Wall clock time and date at job start Tue Mar 31 2020 22:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86797 * 120.00240 * 2 1 4 4 H 1.48493 * 109.47360 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47125 * 299.99880 * 3 2 1 6 6 H 1.48505 * 109.46920 * 59.99676 * 3 2 1 7 7 C 1.39943 * 119.99516 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99564 * 197.85979 * 7 2 1 9 9 C 1.41396 * 120.00622 * 17.85940 * 7 2 1 10 10 C 1.40720 * 120.24615 * 204.38286 * 9 7 2 11 11 C 1.37610 * 119.74396 * 180.02562 * 10 9 7 12 12 C 1.38632 * 120.25146 * 0.02562 * 11 10 9 13 13 S 1.76203 * 119.75227 * 179.97438 * 12 11 10 14 14 O 1.42092 * 106.40153 * 336.45575 * 13 12 11 15 15 O 1.42097 * 106.40188 * 203.53841 * 13 12 11 16 16 N 1.65602 * 107.21684 * 89.99579 * 13 12 11 17 17 C 1.46503 * 120.00046 * 65.00592 * 16 13 12 18 18 C 1.53000 * 109.47059 * 164.99785 * 17 16 13 19 19 O 1.45197 * 109.47119 * 64.99608 * 18 17 16 20 20 C 1.34227 * 116.99879 * 179.97438 * 19 18 17 21 21 O 1.20829 * 120.00057 * 0.02562 * 20 19 18 22 22 C 1.50699 * 120.00043 * 180.02562 * 20 19 18 23 23 C 1.52999 * 117.50059 * 248.74611 * 22 20 19 24 24 C 1.53007 * 117.50099 * 180.08575 * 22 20 19 25 25 C 1.38641 * 120.50093 * 0.24522 * 12 11 10 26 26 C 1.37620 * 120.24220 * 359.45618 * 25 12 11 27 27 H 0.97001 * 119.99613 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.12304 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.87310 * 179.97438 * 11 10 9 30 30 H 0.97001 * 119.99767 * 244.99462 * 16 13 12 31 31 H 1.08994 * 109.47305 * 44.99194 * 17 16 13 32 32 H 1.09004 * 109.46500 * 284.99341 * 17 16 13 33 33 H 1.08999 * 109.46930 * 304.99899 * 18 17 16 34 34 H 1.09004 * 109.46704 * 184.99481 * 18 17 16 35 35 H 1.09006 * 115.55123 * 34.41733 * 22 20 19 36 36 H 1.09003 * 117.49674 * 359.97438 * 23 22 20 37 37 H 1.08998 * 117.50319 * 145.01682 * 23 22 20 38 38 H 1.08995 * 117.49941 * 214.98210 * 24 22 20 39 39 H 1.09002 * 117.49213 * 359.97438 * 24 22 20 40 40 H 1.08003 * 119.87564 * 179.70634 * 25 12 11 41 41 H 1.08008 * 120.12304 * 180.26939 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0490 -1.2344 0.2874 9 6 1.3521 -2.4072 -0.3744 10 6 1.8258 -3.6500 0.0853 11 6 1.1798 -4.8068 -0.2864 12 6 0.0669 -4.7511 -1.1111 13 16 -0.7497 -6.2406 -1.5795 14 8 0.2110 -7.2804 -1.4572 15 8 -1.4383 -5.9572 -2.7898 16 7 -1.9124 -6.5416 -0.4394 17 6 -3.0421 -5.6217 -0.2846 18 6 -4.1393 -6.2960 0.5415 19 8 -3.6524 -6.5367 1.8881 20 6 -4.4998 -7.1261 2.7461 21 8 -5.6114 -7.4314 2.3838 22 6 -4.0648 -7.4073 4.1613 23 6 -3.8733 -8.8709 4.5640 24 6 -5.0757 -8.0830 5.0902 25 6 -0.4053 -3.5328 -1.5746 26 6 0.2212 -2.3628 -1.2106 27 1 -0.4849 0.8401 -0.0004 28 1 2.6933 -3.6956 0.7268 29 1 1.5419 -5.7617 0.0649 30 1 -1.8455 -7.3271 0.1258 31 1 -3.4354 -5.3607 -1.2670 32 1 -2.7074 -4.7180 0.2247 33 1 -4.4115 -7.2446 0.0786 34 1 -5.0142 -5.6471 0.5820 35 1 -3.3907 -6.6720 4.6008 36 1 -4.0624 -9.6304 3.8054 37 1 -3.0735 -9.0985 5.2686 38 1 -5.0663 -7.7925 6.1407 39 1 -6.0555 -8.3237 4.6776 40 1 -1.2704 -3.5015 -2.2204 41 1 -0.1508 -1.4144 -1.5693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328709394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:10 Heat of formation + Delta-G solvation = -145.972494 kcal Electronic energy + Delta-G solvation = -26477.707917 eV Core-core repulsion = 22449.095314 eV Total energy + Delta-G solvation = -4028.612603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.66905 -39.36324 -38.58357 -38.12956 -37.01876 -36.78683 -36.05510 -35.78119 -32.05033 -31.27094 -30.37586 -27.60668 -26.38047 -23.63013 -23.37230 -23.23476 -22.91682 -21.43599 -20.44362 -19.41032 -19.07763 -18.63586 -18.29242 -17.73323 -17.65375 -17.18718 -16.80843 -15.87179 -15.85281 -15.80035 -15.30556 -15.11506 -14.92706 -14.32663 -14.17687 -14.09100 -13.93115 -13.59205 -13.55923 -13.27775 -13.11163 -13.01360 -12.90038 -12.85808 -12.59517 -12.54586 -12.48317 -11.97904 -11.77448 -11.71495 -11.58096 -11.53633 -11.46281 -11.32749 -11.21906 -10.43641 -9.77259 -9.52861 -8.86512 -6.63474 -0.30563 0.49808 1.00551 1.08027 1.36726 1.42424 1.53170 1.54705 2.12313 2.24218 2.53308 2.80422 2.94303 3.48337 3.53991 3.63404 3.70963 3.75316 3.90336 4.02310 4.14710 4.27102 4.33184 4.34515 4.46840 4.67239 4.71011 4.86915 4.89139 4.90872 4.97208 4.98632 5.12644 5.17234 5.26038 5.35601 5.54285 5.61531 5.77888 5.94813 6.11663 6.17682 6.50766 6.66256 6.69973 6.82758 8.08587 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010905 B = 0.003015 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.016371 B = 9283.323062 C =10691.445137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.036 3.964 3 Si 0.989 3.011 4 H -0.256 1.256 5 H -0.262 1.262 6 H -0.261 1.261 7 C -0.466 4.466 8 H 0.089 0.911 9 C 0.111 3.889 10 C -0.258 4.258 11 C -0.001 4.001 12 C -0.796 4.796 13 S 2.729 3.271 14 O -1.001 7.001 15 O -1.000 7.000 16 N -1.111 6.111 17 C 0.118 3.882 18 C 0.063 3.937 19 O -0.354 6.354 20 C 0.489 3.511 21 O -0.539 6.539 22 C -0.191 4.191 23 C -0.138 4.138 24 C -0.141 4.141 25 C -0.019 4.019 26 C -0.208 4.208 27 H 0.298 0.702 28 H 0.110 0.890 29 H 0.125 0.875 30 H 0.423 0.577 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.150 0.850 36 H 0.096 0.904 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.095 0.905 40 H 0.119 0.881 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.172 -8.454 8.685 14.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.179 1.179 5 H -0.187 1.187 6 H -0.185 1.185 7 C -0.492 4.492 8 H 0.107 0.893 9 C 0.108 3.892 10 C -0.278 4.278 11 C -0.021 4.021 12 C -0.889 4.889 13 S 2.825 3.175 14 O -0.992 6.992 15 O -0.990 6.990 16 N -0.872 5.872 17 C -0.008 4.008 18 C -0.012 4.012 19 O -0.271 6.271 20 C 0.334 3.666 21 O -0.430 6.430 22 C -0.210 4.210 23 C -0.175 4.175 24 C -0.177 4.177 25 C -0.039 4.039 26 C -0.228 4.228 27 H 0.110 0.890 28 H 0.128 0.872 29 H 0.143 0.857 30 H 0.259 0.741 31 H 0.130 0.870 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.168 0.832 36 H 0.114 0.886 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.114 0.886 40 H 0.137 0.863 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.593 -8.763 7.692 14.484 hybrid contribution 0.374 1.206 0.388 1.321 sum -8.219 -7.556 8.080 13.782 Atomic orbital electron populations 1.69843 1.09226 1.31746 1.30806 1.26963 0.95606 1.05032 0.90793 0.85033 0.79458 0.75311 0.79306 1.17912 1.18668 1.18537 1.20236 0.98866 0.92138 1.38007 0.89252 1.18206 0.90712 0.93214 0.87103 1.21270 1.05223 0.92885 1.08467 1.20446 0.92029 0.97763 0.91832 1.29626 1.16727 1.16903 1.25684 1.00194 0.71977 0.72745 0.72625 1.93464 1.61717 1.56928 1.87068 1.93462 1.74701 1.86314 1.44507 1.55295 1.38158 1.36473 1.57240 1.21487 0.85783 0.92500 1.01006 1.23374 0.97018 1.02461 0.78375 1.86536 1.45305 1.71797 1.23435 1.23203 0.82389 0.72856 0.88117 1.90640 1.22547 1.50648 1.79127 1.21918 1.08752 1.01470 0.88822 1.23189 1.01464 0.89591 1.03242 1.23197 0.94595 1.00477 0.99459 1.20481 0.97043 0.91606 0.94801 1.21364 1.00984 0.97213 1.03228 0.89049 0.87233 0.85748 0.74097 0.86977 0.90643 0.89409 0.88325 0.83221 0.88571 0.84750 0.84850 0.88602 0.86277 0.87049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.35 10.95 21.83 0.24 -37.11 16 2 C 0.04 1.62 5.14 85.26 0.44 2.06 16 3 Si 0.99 34.13 29.60 68.60 2.03 36.16 16 4 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 5 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 6 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 7 C -0.47 -23.05 9.05 23.46 0.21 -22.83 16 8 H 0.09 4.21 7.91 -2.91 -0.02 4.19 16 9 C 0.11 5.69 5.57 -21.29 -0.12 5.58 16 10 C -0.26 -12.24 9.80 22.73 0.22 -12.01 16 11 C 0.00 -0.04 9.49 22.22 0.21 0.17 16 12 C -0.80 -33.86 5.97 22.46 0.13 -33.72 16 13 S 2.73 98.48 5.73 -56.49 -0.32 98.16 16 14 O -1.00 -39.97 17.26 -128.00 -2.21 -42.18 16 15 O -1.00 -39.80 16.72 -128.00 -2.14 -41.94 16 16 N -1.11 -30.81 5.97 -187.49 -1.12 -31.93 16 17 C 0.12 2.94 6.62 86.38 0.57 3.51 16 18 C 0.06 1.37 5.65 71.98 0.41 1.78 16 19 O -0.35 -8.57 10.04 -51.39 -0.52 -9.08 16 20 C 0.49 11.41 7.74 71.24 0.55 11.97 16 21 O -0.54 -14.98 16.01 21.96 0.35 -14.63 16 22 C -0.19 -3.13 6.30 -11.54 -0.07 -3.21 16 23 C -0.14 -1.67 10.24 30.62 0.31 -1.36 16 24 C -0.14 -1.78 10.05 30.62 0.31 -1.47 16 25 C -0.02 -0.87 9.49 22.22 0.21 -0.66 16 26 C -0.21 -10.42 8.70 22.73 0.20 -10.23 16 27 H 0.30 12.41 8.30 -92.71 -0.77 11.64 16 28 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 29 H 0.12 4.83 7.60 -2.91 -0.02 4.81 16 30 H 0.42 10.11 8.52 -96.75 -0.82 9.29 16 31 H 0.11 2.56 7.75 -2.39 -0.02 2.54 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.09 1.78 8.13 -2.39 -0.02 1.76 16 34 H 0.10 1.92 8.13 -2.39 -0.02 1.90 16 35 H 0.15 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.13 1.02 8.14 -2.39 -0.02 1.01 16 39 H 0.10 1.49 7.67 -2.39 -0.02 1.47 16 40 H 0.12 4.86 7.59 -2.91 -0.02 4.84 16 41 H 0.11 5.71 6.16 -2.91 -0.02 5.70 16 Total: -1.00 -66.76 369.93 0.15 -66.62 By element: Atomic # 1 Polarization: 36.11 SS G_CDS: 0.25 Total: 36.36 kcal Atomic # 6 Polarization: -64.02 SS G_CDS: 3.59 Total: -60.43 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -0.88 Total: -69.04 kcal Atomic # 8 Polarization: -103.32 SS G_CDS: -4.51 Total: -107.83 kcal Atomic # 14 Polarization: 34.13 SS G_CDS: 2.03 Total: 36.16 kcal Atomic # 16 Polarization: 98.48 SS G_CDS: -0.32 Total: 98.16 kcal Total: -66.76 0.15 -66.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328709394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.355 kcal (2) G-P(sol) polarization free energy of solvation -66.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds