDS: -0.23 Total: 93.43 kcal Total: -71.97 -0.48 -72.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324306486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.755 kcal (2) G-P(sol) polarization free energy of solvation -71.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds