Wall clock time and date at job start Tue Mar 31 2020 22:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86797 * 120.00240 * 2 1 4 4 H 1.48493 * 109.47360 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47125 * 299.99880 * 3 2 1 6 6 H 1.48505 * 109.46920 * 59.99676 * 3 2 1 7 7 C 1.39943 * 119.99516 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99564 * 197.85979 * 7 2 1 9 9 C 1.41396 * 120.00622 * 17.85940 * 7 2 1 10 10 C 1.40720 * 120.24615 * 204.38286 * 9 7 2 11 11 C 1.37610 * 119.74396 * 180.02562 * 10 9 7 12 12 C 1.38632 * 120.25146 * 0.02562 * 11 10 9 13 13 S 1.76203 * 119.75227 * 179.97438 * 12 11 10 14 14 O 1.42092 * 106.40153 * 336.45575 * 13 12 11 15 15 O 1.42097 * 106.40188 * 203.53841 * 13 12 11 16 16 N 1.65602 * 107.21684 * 89.99579 * 13 12 11 17 17 C 1.46503 * 120.00046 * 65.00592 * 16 13 12 18 18 C 1.53000 * 109.47059 * 164.99785 * 17 16 13 19 19 O 1.45197 * 109.47119 * 64.99608 * 18 17 16 20 20 C 1.34227 * 116.99879 * 179.97438 * 19 18 17 21 21 O 1.20829 * 120.00057 * 0.02562 * 20 19 18 22 22 C 1.50699 * 120.00043 * 180.02562 * 20 19 18 23 23 C 1.52999 * 117.50059 * 248.74611 * 22 20 19 24 24 C 1.53007 * 117.50099 * 180.08575 * 22 20 19 25 25 C 1.38641 * 120.50093 * 0.24522 * 12 11 10 26 26 C 1.37620 * 120.24220 * 359.45618 * 25 12 11 27 27 H 0.97001 * 119.99613 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.12304 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.87310 * 179.97438 * 11 10 9 30 30 H 0.97001 * 119.99767 * 244.99462 * 16 13 12 31 31 H 1.08994 * 109.47305 * 44.99194 * 17 16 13 32 32 H 1.09004 * 109.46500 * 284.99341 * 17 16 13 33 33 H 1.08999 * 109.46930 * 304.99899 * 18 17 16 34 34 H 1.09004 * 109.46704 * 184.99481 * 18 17 16 35 35 H 1.09006 * 115.55123 * 34.41733 * 22 20 19 36 36 H 1.09003 * 117.49674 * 359.97438 * 23 22 20 37 37 H 1.08998 * 117.50319 * 145.01682 * 23 22 20 38 38 H 1.08995 * 117.49941 * 214.98210 * 24 22 20 39 39 H 1.09002 * 117.49213 * 359.97438 * 24 22 20 40 40 H 1.08003 * 119.87564 * 179.70634 * 25 12 11 41 41 H 1.08008 * 120.12304 * 180.26939 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0490 -1.2344 0.2874 9 6 1.3521 -2.4072 -0.3744 10 6 1.8258 -3.6500 0.0853 11 6 1.1798 -4.8068 -0.2864 12 6 0.0669 -4.7511 -1.1111 13 16 -0.7497 -6.2406 -1.5795 14 8 0.2110 -7.2804 -1.4572 15 8 -1.4383 -5.9572 -2.7898 16 7 -1.9124 -6.5416 -0.4394 17 6 -3.0421 -5.6217 -0.2846 18 6 -4.1393 -6.2960 0.5415 19 8 -3.6524 -6.5367 1.8881 20 6 -4.4998 -7.1261 2.7461 21 8 -5.6114 -7.4314 2.3838 22 6 -4.0648 -7.4073 4.1613 23 6 -3.8733 -8.8709 4.5640 24 6 -5.0757 -8.0830 5.0902 25 6 -0.4053 -3.5328 -1.5746 26 6 0.2212 -2.3628 -1.2106 27 1 -0.4849 0.8401 -0.0004 28 1 2.6933 -3.6956 0.7268 29 1 1.5419 -5.7617 0.0649 30 1 -1.8455 -7.3271 0.1258 31 1 -3.4354 -5.3607 -1.2670 32 1 -2.7074 -4.7180 0.2247 33 1 -4.4115 -7.2446 0.0786 34 1 -5.0142 -5.6471 0.5820 35 1 -3.3907 -6.6720 4.6008 36 1 -4.0624 -9.6304 3.8054 37 1 -3.0735 -9.0985 5.2686 38 1 -5.0663 -7.7925 6.1407 39 1 -6.0555 -8.3237 4.6776 40 1 -1.2704 -3.5015 -2.2204 41 1 -0.1508 -1.4144 -1.5693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328709394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:11 Heat of formation + Delta-G solvation = -126.692775 kcal Electronic energy + Delta-G solvation = -26476.871885 eV Core-core repulsion = 22449.095314 eV Total energy + Delta-G solvation = -4027.776571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.74646 -37.73327 -37.58439 -36.53649 -36.17923 -35.16118 -34.87952 -34.05490 -30.27499 -29.48361 -29.29262 -25.83813 -25.53677 -22.84790 -22.55974 -21.51469 -21.14381 -20.58483 -18.99271 -18.17102 -17.63715 -17.19874 -16.98254 -16.66816 -16.40121 -15.62212 -15.49749 -15.18032 -14.47018 -14.28446 -14.13485 -13.47330 -13.38578 -13.21587 -13.03352 -12.65478 -12.44736 -12.20467 -12.19181 -11.96204 -11.80893 -11.49015 -11.39395 -11.31195 -11.27414 -11.20654 -11.05655 -10.95951 -10.92762 -10.76935 -10.60711 -10.41281 -9.79359 -9.68322 -9.52478 -9.09284 -7.97740 -7.71827 -7.16801 -4.81877 1.23431 1.89167 2.23087 2.39750 2.86216 2.88858 2.91488 2.94138 3.42630 3.64913 3.69470 4.21276 4.31567 4.38781 4.46596 4.49687 4.69003 4.80171 4.92107 5.14400 5.22098 5.23751 5.36768 5.37713 5.54132 5.58535 5.70790 5.77851 6.03317 6.07853 6.11585 6.28154 6.66290 6.69165 6.89353 7.03437 7.26290 7.33080 7.41407 7.58724 7.61631 7.75699 7.95314 8.30190 8.49760 8.63401 9.74606 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010905 B = 0.003015 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.016371 B = 9283.323062 C =10691.445137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.434 4.434 8 H 0.088 0.912 9 C 0.139 3.861 10 C -0.239 4.239 11 C 0.004 3.996 12 C -0.787 4.787 13 S 2.694 3.306 14 O -0.985 6.985 15 O -0.985 6.985 16 N -1.125 6.125 17 C 0.123 3.877 18 C 0.062 3.938 19 O -0.344 6.344 20 C 0.492 3.508 21 O -0.512 6.512 22 C -0.172 4.172 23 C -0.148 4.148 24 C -0.148 4.148 25 C -0.018 4.018 26 C -0.183 4.183 27 H 0.288 0.712 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.412 0.588 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.139 0.861 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.904 -8.061 7.737 13.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.150 4.150 3 Si 0.740 3.260 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.461 4.461 8 H 0.106 0.894 9 C 0.136 3.864 10 C -0.260 4.260 11 C -0.016 4.016 12 C -0.883 4.883 13 S 2.793 3.207 14 O -0.976 6.976 15 O -0.975 6.975 16 N -0.882 5.882 17 C -0.003 4.003 18 C -0.013 4.013 19 O -0.260 6.260 20 C 0.336 3.664 21 O -0.401 6.401 22 C -0.191 4.191 23 C -0.185 4.185 24 C -0.184 4.184 25 C -0.038 4.038 26 C -0.203 4.203 27 H 0.100 0.900 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.245 0.755 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.156 0.844 36 H 0.120 0.880 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.346 -8.377 6.730 13.606 hybrid contribution 0.394 1.214 0.678 1.445 sum -7.953 -7.163 7.408 13.017 Atomic orbital electron populations 1.69823 1.07912 1.30260 1.30781 1.26135 0.94903 1.02143 0.91811 0.86108 0.81058 0.79865 0.79003 1.17983 1.19224 1.19533 1.19980 0.98503 0.91157 1.36509 0.89407 1.17860 0.90033 0.92146 0.86403 1.21048 1.04446 0.92709 1.07755 1.20156 0.92107 0.97284 0.92068 1.29128 1.16581 1.15792 1.26831 1.01195 0.72322 0.74319 0.72854 1.93491 1.60442 1.56916 1.86708 1.93482 1.74515 1.86321 1.43187 1.55703 1.38884 1.35927 1.57691 1.21315 0.86012 0.93024 0.99994 1.23365 0.97433 1.01843 0.78680 1.86536 1.44833 1.71643 1.23030 1.22572 0.82833 0.73760 0.87249 1.90658 1.21526 1.49446 1.78475 1.21746 1.07123 0.99831 0.90392 1.23049 1.00951 0.91153 1.03364 1.23100 0.95367 1.01273 0.98703 1.20263 0.96865 0.91694 0.95004 1.21337 1.00068 0.96860 1.02029 0.90045 0.88206 0.87778 0.75493 0.88145 0.89842 0.90286 0.89630 0.84365 0.87996 0.87029 0.87246 0.87286 0.87884 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.76 10.95 55.55 0.61 -17.16 16 2 C 0.07 1.63 5.14 -17.34 -0.09 1.54 16 3 Si 0.92 16.77 29.60 -169.99 -5.03 11.73 16 4 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 5 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 6 H -0.27 -4.86 7.11 56.52 0.40 -4.45 16 7 C -0.43 -10.50 9.05 -37.74 -0.34 -10.84 16 8 H 0.09 2.02 7.91 -52.48 -0.41 1.60 16 9 C 0.14 3.47 5.57 -106.83 -0.60 2.88 16 10 C -0.24 -5.58 9.80 -38.87 -0.38 -5.96 16 11 C 0.00 0.09 9.49 -39.66 -0.38 -0.29 16 12 C -0.79 -16.92 5.97 -39.29 -0.23 -17.16 16 13 S 2.69 50.52 5.73 -107.50 -0.62 49.91 16 14 O -0.98 -20.48 17.26 -57.18 -0.99 -21.46 16 15 O -0.98 -20.35 16.72 -57.18 -0.96 -21.31 16 16 N -1.13 -16.56 5.97 -10.61 -0.06 -16.62 16 17 C 0.12 1.62 6.62 -4.04 -0.03 1.59 16 18 C 0.06 0.72 5.65 37.16 0.21 0.93 16 19 O -0.34 -4.35 10.04 -39.25 -0.39 -4.75 16 20 C 0.49 5.97 7.74 36.01 0.28 6.25 16 21 O -0.51 -7.27 16.01 -18.75 -0.30 -7.57 16 22 C -0.17 -1.54 6.30 -91.77 -0.58 -2.12 16 23 C -0.15 -1.05 10.24 -26.69 -0.27 -1.33 16 24 C -0.15 -1.07 10.05 -26.69 -0.27 -1.34 16 25 C -0.02 -0.40 9.49 -39.66 -0.38 -0.78 16 26 C -0.18 -4.47 8.70 -38.87 -0.34 -4.80 16 27 H 0.29 5.97 8.30 -40.82 -0.34 5.64 16 28 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 29 H 0.10 2.08 7.60 -52.49 -0.40 1.68 16 30 H 0.41 5.33 8.52 -34.47 -0.29 5.04 16 31 H 0.10 1.23 7.75 -51.93 -0.40 0.83 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 34 H 0.09 0.89 8.13 -51.93 -0.42 0.47 16 35 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.11 0.90 7.67 -51.93 -0.40 0.50 16 40 H 0.10 2.11 7.59 -52.48 -0.40 1.71 16 41 H 0.12 3.02 6.16 -52.48 -0.32 2.70 16 LS Contribution 369.93 15.07 5.57 5.57 Total: -1.00 -31.15 369.93 -10.70 -41.85 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.15 Total: 11.22 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: -3.39 Total: -31.42 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.55 Total: -33.78 kcal Atomic # 8 Polarization: -52.45 SS G_CDS: -2.64 Total: -55.09 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.73 kcal Atomic # 16 Polarization: 50.52 SS G_CDS: -0.62 Total: 49.91 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.15 -10.70 -41.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328709394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.841 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds