Wall clock time and date at job start Tue Mar 31 2020 22:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00102 * 2 1 4 4 H 1.48495 * 109.47311 * 239.99979 * 3 2 1 5 5 H 1.48496 * 109.47020 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46868 * 120.00030 * 3 2 1 7 7 C 1.37880 * 119.99578 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99819 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00214 * 0.02562 * 7 2 1 10 10 C 1.53516 * 114.17391 * 179.97438 * 9 7 2 11 11 N 1.47481 * 87.93208 * 220.32703 * 10 9 7 12 12 C 1.37995 * 111.00010 * 138.70151 * 11 10 9 13 13 N 1.32875 * 120.04546 * 359.72020 * 12 11 10 14 14 C 1.32842 * 119.82619 * 179.75104 * 13 12 11 15 15 N 1.37995 * 120.04135 * 180.25508 * 14 13 12 16 16 N 1.33121 * 119.91193 * 0.52453 * 14 13 12 17 17 C 1.32143 * 120.08579 * 359.74674 * 16 14 13 18 18 C 1.50702 * 119.91191 * 179.97438 * 17 16 14 19 19 F 1.39900 * 109.47179 * 119.97762 * 18 17 16 20 20 F 1.39900 * 109.47107 * 239.98398 * 18 17 16 21 21 C 1.53004 * 109.47043 * 359.97438 * 18 17 16 22 22 F 1.39905 * 109.47006 * 59.99772 * 21 18 17 23 23 F 1.39897 * 109.47414 * 179.97438 * 21 18 17 24 24 F 1.39908 * 109.47183 * 300.00108 * 21 18 17 25 25 N 1.32163 * 120.17606 * 359.97438 * 17 16 14 26 26 C 1.47473 * 87.83906 * 27.00843 * 11 10 9 27 27 H 0.97002 * 120.00435 * 359.97438 * 1 2 3 28 28 H 1.09005 * 113.25672 * 312.94789 * 9 7 2 29 29 H 1.08997 * 113.47852 * 105.55340 * 10 9 7 30 30 H 1.08999 * 113.52569 * 335.09920 * 10 9 7 31 31 H 0.97005 * 119.99690 * 180.27122 * 15 14 13 32 32 H 0.96995 * 120.00481 * 0.26895 * 15 14 13 33 33 H 1.09001 * 113.47733 * 87.75523 * 26 11 10 34 34 H 1.08998 * 113.48147 * 218.22732 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.1494 -3.7439 0.0005 11 7 1.2073 -4.3584 -0.9533 12 6 1.8820 -5.0422 -1.9439 13 7 3.2104 -5.0727 -1.9448 14 6 3.8554 -5.7365 -2.8977 15 7 5.2348 -5.7754 -2.8999 16 7 3.1695 -6.3594 -3.8535 17 6 1.8486 -6.3224 -3.8523 18 6 1.0760 -7.0285 -4.9365 19 9 0.2452 -7.9966 -4.3622 20 9 0.2966 -6.0996 -5.6343 21 6 2.0526 -7.7025 -5.9024 22 9 2.8322 -8.6314 -5.2046 23 9 1.3355 -8.3586 -6.9086 24 9 2.8834 -6.7344 -6.4767 25 7 1.2032 -5.6676 -2.9028 26 6 0.8553 -2.9967 -1.3968 27 1 -0.4851 0.8400 0.0004 28 1 0.4445 -2.5305 0.7333 29 1 2.1863 -4.2529 0.9637 30 1 3.1391 -3.5661 -0.4203 31 1 5.7053 -6.2570 -3.5983 32 1 5.7340 -5.3213 -2.2033 33 1 1.4993 -2.6185 -2.1908 34 1 -0.2048 -2.8724 -1.6179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335533789.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:33 Heat of formation + Delta-G solvation = -106.757379 kcal Electronic energy + Delta-G solvation = -30278.026210 eV Core-core repulsion = 25084.169383 eV Total energy + Delta-G solvation = -5193.856827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.90473 -49.52977 -48.45014 -48.12474 -47.49093 -41.97435 -39.39630 -36.09625 -34.40737 -32.63801 -31.97410 -30.46307 -28.92856 -25.93123 -25.26046 -24.69548 -23.25027 -22.32887 -19.99369 -19.62017 -19.37446 -19.03110 -18.48554 -18.10081 -17.70101 -17.12874 -16.61340 -16.06658 -15.91586 -15.38525 -15.29505 -14.89215 -14.82503 -14.63152 -14.52705 -14.46014 -14.41718 -14.32734 -14.15883 -14.15335 -14.10050 -13.50982 -13.36979 -12.30289 -12.23839 -12.01517 -11.72059 -11.53228 -11.05190 -10.80191 -10.53494 -10.15433 -10.05693 -9.81490 -9.53873 -9.25111 -9.18455 -8.62938 -8.52310 -6.20125 -4.26155 0.44018 0.99306 1.32864 2.15569 2.72648 2.82684 3.03038 3.15574 3.22937 3.28959 3.30260 3.51744 3.61846 3.86564 4.21502 4.22584 4.30714 4.64982 5.07932 5.34821 5.75504 5.93008 6.08504 6.14370 6.23522 6.44017 6.47128 6.68591 6.79345 6.83115 7.17549 7.50185 7.61582 7.78500 8.15346 8.17823 8.77385 9.40093 10.89224 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.003212 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.816048 B = 8714.372471 C = 9090.014302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.069 3.931 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.046 3.954 10 C 0.009 3.991 11 N -0.424 5.424 12 C 0.566 3.434 13 N -0.606 5.606 14 C 0.625 3.375 15 N -0.798 5.798 16 N -0.603 5.603 17 C 0.345 3.655 18 C 0.352 3.648 19 F -0.141 7.141 20 F -0.140 7.140 21 C 0.450 3.550 22 F -0.146 7.146 23 F -0.161 7.161 24 F -0.145 7.145 25 N -0.550 5.550 26 C 0.034 3.966 27 H 0.266 0.734 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.419 0.581 32 H 0.422 0.578 33 H 0.063 0.937 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.417 -14.682 -10.385 19.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.080 0.920 9 C 0.027 3.973 10 C -0.118 4.118 11 N -0.145 5.145 12 C 0.204 3.796 13 N -0.340 5.340 14 C 0.258 3.742 15 N -0.348 5.348 16 N -0.336 5.336 17 C 0.060 3.940 18 C 0.310 3.690 19 F -0.121 7.121 20 F -0.120 7.120 21 C 0.394 3.606 22 F -0.127 7.127 23 F -0.142 7.142 24 F -0.126 7.126 25 N -0.277 5.277 26 C -0.092 4.092 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.251 0.749 32 H 0.255 0.745 33 H 0.081 0.919 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.711 -14.981 -10.113 19.281 hybrid contribution 1.281 0.996 -0.567 1.719 sum 7.992 -13.985 -10.680 19.327 Atomic orbital electron populations 1.69939 1.06043 1.27338 1.48487 1.25038 0.94871 0.99392 0.94176 0.86605 0.79635 0.82718 0.78784 1.20188 1.21117 1.19957 1.20901 0.92895 0.89620 1.52303 0.91963 1.20214 0.94499 0.91287 0.91313 1.24276 0.97208 0.95987 0.94365 1.65996 1.26358 1.15460 1.06724 1.22258 0.83715 0.86857 0.86752 1.68829 1.10738 1.25602 1.28835 1.19045 0.87687 0.83631 0.83863 1.41708 1.00379 1.58880 1.33858 1.67984 1.07628 1.28526 1.29493 1.22017 0.87246 0.92043 0.92661 1.19452 0.83911 0.80078 0.85538 1.93225 1.72315 1.61777 1.84812 1.93236 1.75213 1.65183 1.78378 1.20141 0.81326 0.78469 0.80681 1.93292 1.75314 1.65783 1.78357 1.93291 1.77577 1.81581 1.61738 1.93301 1.72369 1.62170 1.84803 1.68393 1.40679 1.13724 1.04939 1.24375 1.01932 0.79733 1.03121 0.92470 0.90771 0.90763 0.88806 0.74940 0.74505 0.91876 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.10 13.26 55.43 0.74 -23.36 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.52 -13.22 8.82 -34.44 -0.30 -13.52 16 8 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 9 C 0.05 1.08 3.77 -91.24 -0.34 0.74 16 10 C 0.01 0.18 6.95 -7.54 -0.05 0.13 16 11 N -0.42 -8.75 6.50 -184.74 -1.20 -9.95 16 12 C 0.57 11.02 6.82 -322.13 -2.20 8.83 16 13 N -0.61 -10.52 8.38 -14.75 -0.12 -10.64 16 14 C 0.63 9.17 8.76 -322.14 -2.82 6.35 16 15 N -0.80 -7.58 9.05 29.85 0.27 -7.31 16 16 N -0.60 -9.02 7.93 -11.52 -0.09 -9.11 16 17 C 0.35 5.67 6.79 -156.58 -1.06 4.60 16 18 C 0.35 4.95 1.82 -27.88 -0.05 4.90 16 19 F -0.14 -1.96 17.01 2.25 0.04 -1.92 16 20 F -0.14 -2.00 17.01 2.25 0.04 -1.96 16 21 C 0.45 5.44 2.37 37.16 0.09 5.53 16 22 F -0.15 -1.74 16.25 2.25 0.04 -1.70 16 23 F -0.16 -1.78 17.28 2.25 0.04 -1.74 16 24 F -0.15 -1.77 16.26 2.25 0.04 -1.74 16 25 N -0.55 -10.42 10.46 -11.52 -0.12 -10.54 16 26 C 0.03 0.75 7.23 -7.55 -0.05 0.70 16 27 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.07 1.87 8.11 -51.93 -0.42 1.45 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 30 H 0.09 1.87 6.61 -51.93 -0.34 1.53 16 31 H 0.42 2.92 8.95 -40.82 -0.37 2.55 16 32 H 0.42 3.31 8.95 -40.82 -0.37 2.94 16 33 H 0.06 1.44 7.85 -51.93 -0.41 1.03 16 34 H 0.08 1.92 8.14 -51.93 -0.42 1.49 16 LS Contribution 321.90 15.07 4.85 4.85 Total: -1.00 -28.10 321.90 -9.70 -37.80 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -2.29 Total: 2.30 kcal Atomic # 6 Polarization: 26.87 SS G_CDS: -6.90 Total: 19.98 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -0.53 Total: -70.91 kcal Atomic # 9 Polarization: -9.25 SS G_CDS: 0.19 Total: -9.06 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.10 -9.70 -37.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335533789.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.959 kcal (2) G-P(sol) polarization free energy of solvation -28.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds